packages.bib

@article{Zhao_animalcules_2021,
   author = {Zhao, Y. and Federico, A. and Faits, T. and Manimaran, S. and Segre, D. and Monti, S. and Johnson, W. E.},
   title = {animalcules: interactive microbiome analytics and visualization in R},
   journal = {Microbiome},
   volume = {9},
   number = {1},
   pages = {76},
   DOI = {10.1186/s40168-021-01013-0},
   year = {2021},
   type = {Journal Article}
}

@article{McMurdie_Shiny_2015,
   author = {McMurdie, Paul J and Holmes, Susan},
   title = {Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking},
   journal = {Bioinformatics},
   volume = {31},
   number = {2},
   pages = {282-283},
   ISSN = {1367-4803},
   year = {2015},
   type = {Journal Article}
}


@article{Jin_Mian_2021,
   author = {Jin, Boyang Tom and Xu, Feng and Ng, Raymond T and Hogg, James C},
   title = {Mian: interactive web-based microbiome data table visualization and machine learning platform},
   journal = {Bioinformatics},
   volume = {38},
   number = {4},
   pages = {1176-1178},
   ISSN = {1367-4803},
   DOI = {10.1093/bioinformatics/btab754},
   year = {2021},
   type = {Journal Article}
}


@article{Kursa_Feature_2010,
   author = {Kursa, Miron B and Rudnicki, Witold R},
   title = {Feature selection with the Boruta package},
   journal = {J Stat Softw},
   volume = {36},
   number = {11},
   pages = {1-13},
   year = {2010},
   type = {Journal Article}
}


@article{Wilhelm_Predicting_2021,
   author = {Wilhelm, Roland C and van Es, Harold M and Buckley, Daniel H},
   title = {Predicting measures of soil health using the microbiome and supervised machine learning},
   journal = {Soil Biology and Biochemistry},
   pages = {108472},
   ISSN = {0038-0717},
   year = {2021},
   type = {Journal Article}
}


@article{Poore_Microbiome_2020,
   author = {Poore, Gregory D and Kopylova, Evguenia and Zhu, Qiyun and Carpenter, Carolina and Fraraccio, Serena and Wandro, Stephen and Kosciolek, Tomasz and Janssen, Stefan and Metcalf, Jessica and Song, Se Jin},
   title = {Microbiome analyses of blood and tissues suggest cancer diagnostic approach},
   journal = {Nature},
   volume = {579},
   number = {7800},
   pages = {567-574},
   ISSN = {1476-4687},
   year = {2020},
   type = {Journal Article}
}


@article{Tu_NCycDB_2018,
   author = {Tu, Qichao and Lin, Lu and Cheng, Lei and Deng, Ye and He, Zhili},
   title = {NCycDB: a curated integrative database for fast and accurate metagenomic profiling of nitrogen cycling genes},
   journal = {Bioinformatics},
   volume = {35},
   number = {6},
   pages = {1040-1048},
   abstract = {The nitrogen (N) cycle is a collection of important biogeochemical pathways in the Earth ecosystem and has gained extensive foci in ecology and environmental studies. Currently, shotgun metagenome sequencing has been widely applied to explore gene families responsible for N cycle processes. However, there are problems in applying publically available orthology databases to profile N cycle gene families in shotgun metagenomes, such as inefficient database searching, unspecific orthology groups and low coverage of N cycle genes and/or gene (sub)families.To solve these issues, this study built a manually curated integrative database (NCycDB) for fast and accurate profiling of N cycle gene (sub)families from shotgun metagenome sequencing data. NCycDB contains a total of 68 gene (sub)families and covers eight N cycle processes with 84 759 and 219 146 representative sequences at 95 and 100% identity cutoffs, respectively. We also identified 1958 homologous orthology groups and included corresponding sequences in the database to avoid false positive assignments due to ‘small database’ issues. We applied NCycDB to characterize N cycle gene (sub)families in 52 shotgun metagenomes from the Global Ocean Sampling expedition. Further analysis showed that the structure and composition of N cycle gene families were most strongly correlated with latitude and temperature. NCycDB is expected to facilitate N cycle studies via shotgun metagenome sequencing approaches in various environments. The framework developed in this study can be served as a good reference to build similar knowledge-based functional gene databases in various processes and pathways.NCycDB database files are available at https://github.com/qichao1984/NCyc.Supplementary data are available at Bioinformatics online.},
   ISSN = {1367-4803},
   DOI = {10.1093/bioinformatics/bty741},
   url = {https://doi.org/10.1093/bioinformatics/bty741},
   year = {2018},
   type = {Journal Article}
}


