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settingsdialog.cpp
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#include "SettingsDialog.h"
#include "ui_SettingsDialog.h"
#include "globals.h"
#include "Settings.h"
#include "qmath.h"
#include <QDebug>
#include <QThread>
#include <QBitmap>
#include <QColorDialog>
#include <QFileDialog>
/**
*
* class constructor using passed in settings values
*
* @author David Watts
* @since 2017/03/07
*
* FullName SettingsDialog::SettingsDialog
* Qualifier : QDialog(parent), ui(new Ui::SettingsDialog)
* @param SettingsValues v
* @param QWidget * parent
* @return
* Access public
*/
SettingsDialog::SettingsDialog(SettingsValues* v, QWidget *parent):
QDialog(parent),
ui(new Ui::SettingsDialog)
{
create(v);
m_stage_x = -1;
m_stage_y = -1;
imageSize = QSize(128, 128);
ui->setupUi(this);
//connect(ui->SettingsTab, &QTabWidget::setCurrentIndex, this, &SettingsDialog::onTabIndexChanged);
}
/*
void SettingsDialog::on_SettingsTab_setCurrentIndex(int index)
{
QString tab = ui->SettingsTab->tabText(index);
if(tab == "projectData")
{
// update QDom structure
//refresh the display
}
}
*/
/**
*
* class constructor
*
* @author David Watts
* @since 2017/03/07
*
* FullName SettingsDialog::SettingsDialog
* Qualifier : QDialog(parent), ui(new Ui::SettingsDialog)
* @param QWidget * parent
* @return
* Access public
*/
SettingsDialog::SettingsDialog(QWidget *parent) :
QDialog(parent),
ui(new Ui::SettingsDialog)
{
ui->setupUi(this);
}
void SettingsDialog::on_buttonBox_clicked(QAbstractButton *button)
{
if (button == ui->buttonBox->button(QDialogButtonBox::Ok) || button == ui->buttonBox->button(QDialogButtonBox::Apply))
{
// get project settings
m_Settings->s_project_Barcode = ui->editBarcode->text();
m_Settings->s_project_Description = ui->editDescription->text();
m_Settings->s_project_Directory = ui->editProjectDirectoryName->text();
m_Settings->s_project_FilenamePrefix = ui->editFilenamePrefix->text();
m_Settings->s_project_Username = ui->editName->text();
m_Settings->s_project_Institute = ui->editInstitute->text();
m_Settings->s_project_Name = ui->editProjectName->text();
m_Settings->s_project_ID = ui->editProjectID->text();
m_Settings->s_project_Version = ui->editVersion->text();
m_Settings->s_project_SampleDescription = ui->editSampleDescription->text();
m_Settings->d_project_Date = ui->projectDate->date();
emit sendSettings();
}
else if(button == ui->buttonBox->button(QDialogButtonBox::RestoreDefaults))
{
m_Settings->initialize();
initControls();
}
}
/**
*
* sets initial values of class
*
* @author David Watts
* @since 2017/03/07
*
* FullName SettingsDialog::create
* Qualifier
* @param SettingsValues v
* @return void
* Access public
*/
void SettingsDialog::create(SettingsValues* v)
{
m_Settings = v;
initControls();
}
/**
*
* Displays histogram image in Qlabel
*
* @author David Watts
* @since 2017/03/07
*
* FullName SettingsDialog::setHistogramImage
* Qualifier
* @param QImage im
* @return void
* Access public
*/
void SettingsDialog::setHistogramImage(QImage im)
{
QPixmap pixmap = QPixmap::fromImage(im);
ui->histogram_image->setPixmap(pixmap);
ui->histogram_image->setMask(pixmap.mask());
int w = im.width();
int h = im.width();
ui->histogram_image->show();
}
void SettingsDialog::setActiveTab(QString tabName)
{
int i = ui->SettingsTab->indexOf(ui->SettingsTab->findChild<QWidget*>(tabName));
if(i>=0)
ui->SettingsTab->setCurrentIndex(i);
}
void SettingsDialog::setImageGridDisplaySize(QSize size)
{
int w = size.width();
int h = size.height();
// set grid values based on image size
if (h > 0 && w > 0)
{
ui->sliderGridSpacingX->setMaximum(w);
ui->sliderGridSpacingY->setMaximum(h);
ui->sliderGridSpacingX->setPageStep(w / 10.0);
ui->sliderGridSpacingY->setPageStep(h / 10.0);
imageSize = size;
}
}
void SettingsDialog::on_btnCenterGrid_clicked()
{
ui->sliderGridSpacingX->setValue(imageSize.width() / 2.0);
ui->sliderGridSpacingY->setValue(imageSize.height() / 2.0);
}
/**
*
* initialises values
*
* @author David Watts
* @since 2017/03/07
*
* FullName SettingsDialog::initControls
* Qualifier
* @return void
* Access private
*/
void SettingsDialog::initControls()
{
m_stage_x = 0;
