Activity
bugfix: handle edge case where no ids fail the 3p end filters
bugfix: handle edge case where no ids fail the 3p end filters
bugfix: return empty objects when no extensions found
bugfix: return empty objects when no extensions found
handle edge case where no putative novel ALEs found
handle edge case where no putative novel ALEs found
Deleted branch
Deleted branch
Deleted branch
v0.2.0 (#39)
v0.2.0 (#39)
v0.2.0 (#39)
v0.2.0 (#39)
Pull request merge
tiny formatting change
tiny formatting change
add license information
add license information
remove empty md
remove empty md
remove sge profile (not working)
remove sge profile (not working)
notes on ID mapping files. Remove redundancy for event_type descriptions
notes on ID mapping files. Remove redundancy for event_type descriptions
add note on specifying base condition in sample table
add note on specifying base condition in sample table
update readme
update readme
Clean up README
Clean up README
Deleted branch
Replace SatuRn with DEXSeq (#47)
Replace SatuRn with DEXSeq (#47)
Pull request merge
add dexseq_apa to cluster.yaml
add dexseq_apa to cluster.yaml
switch saturn for dexseq in differential_apa
switch saturn for dexseq in differential_apa
example of saturn output
example of saturn output
correct salmon index path in params if use precomputed index
correct salmon index path in params if use precomputed index
provide conda prefix as command line arg
provide conda prefix as command line arg
pass config file as command line arg
pass config file as command line arg
dryrun - option to use precomputed salmon index and skip redundant co…
dryrun - option to use precomputed salmon index and skip redundant co…
optionally pass bias/other cl flags to salmon quant
optionally pass bias/other cl flags to salmon quant