@article{Truong_MeTApHLaN2_2015,
   author = {Truong, Duy Tin and Franzosa, Eric A and Tickle, Timothy L and Scholz, Matthias and Weingart, George and Pasolli, Edoardo and Tett, Adrian and Huttenhower, Curtis and Segata, Nicola},
   title = {MetaPhlAn2 for enhanced metagenomic taxonomic profiling},
   journal = {Nature methods},
   volume = {12},
   number = {10},
   pages = {902-903},
   ISSN = {1548-7091},
   year = {2015},
   type = {Journal Article}
}

@article{Ramette_Multivariate_2007,
   author = {Ramette, A.},
   title = {Multivariate analyses in microbial ecology},
   journal = {FEMS Microbiol Ecol},
   volume = {62},
   number = {2},
   pages = {142-60},
   DOI = {10.1111/j.1574-6941.2007.00375.x},
   year = {2007},
   type = {Journal Article}
}


@article{Anderson_Navigating_2011,
   author = {Anderson, M. J. and Crist, T. O. and Chase, J. M. and Vellend, M. and Inouye, B. D. and Freestone, A. L. and Sanders, N. J. and Cornell, H. V. and Comita, L. S. and Davies, K. F. and Harrison, S. P. and Kraft, N. J. and Stegen, J. C. and Swenson, N. G.},
   title = {Navigating the multiple meanings of beta diversity: a roadmap for the practicing ecologist},
   journal = {Ecology Letters},
   volume = {14},
   number = {1},
   pages = {19-28},
   DOI = {10.1111/j.1461-0248.2010.01552.x},
   year = {2011},
   type = {Journal Article}
}


@article{Tuomisto_diversity_2010,
   author = {Tuomisto, Hanna},
   title = {A diversity of beta diversities: straightening up a concept gone awry. Part 1. Defining beta diversity as a function of alpha and gamma diversity},
   journal = {Ecography},
   volume = {33},
   number = {1},
   pages = {2-22},
   ISSN = {1600-0587},
   year = {2010},
   type = {Journal Article}
}


@article{Wood_Improved_2019,
   author = {Wood, D. E. and Lu, J. and Langmead, B.},
   title = {Improved metagenomic analysis with Kraken 2},
   journal = {Genome Biol},
   volume = {20},
   number = {1},
   pages = {257},
   DOI = {10.1186/s13059-019-1891-0},
   year = {2019},
   type = {Journal Article}
}


@article{Gibbons_twodynamic_2017,
   author = {Gibbons, S. M. and Kearney, S. M. and Smillie, C. S. and Alm, E. J.},
   title = {Two dynamic regimes in the human gut microbiome},
   journal = {PLoS Comput Biol},
   volume = {13},
   number = {2},
   pages = {e1005364},
   DOI = {10.1371/journal.pcbi.1005364},
   year = {2017},
   type = {Journal Article}
}


@article{Li_expectation_2019,
   author = {Li, C. and Chng, K. R. and Kwah, J. S. and Av-Shalom, T. V. and Tucker-Kellogg, L. and Nagarajan, N.},
   title = {An expectation-maximization algorithm enables accurate ecological modeling using longitudinal microbiome sequencing data},
   journal = {Microbiome},
   volume = {7},
   number = {1},
   pages = {118},
   DOI = {10.1186/s40168-019-0729-z},
   year = {2019},
   type = {Journal Article}
}