m_stage_y = 0;
ui->numClusters->setValue(m_Settings->cluster);
ui->labelCluster->setText(QString::number(m_Settings->cluster));
ui->distanceThreshold->setValue(m_Settings->distance);
ui->label_distance->setText(QString::number(m_Settings->distance));
ui->distanceBinsThreshold->setValue(m_Settings->distanceBins);
ui->label_distanceBins->setText(QString::number(m_Settings->distanceBins));
ui->ThresholdMaxSlider->setValue(m_Settings->threshold_max);
ui->ThresholdMinSlider->setValue(m_Settings->threshold_min);
ui->NoClustersSlider->setValue(m_Settings->NoClustersThreshold);
ui->ScoreThreshold->setValue(m_Settings->ScoreThreshold);
ui->scoreRegionArea->setValue(m_Settings->scoreAreaFactor);
ui->ScoreThresholdLbl->setText(QString::number(m_Settings->ScoreThreshold));
ui->ThresholdMinLbl->setText(QString::number(m_Settings->threshold_min));
ui->ThresholdMaxLbl->setText(QString::number(m_Settings->threshold_max));
ui->chkAutoThreshold->setChecked(m_Settings->autoThreshold);
ui->ThresholdMinSlider->setEnabled(!m_Settings->autoThreshold);
ui->ThresholdMaxSlider->setEnabled(!m_Settings->autoThreshold);
ui->chkCALIB_CB_CLUSTERING->setChecked(m_Settings->bCALIB_CB_CLUSTERING);
ui->chkCALIB_CB_FAST_CHECK->setChecked(m_Settings->bCALIB_CB_FAST_CHECK);
ui->chkCV_CALIB_CB_ADAPTIVE_THRESH->setChecked(m_Settings->bCV_CALIB_CB_ADAPTIVE_THRESH);
ui->chkCV_CALIB_CB_FILTER_QUADS->setChecked(m_Settings->bCV_CALIB_CB_FILTER_QUADS);
ui->chkCV_CALIB_CB_NORMALIZE_IMAGE->setChecked(m_Settings->bCV_CALIB_CB_NORMALIZE_IMAGE);
ui->chkFixedAspect->setChecked(m_Settings->FixedAspect);
ui->chkFixPrincipalPointCenter->setChecked(m_Settings->FixPrincipalPointCenter);
ui->chkZeroDistortion->setChecked(m_Settings->ZeroDistortion);
ui->chkProcessGrayscale->setChecked(m_Settings->bProcessGrayscale);
ui->spinSizeSquare->setValue(m_Settings->SizeOfSquare);
ui->spinItemsInRow->setValue(m_Settings->calibrateNoRows);
ui->spinItemsInColumn->setValue(m_Settings->calibrateNoRows);
ui->spinGridOffsetX->setValue(m_Settings->gridOffsetX);
ui->spinGridOffsetY->setValue(m_Settings->gridOffsetY);
ui->spinGridSpacingX->setValue(m_Settings->gridSpacingX);
ui->spinGridSpacingY->setValue(m_Settings->gridSpacingY);
ui->chkDisplayGrid->setChecked(m_Settings->displayGrid);
ui->spinDefaultFocusPosition->setValue(m_Settings->m_DefaultFocusPosition);
ui->spinFocusRange->setValue(m_Settings->m_FocusRange);
ui->spinCoarseFocusStep->setValue(m_Settings->m_CoarseFocusStep);
ui->spinFineFocusStep->setValue(m_Settings->m_FineFocusStep);
updateSamplingSpacing();
ui->spOverviewLensFocalLength->setValue(m_Settings->focalDistanceOverviewCamera);
ui->spMicroscopeLensFocalLength->setValue(m_Settings->focalDistanceMicroscopeCamera);
ui->chkIntrinsicGuess->setChecked(m_Settings->UseIntrinsicGuess);
ui->chkFixFocalLength->setChecked(m_Settings->FixFocalLength);
ui->chkLockFiducial->setChecked(m_Settings->bLockFiducial);
ui->chkPaddTargetImage->setChecked(m_Settings->bPaddTargetImage);
ui->spinWaveletLevels->setValue(m_Settings->numWaveletLevels);
ui->chkOptimiseFocusRange->setChecked(m_Settings->m_bOptimiseFocusRange);
ui->chkInterpolateFocusPosition->setChecked(m_Settings->m_bInterpolateFocusPosition);
ui->chkUseFocusThreshold->setChecked(m_Settings->m_bUseFocusThreshold);
ui->chkUseCoarseFocusRange->setChecked(m_Settings->m_bUseCoarseFocusRange);
ui->chkUseFineFocusRange->setChecked(m_Settings->m_bUseFineFocusRange);
ui->chkCenterFocus->setChecked(m_Settings->m_bCenterFocus);
ui->chkUseRegisteredFocusPoints->setChecked(m_Settings->m_bUseRegisteredFocusPoints);
ui->chkShowBestFocusImage->setChecked(m_Settings->m_bShowBestFocusImage);
ui->chkDetectTargetsWhileScanning->setChecked(m_Settings->m_bDetectTargetsWhileScanning);
ui->chkCorrectBackGround->setChecked(m_Settings->bCorrectBackGround);
enableFiducial(m_Settings->bLockFiducial);
ui->sliderBarcodeThreshold->setValue(m_Settings->BarcodeThreshold);
ui->chkAutoBarcodeThreshold->setChecked(m_Settings->BarcodeAutoThreshold);
ui->spinAspectTolerance->setValue(m_Settings->AspectTolerance);
ui->huMomentSimilaritySlider->setValue(m_Settings->huMomentSimilarity);
ui->cboCalibrateAlgorithm->setCurrentIndex((int)m_Settings->CalibrateAlgorithm);
