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NEWS

Version 1.0.2

Changes to SAM2FLStock

  • Fixed bug when observations in the SAM model fit do not include years but instead an index for the years (1, 2, 3, …).

Version 1.0.1

Changes to SAM2FLStock

  • This function can now handle multi-fleet SAM model fits. An example is given in the documentation for this method (see ?SAM2FLStock).

  • Added stock_only argument. If set to TRUE, catch data (numbers, weights) are ignored and only stock data (numbers, SSB, etc.) are returned.

Version 1.0

Changes since version 0.x

Changes to SAM2FLStock

  • Fix when SAM model fit included age 0 but without catches for this age.

  • Fix setting of plusgroup.

  • New arguments mat_est, stock.wt_est, catch.wt_est, m_est (logical TRUE/FALSE) for returning estimates of biological data from SAM, if they are estimated by SAM.

  • New argument spinoutyear (logical TRUE/FALSE) to include/exclude estimates of biological data from SAM beyond last data year.

  • Generic methods for SAM2FLStock updated when argument stk is provided as a template. In the returned output, stk is used as template and all slots are updated, instead of only those corresponding to catch, fishing mortality and stock size.

Changes to SAM_uncertainty

  • Name of output list element with catch numbers including uncertainty changed from catch_n to catch.n so that it follows the same convention as stock.n.

General changes

  • Updated help files.