@article{Franzosa_Species_2018,
   author = {Franzosa, Eric A. and McIver, Lauren J. and Rahnavard, Gholamali and Thompson, Luke R. and Schirmer, Melanie and Weingart, George and Lipson, Karen Schwarzberg and Knight, Rob and Caporaso, J. Gregory and Segata, Nicola and Huttenhower, Curtis},
   title = {Species-level functional profiling of metagenomes and metatranscriptomes},
   journal = {Nature Methods},
   volume = {15},
   number = {11},
   pages = {962-968},
   ISSN = {1548-7105},
   DOI = {10.1038/s41592-018-0176-y},
   year = {2018},
   type = {Journal Article}
}


@article{Carpenter_tidyMicro_2021,
   author = {Carpenter, C. M. and Frank, D. N. and Williamson, K. and Arbet, J. and Wagner, B. D. and Kechris, K. and Kroehl, M. E.},
   title = {tidyMicro: a pipeline for microbiome data analysis and visualization using the tidyverse in R},
   journal = {BMC Bioinformatics},
   volume = {22},
   number = {1},
   pages = {41},
   DOI = {10.1186/s12859-021-03967-2},
   year = {2021},
   type = {Journal Article}
}


@article{Reeder_MicrobiomeExplorer_2021,
   author = {Reeder, J. and Huang, M. and Kaminker, J. S. and Paulson, J. N.},
   title = {MicrobiomeExplorer: an R package for the analysis and visualization of microbial communities},
   journal = {Bioinformatics},
   volume = {37},
   number = {9},
   pages = {1317-1318},
   DOI = {10.1093/bioinformatics/btaa838},
   year = {2021},
   type = {Journal Article}
}


@article{Zhang_Local_2020,
   author = {Zhang, X. and Liu, S. and Wang, J. and Huang, Y. and Freedman, Z. and Fu, S. and Liu, K. and Wang, H. and Li, X. and Yao, M. and Liu, X. and Schuler, J.},
   title = {Local community assembly mechanisms shape soil bacterial beta diversity patterns along a latitudinal gradient},
   journal = {Nat Commun},
   volume = {11},
   number = {1},
   pages = {5428},
   DOI = {10.1038/s41467-020-19228-4},
   year = {2020},
   type = {Journal Article}
}



@article{Lim_Large_2020,
   author = {Lim, Roktaek and Cabatbat, Josephine Jill T. and Martin, Thomas L. P. and Kim, Haneul and Kim, Seunghyeon and Sung, Jaeyun and Ghim, Cheol-Min and Kim, Pan-Jun},
   title = {Large-scale metabolic interaction network of the mouse and human gut microbiota},
   journal = {Scientific Data},
   volume = {7},
   number = {1},
   ISSN = {2052-4463},
   DOI = {10.1038/s41597-020-0516-5},
   year = {2020},
   type = {Journal Article}
}


@article{Paulson_Differential_2013,
   author = {Paulson, Joseph N and Stine, O Colin and Bravo, Héctor Corrada and Pop, Mihai},
   title = {Differential abundance analysis for microbial marker-gene surveys},
   journal = {Nature methods},
   volume = {10},
   number = {12},
   pages = {1200-1202},
   ISSN = {1548-7091},
   year = {2013},
   type = {Journal Article}
}


@article{Anderson_Austral_2001,
   author = {Anderson, M. J.},
   title = {A new method for non-parametric multivariate analysis of variance},
   journal = {Austral Ecology},
   number = {26},
   pages = {32–46},
   year = {2001},
   type = {Journal Article}
}



@Manual{R6_Winston,
	title = {R6: Encapsulated Classes with Reference Semantics},
	author = {Winston Chang},
	year = {2020},
	note = {R package version 2.5.0},
	url = {https://CRAN.R-project.org/package=R6},
}
  
@article{Price_theseus_2018,
   author = {Price, Jacob R. and Woloszynek, Stephen and Rosen, Gail and Sales, Christopher M.},
   title = {theseus - An R package for the analysis and visualization},
   journal = {bioRxiv},
   DOI = {10.1101/295675},
   year = {2018},
   type = {Journal Article}
}

@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2021},
  url = {https://www.R-project.org/},
}