ui->lbl_barCode_X->setText(QString::number(m_Settings->s_BarCodeImageRect.x()));
ui->lbl_barCode_Y->setText(QString::number(m_Settings->s_BarCodeImageRect.y()));
ui->lbl_barCode_W->setText(QString::number(m_Settings->s_BarCodeImageRect.width()));
ui->lbl_barCode_H->setText(QString::number(m_Settings->s_BarCodeImageRect.height()));
ui->editPixelSizeMicrons->setText(QString::number(m_Settings->mmPerPixel));
ui->spnImageWidthPixels->setValue(m_Settings->imageWidth);
ui->spnImageHeightPixels->setValue(m_Settings->imageHeight);
ui->lblImageWidthMicrons->setText(QString::number(m_Settings->mmPerPixel*double(m_Settings->imageWidth)));
ui->lblImageHeightMicrons->setText(QString::number(m_Settings->mmPerPixel*double(m_Settings->imageHeight)));
int index = m_Settings->algorithmType;
ui->AlgoComboBox->clear();
for (int i = 0; i <= algoType::LASTALGO; i++)
ui->AlgoComboBox->addItem(ALGOSTRINGS(i));
ui->AlgoComboBox->setCurrentIndex(index);
index = m_Settings->FocusAlgorithm;
ui->cboFocusAlgorithm->clear();
for (int i = 0; i <= FOCUSALGO::algo::HAARPY; i++)
ui->cboFocusAlgorithm->addItem(FOCUS_ALGO_STRINGS(i));
ui->cboFocusAlgorithm->setCurrentIndex(index);
ui->cboFocusPosition->clear();
for (int i = 0; i < m_Settings->focusPoints.length(); i++)
{
QVector3D pos = m_Settings->focusPoints[i];
ui->cboFocusPosition->addItem("{x: " + QString::number(pos.x()) + ", y: " + QString::number(pos.y()) + ", z: " + QString::number(pos.z()) + "}");
}
int cameraType = m_Settings->activeCamera;
ui->cboActiveCamera->clear();
for (int i = 0; i <= cameraType::camera::none; i++)
ui->cboActiveCamera->addItem(CAMERATYPE(i));
ui->cboActiveCamera->setCurrentIndex(cameraType);
int type = m_Settings->ThresholdType; // needed because setcurrentindex changes this value
ui->cboThresholdType->clear();
for (int i = 0; i <= thresholdType::posterize; i++)
ui->cboThresholdType->addItem(THRESHOLDSTRINGS(i));
ui->cboThresholdType->setCurrentIndex(type);
ui->cboAnnotationColour->clear();
for (int i = 0; i <= drawingItems::grid; i++)
{
ui->cboAnnotationColour->addItem(DRAWINGITEMS(i));
ui->cboAnnotationColour->setItemData(i, m_Settings->objectColours[i], Qt::ForegroundRole);
}
type = m_Settings->samplingType;
ui->cboSamplingType->setCurrentIndex(type);
ui->cboSamplingType->clear();
for (int i = 0; i <= SAMPLINGTYPE::noedge; i++)
ui->cboSamplingType->addItem(SAMPLINGTYPE_STRINGS(i));
// camera IP addresses
ui->lineEditMicroscopeCameraSN->setText(QString::number(m_Settings->microscopeCameraSN));
ui->lineEditOverviewCameraSN->setText(QString::number(m_Settings->overviewCameraSN));
ui->projectDate->setCalendarPopup(true);
ui->editName->setText(m_Settings->s_project_Username);
ui->editInstitute->setText(m_Settings->s_project_Institute);
ui->editProjectName->setText(m_Settings->s_project_Name);
ui->editProjectID->setText(m_Settings->s_project_ID);
ui->editVersion->setText(m_Settings->s_project_Version);
ui->editDescription->setText(m_Settings->s_project_Description);
ui->editSampleDescription->setText(m_Settings->s_project_SampleDescription);
ui->editFilenamePrefix->setText(m_Settings->s_project_FilenamePrefix);
ui->editBarcode->setText(m_Settings->s_project_Barcode);
ui->projectDate->setDate(m_Settings->d_project_Date);
ui->editProjectDirectoryName->setText(m_Settings->s_project_Directory);
ui->spinXPositionRelativeXY->setValue(m_Settings->XPositionRelativeXY);
ui->spinYPositionRelativeXY->setValue(m_Settings->YPositionRelativeXY);
ui->spinXPositionAbsoluteXY->setValue(m_Settings->XPositionAbsoluteXY);
ui->spinYPositionAbsoluteXY->setValue(m_Settings->YPositionAbsoluteXY);
ui->spinPositionAbsoluteZ->setValue(m_Settings->PositionAbsoluteZ);
ui->spinPositionRelativeZ->setValue(m_Settings->PositionRelativeZ);
ui->spinFocusFraction->setValue(m_Settings->m_FocusThresholdFraction);
ui->spinVelocityXY->setValue(m_Settings->VelocityXY);
ui->cboBaudXY->setCurrentIndex(3);
ui->editSendCommandXY->setText(m_Settings->s_CommandTextXY);
setupFiducialMarks();
}
void SettingsDialog::updateFiducialComboIndex()
{
ui->cboSelectFiducial->setCurrentIndex(ui->cboSelectFiducial->findData(QString::number(m_Settings->fiducialPos)));
}
void SettingsDialog::setupFiducialMarks()
