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bugfix: handle edge case where no ids fail the 3p end filters

SamBryce-Smithpushed 1 commit to no_ales_fix • c6d8406…ca8644b • 
2 days ago

bugfix: return empty objects when no extensions found

SamBryce-Smithpushed 1 commit to no_ales_fix • 3dd19ef…c6d8406 • 
2 days ago

handle edge case where no putative novel ALEs found

SamBryce-Smithcreated no_ales_fix • 3dd19ef • 
7 days ago

Deleted branch

SamBryce-Smithdeleted update_filtering_plumbing • 
on Jan 19, 2024

Deleted branch

SamBryce-Smithdeleted v0.2.0 • 
on Jan 19, 2024

Deleted branch

SamBryce-Smithdeleted master • 
on Jan 19, 2024

v0.2.0 (#39)

SamBryce-Smithcreated main • 04a10a0 • 
on Jan 19, 2024

v0.2.0 (#39)

Pull request merge
SamBryce-Smithpushed 1 commit to master • e2f7a81…04a10a0 • 
on Jan 19, 2024

tiny formatting change

SamBryce-Smithpushed 1 commit to v0.2.0 • 2eb3976…5e579e2 • 
on Jan 19, 2024

add license information

SamBryce-Smithpushed 2 commits to v0.2.0 • 0166248…2eb3976 • 
on Jan 19, 2024

remove empty md

SamBryce-Smithpushed 4 commits to v0.2.0 • 5ee4485…0166248 • 
on Jan 19, 2024

remove sge profile (not working)

SamBryce-Smithpushed 1 commit to v0.2.0 • b0d7bcc…5ee4485 • 
on Jan 5, 2024

notes on ID mapping files. Remove redundancy for event_type descriptions

SamBryce-Smithpushed 3 commits to v0.2.0 • 8d9fefd…b0d7bcc • 
on Jan 5, 2024

add note on specifying base condition in sample table

SamBryce-Smithpushed 2 commits to v0.2.0 • 668bd2e…8d9fefd • 
on Jan 4, 2024

update readme

SamBryce-Smithpushed 1 commit to v0.2.0 • ffaf622…668bd2e • 
on Jan 3, 2024

Clean up README

SamBryce-Smithpushed 1 commit to v0.2.0 • aa03455…ffaf622 • 
on Jan 3, 2024

Deleted branch

SamBryce-Smithdeleted dexseq • 
on Apr 25, 2023

Replace SatuRn with DEXSeq (#47)

Pull request merge
SamBryce-Smithpushed 1 commit to v0.2.0 • 66a77e7…aa03455 • 
on Apr 25, 2023

add dexseq_apa to cluster.yaml

SamBryce-Smithpushed 2 commits to dexseq • 3b1da9c…5ea3878 • 
on Apr 25, 2023

switch saturn for dexseq in differential_apa

SamBryce-Smithcreated dexseq • 3b1da9c • 
on Apr 20, 2023

example of saturn output

SamBryce-Smithpushed 1 commit to v0.2.0 • 10a4951…66a77e7 • 
on Apr 13, 2023

correct salmon index path in params if use precomputed index

SamBryce-Smithpushed 1 commit to v0.2.0 • a869bc8…10a4951 • 
on Mar 30, 2023

provide conda prefix as command line arg

SamBryce-Smithpushed 1 commit to v0.2.0 • 7bf8abf…a869bc8 • 
on Mar 30, 2023

pass config file as command line arg

SamBryce-Smithpushed 1 commit to v0.2.0 • 17effde…7bf8abf • 
on Mar 30, 2023

dryrun - option to use precomputed salmon index and skip redundant co…

SamBryce-Smithpushed 1 commit to v0.2.0 • e17dd09…17effde • 
on Mar 30, 2023

optionally pass bias/other cl flags to salmon quant

SamBryce-Smithpushed 1 commit to v0.2.0 • b6281ea…e17dd09 • 
on Mar 29, 2023