@Manual{R-bookdown,
  title = {bookdown: Authoring Books and Technical Documents with R Markdown},
  author = {Yihui Xie},
  year = {2021},
  note = {R package version 0.22},
  url = {https://CRAN.R-project.org/package=bookdown},
}

@Manual{R-knitr,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2021},
  note = {R package version 1.31},
  url = {https://yihui.org/knitr/},
}

@Manual{R-rmarkdown,
  title = {rmarkdown: Dynamic Documents for R},
  author = {JJ Allaire and Yihui Xie and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
  year = {2021},
  note = {R package version 2.7},
  url = {https://CRAN.R-project.org/package=rmarkdown},
}

@Book{bookdown2016,
  title = {bookdown: Authoring Books and Technical Documents with {R} Markdown},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2016},
  note = {ISBN 978-1138700109},
  url = {https://bookdown.org/yihui/bookdown},
}

@Book{knitr2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {https://yihui.org/knitr/},
}

@InCollection{knitr2014,
  booktitle = {Implementing Reproducible Computational Research},
  editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
  title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  year = {2014},
  note = {ISBN 978-1466561595},
  url = {http://www.crcpress.com/product/isbn/9781466561595},
}

@Book{rmarkdown2018,
  title = {R Markdown: The Definitive Guide},
  author = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2018},
  note = {ISBN 9781138359338},
  url = {https://bookdown.org/yihui/rmarkdown},
}

@Book{rmarkdown2020,
  title = {R Markdown Cookbook},
  author = {Yihui Xie and Christophe Dervieux and Emily Riederer},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2020},
  note = {ISBN 9780367563837},
  url = {https://bookdown.org/yihui/rmarkdown-cookbook},
}


@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2016},
  url = {https://www.R-project.org/},
}
@Manual{R-bookdown,
  title = {bookdown: Authoring Books and Technical Documents with R Markdown},
  author = {Yihui Xie},
  year = {2016},
  note = {R package version 0.3.9},
  url = {https://github.com/rstudio/bookdown},
}
@Manual{R-knitr,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2016},
  note = {R package version 1.15.1},
  url = {https://CRAN.R-project.org/package=knitr},
}
@Manual{R-rmarkdown,
  title = {rmarkdown: Dynamic Documents for R},
  author = {JJ Allaire and Joe Cheng and Yihui Xie and Jonathan McPherson and Winston Chang and Jeff Allen and Hadley Wickham and Aron Atkins and Rob Hyndman},
  year = {2016},
  note = {R package version 1.3},
  url = {https://CRAN.R-project.org/package=rmarkdown},
}




@article{Theil_rANOMALY_2021,
   author = {Theil, S. and Rifa, E.},
   title = {rANOMALY: AmplicoN wOrkflow for Microbial community AnaLYsis},
   journal = {F1000Res},
   volume = {10},
   pages = {7},
   DOI = {10.12688/f1000research.27268.1},
   url = {http://www.ncbi.nlm.nih.gov/pubmed/33537122},
   year = {2021},
   type = {Journal Article}
}


@article{Wemheuer_Tax4Fun2_2020,
   author = {Wemheuer, Franziska and Taylor, Jessica A. and Daniel, Rolf and Johnston, Emma and Meinicke, Peter and Thomas, Torsten and Wemheuer, Bernd},
   title = {Tax4Fun2: prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene sequences},
   journal = {Environmental Microbiome},
   volume = {15},
   number = {1},
   ISSN = {2524-6372},
   DOI = {10.1186/s40793-020-00358-7},
   year = {2020},
   type = {Journal Article}
}