{
labelsFiducial[FIDUCIAL::position::topleft_overview] = ui->lbl_topleft_overview;
labelsFiducial[FIDUCIAL::position::topright_overview] = ui->lbl_topright_overview;
labelsFiducial[FIDUCIAL::position::bottomleft_overview] = ui->lbl_bottomleft_overview;
labelsFiducial[FIDUCIAL::position::bottomright_overview] = ui->lbl_bottomright_overview;
labelsFiducial[FIDUCIAL::position::topleft_microscope] = ui->lbl_topleft_microscope;
labelsFiducial[FIDUCIAL::position::topright_microscope] = ui->lbl_topright_microscope;
labelsFiducial[FIDUCIAL::position::bottomleft_microscope] = ui->lbl_bottomleft_microscope;
labelsFiducial[FIDUCIAL::position::bottomright_microscope] = ui->lbl_bottomright_microscope;
// fiducial marks
int fidpos = m_Settings->fiducialPos;
ui->cboSelectFiducial->clear();
for (int i = 0; i <= FIDUCIAL::position::bottomright_microscope; i++)
{
QString s = FIDUCIAL_POSITION_STRINGS(i);
ui->cboSelectFiducial->addItem(s, QString::number(i));
}
ui->cboSelectFiducial->setCurrentIndex(ui->cboSelectFiducial->findData(QString::number(fidpos)));
spinFiducials_X.clear();
spinFiducials_Y.clear();
// images
// overview
spinFiducials_X[FIDUCIAL::position::topleft_overview] = ui->spnTopLeft_Overview_X;
spinFiducials_Y[FIDUCIAL::position::topleft_overview] = ui->spnTopLeft_Overview_Y;
spinFiducials_X[FIDUCIAL::position::topright_overview] = ui->spnTopRight_Overview_X;
spinFiducials_Y[FIDUCIAL::position::topright_overview] = ui->spnTopRight_Overview_Y;
spinFiducials_X[FIDUCIAL::position::bottomleft_overview] = ui->spnBottomLeft_Overview_X;
spinFiducials_Y[FIDUCIAL::position::bottomleft_overview] = ui->spnBottomLeft_Overview_Y;
spinFiducials_X[FIDUCIAL::position::bottomright_overview] = ui->spnBottomRight_Overview_X;
spinFiducials_Y[FIDUCIAL::position::bottomright_overview] = ui->spnBottomRight_Overview_Y;
// microscope image
spinFiducials_X[FIDUCIAL::position::topleft_microscope] = ui->spnTopLeft_Microscope_X;
spinFiducials_Y[FIDUCIAL::position::topleft_microscope] = ui->spnTopLeft_Microscope_Y;
spinFiducials_X[FIDUCIAL::position::topright_microscope] = ui->spnTopRight_Microscope_X;
spinFiducials_Y[FIDUCIAL::position::topright_microscope] = ui->spnTopRight_Microscope_Y;
spinFiducials_X[FIDUCIAL::position::bottomleft_microscope] = ui->spnBottomLeft_Microscope_X;
spinFiducials_Y[FIDUCIAL::position::bottomleft_microscope] = ui->spnBottomLeft_Microscope_Y;
spinFiducials_X[FIDUCIAL::position::bottomright_microscope] = ui->spnBottomRight_Microscope_X;
spinFiducials_Y[FIDUCIAL::position::bottomright_microscope] = ui->spnBottomRight_Microscope_Y;
// stage
//stage
spinFiducials_stage_X[FIDUCIAL::position::topleft_overview] = ui->spnTopLeft_Overview_Stage_X;
spinFiducials_stage_Y[FIDUCIAL::position::topleft_overview] = ui->spnTopLeft_Overview_Stage_Y;
spinFiducials_stage_X[FIDUCIAL::position::topright_overview] = ui->spnTopLeft_Overview_Stage_X;
spinFiducials_stage_Y[FIDUCIAL::position::topright_overview] = ui->spnTopLeft_Overview_Stage_Y;
spinFiducials_stage_X[FIDUCIAL::position::bottomleft_overview] = ui->spnTopLeft_Overview_Stage_X;
spinFiducials_stage_Y[FIDUCIAL::position::bottomleft_overview] = ui->spnTopLeft_Overview_Stage_Y;
spinFiducials_stage_X[FIDUCIAL::position::bottomright_overview] = ui->spnTopLeft_Overview_Stage_X;
spinFiducials_stage_Y[FIDUCIAL::position::bottomright_overview] = ui->spnTopLeft_Overview_Stage_Y;
// microscope
spinFiducials_stage_X[FIDUCIAL::position::topleft_microscope] = ui->spnTopLeft_Microscope_Stage_X;
spinFiducials_stage_Y[FIDUCIAL::position::topleft_microscope] = ui->spnTopLeft_Microscope_Stage_Y;
spinFiducials_stage_Z[FIDUCIAL::position::topleft_microscope] = ui->spnTopLeft_Microscope_Stage_Z;
spinFiducials_stage_X[FIDUCIAL::position::topright_microscope] = ui->spnTopRight_Microscope_Stage_X;
spinFiducials_stage_Y[FIDUCIAL::position::topright_microscope] = ui->spnTopRight_Microscope_Stage_Y;
spinFiducials_stage_Z[FIDUCIAL::position::topright_microscope] = ui->spnTopRight_Microscope_Stage_Z;
spinFiducials_stage_X[FIDUCIAL::position::bottomleft_microscope] = ui->spnBottomLeft_Microscope_Stage_X;
spinFiducials_stage_Y[FIDUCIAL::position::bottomleft_microscope] = ui->spnBottomLeft_Microscope_Stage_Y;
