DESCRIPTION

Package: Site2Target
Type: Package
Title: An R package to associate peaks and target genes
Version: 0.99.3
Authors@R: person("Peyman Zarrineh", email="peyman.zarrineh@manchester.ac.uk", role=c("cre", "aut"), comment = c(ORCID = "0000-0003-4820-4101"))
Description: Statistics implemented for both peak-wise and gene-wise associations. In peak-wise associations, the p-value of the target genes of a given set of peaks are calculated. Negative binomial or Poisson distributions can be used for modeling the unweighted peaks targets and log-nromal can be used to model the weighted peaks. In gene-wise associations a table consisting of a set of genes, mapped to specific peaks, is generated using the given rules.
BugReports: https://github.com/fls-bioinformatics-core/Site2Target/issues
Depends: R (>= 4.4)
License: GPL-2
Encoding: UTF-8
LazyData: false
Imports: S4Vectors, stats, utils, BiocGenerics, GenomeInfoDb, MASS, IRanges, GenomicRanges
biocViews: Annotation, ChIPSeq, Software, Epigenetics, GeneExpression, GeneTarget
RoxygenNote: 7.3.2
Suggests: BiocStyle, knitr, rmarkdown
VignetteBuilder: knitr