@article{Polme_FungalTraits_2020,
   author = {Põlme, Sergei and Abarenkov, Kessy and Henrik Nilsson, R. and Lindahl, Björn D. and Clemmensen, Karina Engelbrecht and Kauserud, Havard and Nguyen, Nhu and Kjøller, Rasmus and Bates, Scott T. and Baldrian, Petr and Frøslev, Tobias Guldberg and Adojaan, Kristjan and Vizzini, Alfredo and Suija, Ave and Pfister, Donald and Baral, Hans-Otto and Järv, Helle and Madrid, Hugo and Nordén, Jenni and Liu, Jian-Kui and Pawlowska, Julia and Põldmaa, Kadri and Pärtel, Kadri and Runnel, Kadri and Hansen, Karen and Larsson, Karl-Henrik and Hyde, Kevin David and Sandoval-Denis, Marcelo and Smith, Matthew E. and Toome-Heller, Merje and Wijayawardene, Nalin N. and Menolli, Nelson and Reynolds, Nicole K. and Drenkhan, Rein and Maharachchikumbura, Sajeewa S. N. and Gibertoni, Tatiana B. and Læssøe, Thomas and Davis, William and Tokarev, Yuri and Corrales, Adriana and Soares, Adriene Mayra and Agan, Ahto and Machado, Alexandre Reis and Argüelles-Moyao, Andrés and Detheridge, Andrew and de Meiras-Ottoni, Angelina and Verbeken, Annemieke and Dutta, Arun Kumar and Cui, Bao-Kai and Pradeep, C. K. and Marín, César and Stanton, Daniel and Gohar, Daniyal and Wanasinghe, Dhanushka N. and Otsing, Eveli and Aslani, Farzad and Griffith, Gareth W. and Lumbsch, Thorsten H. and Grossart, Hans-Peter and Masigol, Hossein and Timling, Ina and Hiiesalu, Inga and Oja, Jane and Kupagme, John Y. and Geml, József and Alvarez-Manjarrez, Julieta and Ilves, Kai and Loit, Kaire and Adamson, Kalev and Nara, Kazuhide and Küngas, Kati and Rojas-Jimenez, Keilor and Bitenieks, Krišs and Irinyi, Laszlo and Nagy, László G. and Soonvald, Liina and Zhou, Li-Wei and Wagner, Lysett and Aime, M. Catherine and Öpik, Maarja and Mujica, María Isabel and Metsoja, Martin and Ryberg, Martin and Vasar, Martti and Murata, Masao and Nelsen, Matthew P. and Cleary, Michelle and Samarakoon, Milan C. and Doilom, Mingkwan and Bahram, Mohammad and Hagh-Doust, Niloufar and Dulya, Olesya and Johnston, Peter and Kohout, Petr and Chen, Qian and Tian, Qing and Nandi, Rajasree and Amiri, Rasekh and Perera, Rekhani Hansika and dos Santos Chikowski, Renata and others },
   title = {FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles},
   journal = {Fungal Diversity},
   volume = {105},
   number = {1},
   pages = {1-16},
   ISSN = {1878-9129},
   DOI = {10.1007/s13225-020-00466-2},
   url = {https://doi.org/10.1007/s13225-020-00466-2},
   year = {2020},
   type = {Journal Article}
}