spinFiducials_stage_Z[FIDUCIAL::position::bottomleft_microscope] = ui->spnBottomLeft_Microscope_Stage_Z;
spinFiducials_stage_X[FIDUCIAL::position::bottomright_microscope] = ui->spnBottomRight_Microscope_Stage_X;
spinFiducials_stage_Y[FIDUCIAL::position::bottomright_microscope] = ui->spnBottomRight_Microscope_Stage_Y;
spinFiducials_stage_Z[FIDUCIAL::position::bottomright_microscope] = ui->spnBottomRight_Microscope_Stage_Z;
// image positions
for (int i = 0; i <= FIDUCIAL::position::bottomright_microscope; i++)
{
QPointF p = m_Settings->fiducial_marks_image[i];
spinFiducials_X[i]->setValue(p.x());
spinFiducials_Y[i]->setValue(p.y());
// stage positions
QVector3D pv = m_Settings->fiducial_marks_stage[i];
spinFiducials_stage_X[i]->setValue(pv.x());
spinFiducials_stage_Y[i]->setValue(pv.y());
// only do focus Z axis for microscope
if(i>FIDUCIAL::position::bottomright_overview)
spinFiducials_stage_Z[i]->setValue(pv.z());
}
this->setStyleSheet("QDoubleSpinBox.highlight{ background-color: yellow; }");
checkFiducialsOrder();
}
void SettingsDialog::flagFiducialOrderRed(int ind1, int ind2)
{
spinFiducials_X[ind1]->setStyleSheet("color: rgb(255,0,0); ");
spinFiducials_Y[ind1]->setStyleSheet("color: rgb(255,0,0); ");
spinFiducials_X[ind2]->setStyleSheet("color: rgb(255,0,0); ");
spinFiducials_Y[ind2]->setStyleSheet("color: rgb(255,0,0); ");
}
bool SettingsDialog::checkIndex(const double& val1, const double& val2)
{
if (val1 < 0 || val2 < 0)
return false;
if (val1 < val2)
return true;
else
return false;
}
bool SettingsDialog::checkOrder(int startIndex, QPointF top_Left, QPointF top_Right, QPointF bottom_Left, QPointF bottom_Right, bool flagRed)
{
bool bInOrder = true;
int c = startIndex > 3 ? 4 : 0; // reference XY stage not image
int ind1, ind2, col=0;
QModelIndex index1, index2;
ind1 = startIndex;
if (!checkIndex(top_Left.x(), top_Right.x()))
if (flagRed)
flagFiducialOrderRed(ind1, startIndex + 1);
if (!checkIndex(top_Left.x(), bottom_Right.x()))
if (flagRed)
flagFiducialOrderRed(ind1, startIndex + 3);
if (!checkIndex(top_Left.y(), bottom_Left.y()))
if (flagRed)
flagFiducialOrderRed(ind1, startIndex + 2);
if (!checkIndex(top_Left.y(), bottom_Right.y()))
if (flagRed)
flagFiducialOrderRed(ind1, startIndex + 3);
ind1 = startIndex + 3;
if (!checkIndex(bottom_Left.x(), bottom_Right.x()))
if (flagRed)
flagFiducialOrderRed(startIndex + 2, ind1);
if (!checkIndex(top_Right.y(), bottom_Right.y()))
if (flagRed)
flagFiducialOrderRed(startIndex + 1, ind1);
return bInOrder;
}
bool SettingsDialog::checkFiducialsOrder(bool bFlagRed)
{
bool bInOrder = true;
QString str= "";
for (int i = 0; i <= FIDUCIAL::position::bottomright_microscope; i++)
{
spinFiducials_X[i]->setStyleSheet("color: rgb(0,0,0); ");
spinFiducials_Y[i]->setStyleSheet("color: rgb(0,0,0); ");
spinFiducials_stage_X[i]->setStyleSheet("color: rgb(0,0,0); ");
spinFiducials_stage_Y[i]->setStyleSheet("color: rgb(0,0,0); ");
if(i>FIDUCIAL::position::bottomright_overview)
spinFiducials_stage_Z[i]->setStyleSheet("color: rgb(0,0,0); ");
}
return checkFiducialsOrder(m_Settings->fiducial_marks_stage, m_Settings->fiducial_marks_image, true);
}
bool SettingsDialog::checkFiducialsOrder(QInt3DMap fiducial_marks_stage, QIntPointMap fiducial_marks_image, bool bFlagRed)
{
bool bInOrder = true;
QString str = "";
int startIndex = FIDUCIAL::position::topleft_overview;
QPointF tl = m_Settings->fiducial_marks_image[startIndex];
QPointF tr = m_Settings->fiducial_marks_image[startIndex + 1];
QPointF bl = m_Settings->fiducial_marks_image[startIndex + 2];
QPointF br = m_Settings->fiducial_marks_image[startIndex + 3];
if (!checkOrder(startIndex, tl, tr, bl, br, bFlagRed))
{
str = "fiducial marks of overview camera image are not in order";
bInOrder = false;
}
startIndex = FIDUCIAL::position::topleft_microscope;
tl = m_Settings->fiducial_marks_stage[startIndex].toPointF();
tr = m_Settings->fiducial_marks_stage[startIndex + 1].toPointF();
bl = m_Settings->fiducial_marks_stage[startIndex + 2].toPointF();
br = m_Settings->fiducial_marks_stage[startIndex + 3].toPointF();
if (!checkOrder(startIndex, br, bl, tr, tl, bFlagRed)) // stage coordinate system reversed in X and Y!
