diff --git a/rules/rseqc.smk b/rules/rseqc.smk
index 83e0ca3..a351d55 100644
--- a/rules/rseqc.smk
+++ b/rules/rseqc.smk
@@ -82,7 +82,7 @@ rule all_rseqc:
 rule infer_experiment:
     input:
         bam = os.path.join(STAR_OUTDIR, "{sample}.Aligned.sorted.out.bam"),
-        idx = os.path.join(STAR_OUTDIR, "{sample}.Aligned.sorted.out.bam")
+        idx = os.path.join(STAR_OUTDIR, "{sample}.Aligned.sorted.out.bam.bai")
 
     output:
         os.path.join(RSEQC_OUTDIR, "{sample}.infer_experiment.txt")
@@ -107,7 +107,7 @@ rule infer_experiment:
 rule inner_distance_freq:
     input:
         bam = os.path.join(STAR_OUTDIR, "{sample}.Aligned.sorted.out.bam"),
-        idx = os.path.join(STAR_OUTDIR, "{sample}.Aligned.sorted.out.bam")
+        idx = os.path.join(STAR_OUTDIR, "{sample}.Aligned.sorted.out.bam.bai")
 
     output:
         os.path.join(RSEQC_OUTDIR, "{sample}.inner_distance_freq.txt")
@@ -130,7 +130,7 @@ rule inner_distance_freq:
 rule junction_saturation:
     input:
         bam = os.path.join(STAR_OUTDIR, "{sample}.Aligned.sorted.out.bam"),
-        idx = os.path.join(STAR_OUTDIR, "{sample}.Aligned.sorted.out.bam")
+        idx = os.path.join(STAR_OUTDIR, "{sample}.Aligned.sorted.out.bam.bai")
 
     output:
         os.path.join(RSEQC_OUTDIR, "{sample}.junctionSaturation_plot.r")
@@ -153,7 +153,7 @@ rule junction_saturation:
 rule read_distribution:
     input:
         bam = os.path.join(STAR_OUTDIR, "{sample}.Aligned.sorted.out.bam"),
-        idx = os.path.join(STAR_OUTDIR, "{sample}.Aligned.sorted.out.bam")
+        idx = os.path.join(STAR_OUTDIR, "{sample}.Aligned.sorted.out.bam.bai")
 
     output:
         os.path.join(RSEQC_OUTDIR, "{sample}.read_distribution.txt")