How to cite

The main reference to cite is:

Langlois, R. E., Ho D. N., Frank, J., 2014. Arachnid: Automated Image-processing for Electron Microscopy. In Preparation.

You can find this reference along with other references to specific programs :ref:`below <citation-manager>` in a file format that is easy to import into your favorite citation manager.

Additional Papers

Langlois, R. E. Jordan, A. T., Pallesen, J., Ho, D. N., Rubinstein, J. L. and Frank, J. 2014. Automated particle picking for low-contrast macromolecules in cryo-electron microscopy. In press. URL http://www.sciencedirect.com/science/article/pii/S1047847714000525

Langlois, R., Ash, J. T., Pallesen, J., Frank, J., 2014. Fully Automated Particle Selection and Verification in Single-Particle Cryo-EM. In: Herman, G. T., Frank, J. (Eds.), Computational Methods for Three-Dimensional Microscopy Reconstruction. Springer, New York, pp. 97-132. URL http://dx.doi.org/10.1007/978-1-4614-9521-53

Langlois, R., Frank, J., Mar. 2011. A clarification of the terms used in comparing semi-automated particle selection algorithms in Cryo-EM. Journal of structural biology. URL http://www.ncbi.nlm.nih.gov/pubmed/21420497

Langlois, R., Pallesen, J., Frank, J., 2011. Reference-free particle selection enhanced with semi-supervised machine learning for cryo-electron microscopy. Journal of Structural Biology. URL http://dx.doi.org/10.1016/j.jsb.2011.06.004

Shaikh, T. R., Gao, H., Baxter, W. T., Asturias, F. J., Boisset, N., Leith, A., Frank, J., 2008. SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs. Nature Protocols 3 (12), 1941-1974. URL http://www.nature.com/doifinder/10.1038/nprot.2008.156