{
str += " fiducial marks of microscope image are not in order";
bInOrder = false;
}
ui->lblFiducialCheck->setText(str);
return bInOrder;
}
void SettingsDialog::on_cboSelectFiducial_currentIndexChanged(int value)
{
int index = ui->cboSelectFiducial->itemData(value).toInt();
foreach(QWidget* label, labelsFiducial)
((QLabel*)label)->setStyleSheet("color: rgb(0,0,0); ");
// change text colour of fiducials or underline
labelsFiducial[index]->setStyleSheet("color: rgb(0,255,0); ");
emit SETFIDUCIALPOSITION((FIDUCIAL::position) index);
}
void SettingsDialog::on_chkLockFiducial_clicked(bool clicked)
{
m_Settings->bLockFiducial = clicked;
enableFiducial(clicked);
}
void SettingsDialog::on_chkPaddTargetImage_clicked(bool checked)
{
m_Settings->bPaddTargetImage = checked;
emit updatePaddTarget(m_Settings->bPaddTargetImage, m_Settings->numWaveletLevels);
}
void SettingsDialog::enableFiducial(bool lock)
{
if (lock)
{
for (int i = 0; i <= FIDUCIAL::position::bottomright_microscope; i++)
{
if (spinFiducials_X[i])
spinFiducials_X[i]->setEnabled(false);
if (spinFiducials_Y[i])
spinFiducials_Y[i]->setEnabled(false);
if (spinFiducials_stage_X[i])
spinFiducials_stage_X[i]->setEnabled(false);
if (spinFiducials_stage_Y[i])
spinFiducials_stage_Y[i]->setEnabled(false);
if (spinFiducials_stage_Z[i])
spinFiducials_stage_Z[i]->setEnabled(false);
ui->btnDeleteFiducial->setEnabled(false);
}
}
else
{
for (int i = 0; i <= FIDUCIAL::position::bottomright_microscope; i++)
{
if (spinFiducials_X[i])
spinFiducials_X[i]->setEnabled(true);
if (spinFiducials_Y[i])
spinFiducials_Y[i]->setEnabled(true);
if (spinFiducials_stage_X[i])
spinFiducials_stage_X[i]->setEnabled(true);
if (spinFiducials_stage_Y[i])
spinFiducials_stage_Y[i]->setEnabled(true);
if (spinFiducials_stage_Z[i])
spinFiducials_stage_Z[i]->setEnabled(true);
ui->btnDeleteFiducial->setEnabled(true);
}
}
emit LockFiducial(lock);
}
void SettingsDialog::setFiducial(int type)
{
if (type > FIDUCIAL::position::bottomright_microscope)
{
QString message = "To properly set the stage fiducial position the microscope objective must be used so that the stage is in the correct position";
emit LOGCONSOLE(message, CONSOLECOLOURS::colour::Warning);
}
if (type <= FIDUCIAL::position::bottomright_microscope)
{
m_Settings->fiducial_marks_image[type] = QPointF(m_Settings->m_image_position_XY_X, m_Settings->m_image_position_XY_Y);
m_Settings->fiducial_marks_stage[type] = QVector3D(m_Settings->m_stage_position_XY_X, m_Settings->m_stage_position_XY_Y, m_Settings->m_stage_position_Z);
spinFiducials_X[type]->setValue(m_Settings->m_image_position_XY_X);
spinFiducials_Y[type]->setValue(m_Settings->m_image_position_XY_Y);
// if microscope then set stage positions
spinFiducials_stage_X[type]->setValue(m_Settings->m_stage_position_XY_X);
spinFiducials_stage_Y[type]->setValue(m_Settings->m_stage_position_XY_Y);
if(type>FIDUCIAL::position::bottomright_overview)
spinFiducials_stage_Z[type]->setValue(m_Settings->m_stage_position_Z);
}
checkFiducialsOrder();
}
void SettingsDialog::setFiducial()
{
QVariant v = ui->cboSelectFiducial->currentData();
int value = v.toInt();
setFiducial(value);
}
void SettingsDialog::on_btnDeleteFiducial_clicked()
{
int value = ui->cboSelectFiducial->currentIndex();
spinFiducials_X[value]->setValue(-1);
spinFiducials_Y[value]->setValue(-1);
spinFiducials_stage_X[value]->setValue(-1);
spinFiducials_stage_Y[value]->setValue(-1);
if (value > FIDUCIAL::position::bottomright_microscope)
{
spinFiducials_stage_Z[value]->setValue(-1);
m_Settings->fiducial_marks_stage[value] = QVector3D(-1, -1, -1);
}
else
m_Settings->fiducial_marks_image[value] = QPointF(-1, -1);
}
void SettingsDialog::on_btnMoveToFiducial_clicked()
{
int index = ui->cboSelectFiducial->currentData().toInt();
if (index > FIDUCIAL::position::bottomright_overview)
{
QVector3D p = m_Settings->fiducial_marks_stage[index];
if(p.x()>=0 && p.y()>=0)
{
emit MoveAbsoluteXY(p.x(), p.y(), ACTIONS::action::nothing);
emit MoveAbsoluteZ(p.z(), ACTIONS::action::nothing);
}
else
{
QString s = "no stage fiducial position for ";
s += FIDUCIAL_POSITION_STRINGS(index);
s += " recorded";
emit LOGCONSOLE(s, CONSOLECOLOURS::Information);
}
}
else
{
QPointF pt = m_Settings->fiducial_marks_image[index];
