From e80c26d6ec1cefbd4520f778a5378c47f422c7ee Mon Sep 17 00:00:00 2001 From: Frederic Lemoine Date: Tue, 17 Sep 2024 23:31:57 +0200 Subject: [PATCH] Changed option for stockholm format, now -k. The previous had conflicts with other commands #15 --- cmd/root.go | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/cmd/root.go b/cmd/root.go index 6f90dc2..5800d12 100644 --- a/cmd/root.go +++ b/cmd/root.go @@ -235,7 +235,7 @@ func init() { RootCmd.PersistentFlags().BoolVarP(&rootphylip, "phylip", "p", false, "Alignment is in phylip? default fasta") RootCmd.PersistentFlags().BoolVarP(&rootnexus, "nexus", "x", false, "Alignment is in nexus? default fasta") RootCmd.PersistentFlags().BoolVarP(&rootclustal, "clustal", "u", false, "Alignment is in clustal? default fasta") - RootCmd.PersistentFlags().BoolVarP(&rootstockholm, "stockholm", "s", false, "Alignment is in stockholm? default fasta") + RootCmd.PersistentFlags().BoolVarP(&rootstockholm, "stockholm", "k", false, "Alignment is in stockholm? default fasta") RootCmd.PersistentFlags().IntVarP(&rootcpus, "threads", "t", 1, "Number of threads") // If ignore is IGNORE_NONE: Does not ignore anything