@article{Bolyen_Reproducible_2019,
   author = {Bolyen, E. and Rideout, J. R. and Dillon, M. R. and Bokulich, N. A. and Abnet, C. C. and Al-Ghalith, G. A. and Alexander, H. and Alm, E. J. and Arumugam, M. and Asnicar, F. and Bai, Y. and Bisanz, J. E. and Bittinger, K. and Brejnrod, A. and Brislawn, C. J. and Brown, C. T. and Callahan, B. J. and Caraballo-Rodriguez, A. M. and Chase, J. and Cope, E. K. and Da Silva, R. and Diener, C. and Dorrestein, P. C. and Douglas, G. M. and Durall, D. M. and Duvallet, C. and Edwardson, C. F. and Ernst, M. and Estaki, M. and Fouquier, J. and Gauglitz, J. M. and Gibbons, S. M. and Gibson, D. L. and Gonzalez, A. and Gorlick, K. and Guo, J. and Hillmann, B. and Holmes, S. and Holste, H. and Huttenhower, C. and Huttley, G. A. and Janssen, S. and Jarmusch, A. K. and Jiang, L. and Kaehler, B. D. and Kang, K. B. and Keefe, C. R. and Keim, P. and Kelley, S. T. and Knights, D. and Koester, I. and Kosciolek, T. and Kreps, J. and Langille, M. G. I. and Lee, J. and Ley, R. and Liu, Y. X. and Loftfield, E. and Lozupone, C. and Maher, M. and Marotz, C. and Martin, B. D. and McDonald, D. and McIver, L. J. and Melnik, A. V. and Metcalf, J. L. and Morgan, S. C. and Morton, J. T. and Naimey, A. T. and Navas-Molina, J. A. and Nothias, L. F. and Orchanian, S. B. and Pearson, T. and Peoples, S. L. and Petras, D. and Preuss, M. L. and Pruesse, E. and Rasmussen, L. B. and Rivers, A. and Robeson, M. S., 2nd and Rosenthal, P. and Segata, N. and Shaffer, M. and Shiffer, A. and Sinha, R. and Song, S. J. and Spear, J. R. and Swafford, A. D. and Thompson, L. R. and Torres, P. J. and Trinh, P. and Tripathi, A. and Turnbaugh, P. J. and Ul-Hasan, S. and van der Hooft, J. J. J. and Vargas, F. and Vazquez-Baeza, Y. and Vogtmann, E. and von Hippel, M. and Walters, W. and others },
   title = {Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2},
   journal = {Nat Biotechnol},
   volume = {37},
   number = {8},
   pages = {852-857},
   DOI = {10.1038/s41587-019-0209-9},
   url = {http://www.ncbi.nlm.nih.gov/pubmed/31341288},
   year = {2019},
   type = {Journal Article}
}


@article{Liu_microeco_2021,
    author = {Liu, Chi and Cui, Yaoming and Li, Xiangzhen and Yao, Minjie},
    title = {{microeco: An R package for data mining in microbial community ecology}},
    journal = {FEMS Microbiol. Ecol.},
    year = {2021},
    volume = {97},
    number = {2},
    pages = {fiaa255},
    issn = {0168-6496},
    type = {Journal Article}
}



@article{Kurtz_Sparse_2015,
   author = {Kurtz, Z. D. and Muller, C. L. and Miraldi, E. R. and Littman, D. R. and Blaser, M. J. and Bonneau, R. A.},
   title = {Sparse and compositionally robust inference of microbial ecological networks},
   journal = {PLoS Comput Biol},
   volume = {11},
   number = {5},
   pages = {e1004226},
   ISSN = {1553-7358 (Electronic)
1553-734X (Linking)},
   DOI = {10.1371/journal.pcbi.1004226},
   url = {http://www.ncbi.nlm.nih.gov/pubmed/25950956},
   year = {2015},
   type = {Journal Article}
}



@article{Chase_null_2011,
   author = {Chase, Jonathan M and Kraft, Nathan JB and Smith, Kevin G and Vellend, Mark and Inouye, Brian D},
   title = {Using null models to disentangle variation in community dissimilarity from variation in α-diversity},
   journal = {Ecosphere},
   volume = {2},
   number = {2},
   pages = {art24},
   ISSN = {2150-8925},
   DOI = {10.1890/ES10-00117.1},
   year = {2011},
   type = {Journal Article}
}



@article{Mande_MetagenoNets_2020,
   author = {Mande, Sharmila S. and Yadav, Deepak and Singh, Rashmi and Nagpal, Sunil},
   title = {MetagenoNets: comprehensive inference and meta-insights for microbial correlation networks},
   journal = {Nucleic Acids Research},
   volume = {48},
   number = {W1},
   pages = {W572-W579},
   ISSN = {0305-1048
1362-4962},
   DOI = {10.1093/nar/gkaa254},
   year = {2020},
   type = {Journal Article}
}



@article{Gao_Strong_2019,
   author = {Gao, Cheng and Montoya, Liliam and Xu, Ling and Madera, Mary and Hollingsworth, Joy and Purdom, Elizabeth and Hutmacher, Robert B and Dahlberg, Jeffery A and Coleman-Derr, Devin and Lemaux, Peggy G},
   title = {Strong succession in arbuscular mycorrhizal fungal communities},
   journal = {The ISME journal},
   volume = {13},
   number = {1},
   pages = {214},
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