if (pt.x() >= 0 && pt.y() >= 0)
emit moveToFiducialFromOverview(pt.toPoint());
else
{
QString s = "no image fiducial position for ";
s += FIDUCIAL_POSITION_STRINGS(index);
s += " recorded";
emit LOGCONSOLE(s, CONSOLECOLOURS::Information);
}
}
}
void SettingsDialog::on_btnCalcTransformationMatrix_clicked()
{
if(checkFiducialsOrder())
{
// create QRect of fiducial positions in image
QPolygonF imageFiducials;
imageFiducials.append(QPointF(m_Settings->fiducial_marks_image[FIDUCIAL::position::topleft_overview].x(), m_Settings->fiducial_marks_image[FIDUCIAL::position::topleft_overview].y()));
imageFiducials.append(QPointF(m_Settings->fiducial_marks_image[FIDUCIAL::position::topright_overview].x(), m_Settings->fiducial_marks_image[FIDUCIAL::position::topright_overview].y()));
imageFiducials.append(QPointF(m_Settings->fiducial_marks_image[FIDUCIAL::position::bottomleft_overview].x(), m_Settings->fiducial_marks_image[FIDUCIAL::position::bottomleft_overview].y()));
imageFiducials.append(QPointF(m_Settings->fiducial_marks_image[FIDUCIAL::position::bottomright_overview].x(), m_Settings->fiducial_marks_image[FIDUCIAL::position::bottomright_overview].y()));
QPolygonF stageFiducials;
stageFiducials.append(QPointF(m_Settings->fiducial_marks_stage[FIDUCIAL::position::topleft_microscope].x(), m_Settings->fiducial_marks_stage[FIDUCIAL::position::topleft_microscope].y()));
stageFiducials.append(QPointF(m_Settings->fiducial_marks_stage[FIDUCIAL::position::topright_microscope].x(), m_Settings->fiducial_marks_stage[FIDUCIAL::position::topright_microscope].y()));
stageFiducials.append(QPointF(m_Settings->fiducial_marks_stage[FIDUCIAL::position::bottomleft_microscope].x(), m_Settings->fiducial_marks_stage[FIDUCIAL::position::bottomleft_microscope].y()));
stageFiducials.append(QPointF(m_Settings->fiducial_marks_stage[FIDUCIAL::position::bottomright_microscope].x(), m_Settings->fiducial_marks_stage[FIDUCIAL::position::bottomright_microscope].y()));
QTransform trans;
// if possible to get transformation matrix
if (QTransform::quadToQuad(imageFiducials, stageFiducials, m_Settings->m_coordinateTransform))
emit LOGCONSOLE("coordinate transform successfully registered", CONSOLECOLOURS::Information);
else
emit LOGCONSOLE("unable to calculate coordinate transform", CONSOLECOLOURS::Information);
// now create Fiducials to Stage transformation matrix
/*
emit createTransformationMatrix(QVector3D(3,3,3), QVector3D(6,3,3), QVector3D(3, 6,6)); // test matrix
*/
emit createTransformationMatrix(m_Settings->fiducial_marks_stage[FIDUCIAL::position::topleft_microscope],
m_Settings->fiducial_marks_stage[FIDUCIAL::position::topright_microscope],
m_Settings->fiducial_marks_stage[FIDUCIAL::position::bottomleft_microscope]);
}
else
emit LOGCONSOLE("please ensure that fiducial marks correctly registered", CONSOLECOLOURS::Information);
}
/**
*
* class destructor
*
* @author David Watts
* @since 2017/03/07
*
* FullName SettingsDialog::~SettingsDialog
* Qualifier
* @return
* Access public
*/
SettingsDialog::~SettingsDialog()
{
delete ui;
}
/**
*
* slot for ui->distanceThreshold changed
*
* @author David Watts
* @since 2017/03/07
*
* FullName SettingsDialog::on_distanceThreshold_valueChanged
* Qualifier
* @param int value
* @return void
* Access private
*/
void SettingsDialog::on_distanceThreshold_valueChanged(int value)
{
m_Settings->distance = value;
}
void SettingsDialog::on_distanceBinsThreshold_valueChanged
(int value)
{
m_Settings->distanceBins = value;
}
/**
*
* slot for ui->numClusters changed
*
* @author David Watts
* @since 2017/03/07
*
* FullName SettingsDialog::on_numClusters_valueChanged
* Qualifier
* @param int value
* @return void
* Access private
*/
void SettingsDialog::on_numClusters_valueChanged(int value)
{
m_Settings->cluster = value;
}
/**
*
* slot for ui->ThresholdMaxSlider changed
*
* @author David Watts
* @since 2017/03/07
*
* FullName SettingsDialog::on_ThresholdMaxSlider_valueChanged
* Qualifier
* @param int value
* @return void
* Access private
*/
void SettingsDialog::on_ThresholdMaxSlider_valueChanged(int value)
{
m_Settings->threshold_max = value;
if (m_Settings->ThresholdType == thresholdType::Range)
{
if (value <= m_Settings->threshold_min)
{
ui->ThresholdMinSlider->setValue(value - 1);
