rseq.smk - BAM index file paths are incorrect (causing occasional crashes with junction_saturation.py)

[SamBryce-Smith]

rseqc.smk

rule read_distribution:
    input:
        bam = os.path.join(STAR_OUTDIR, "{sample}.Aligned.sorted.out.bam"),
        idx = os.path.join(STAR_OUTDIR, "{sample}.Aligned.sorted.out.bam")

This is the case for all RSeQC rules. Might be cause of slow run times for other tools that do not error out when index is not present. Very quick fix

[SamBryce-Smith]

Example errors