ui->ThresholdMinLbl->setText(QString::number(value - 1));
}
}
}
/**
*
* slot for ui->ThresholdMinSlider changed
*
* @author David Watts
* @since 2017/03/07
*
* FullName SettingsDialog::on_ThresholdMinSlider_valueChanged
* Qualifier
* @param int value
* @return void
* Access private
*/
void SettingsDialog::on_ThresholdMinSlider_valueChanged(int value)
{
m_Settings->threshold_min = value;
if (m_Settings->ThresholdType == thresholdType::Range)
{
if (value >= m_Settings->threshold_max)
{
ui->ThresholdMaxSlider->setValue(value + 1);
ui->ThresholdMaxLbl->setText(QString::number(value + 1));
}
}
}
void SettingsDialog::on_btnProjectDirectory_clicked(bool checked)
{
QFileDialog dialog;
QString directory = dialog.getExistingDirectory(this, tr("Select Project Directory"), QDir::currentPath(), QFileDialog::DontUseNativeDialog);
/* // should be in dialog close
QDir dir(directory);
// create if not existing
if (!dir.exists()) {
dir.mkpath(".");
}
*/
if (!directory.isEmpty()) {
if (directory.right(1) != "/")
directory += "/";
m_Settings->s_project_Directory = directory;
ui->editProjectDirectoryName->setText(directory);
}
}
void SettingsDialog::on_spnTopLeft_Overview_X_valueChanged(double value) { m_Settings->fiducial_marks_image[FIDUCIAL::position::topleft_overview].setX(value); checkFiducialsOrder();}
void SettingsDialog::on_spnTopLeft_Overview_Y_valueChanged(double value) { m_Settings->fiducial_marks_image[FIDUCIAL::position::topleft_overview].setY(value); checkFiducialsOrder();}
void SettingsDialog::on_spnTopRight_Overview_X_valueChanged(double value) { m_Settings->fiducial_marks_image[FIDUCIAL::position::topright_overview].setX(value); checkFiducialsOrder();}
void SettingsDialog::on_spnTopRight_Overview_Y_valueChanged(double value) { m_Settings->fiducial_marks_image[FIDUCIAL::position::topright_overview].setY(value); checkFiducialsOrder();}
void SettingsDialog::on_spnBottomLeft_Overview_X_valueChanged(double value) { m_Settings->fiducial_marks_image[FIDUCIAL::position::bottomleft_overview].setX(value); checkFiducialsOrder();}
void SettingsDialog::on_spnBottomLeft_Overview_Y_valueChanged(double value) { m_Settings->fiducial_marks_image[FIDUCIAL::position::bottomleft_overview].setY(value); checkFiducialsOrder();}
void SettingsDialog::on_spnBottomRight_Overview_X_valueChanged(double value) { m_Settings->fiducial_marks_image[FIDUCIAL::position::bottomright_overview].setX(value); checkFiducialsOrder();}
void SettingsDialog::on_spnBottomRight_Overview_Y_valueChanged(double value) { m_Settings->fiducial_marks_image[FIDUCIAL::position::bottomright_overview].setY(value); checkFiducialsOrder();}
void SettingsDialog::on_spnTopLeft_Overview_Stage_X_valueChanged(double value)
{
m_Settings->fiducial_marks_stage[FIDUCIAL::position::topleft_overview].setX(value);
m_Settings->fiducial_marks_stage[FIDUCIAL::position::topright_overview].setX(value);
m_Settings->fiducial_marks_stage[FIDUCIAL::position::bottomleft_overview].setX(value);
m_Settings->fiducial_marks_stage[FIDUCIAL::position::bottomright_overview].setX(value);
checkFiducialsOrder();
}
void SettingsDialog::on_spnTopLeft_Overview_Stage_Y_valueChanged(double value)
{
m_Settings->fiducial_marks_stage[FIDUCIAL::position::topleft_overview].setY(value);
m_Settings->fiducial_marks_stage[FIDUCIAL::position::topright_overview].setY(value);
m_Settings->fiducial_marks_stage[FIDUCIAL::position::bottomleft_overview].setY(value);
m_Settings->fiducial_marks_stage[FIDUCIAL::position::bottomright_overview].setY(value);
checkFiducialsOrder();
}
void SettingsDialog::on_spnTopLeft_Microscope_X_valueChanged(double value){ m_Settings->fiducial_marks_image[FIDUCIAL::position::topleft_microscope].setX(value); }
void SettingsDialog::on_spnTopLeft_Microscope_Y_valueChanged(double value){ m_Settings->fiducial_marks_image[FIDUCIAL::position::topleft_microscope].setY(value); }
void SettingsDialog::on_spnTopLeft_Microscope_Stage_X_valueChanged(double value){ m_Settings->fiducial_marks_stage[FIDUCIAL::position::topleft_microscope].setX(value); checkFiducialsOrder();}
void SettingsDialog::on_spnTopLeft_Microscope_Stage_Y_valueChanged(double value){ m_Settings->fiducial_marks_stage[FIDUCIAL::position::topleft_microscope].setY(value); checkFiducialsOrder();}