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diff --git a/electrode_models/Dixi-D08-15CM.elecdef b/electrode_models/Dixi-D08-15CM.elecdef
new file mode 100755
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diff --git a/electrode_models/Medtronic_3389-long.elecdef b/electrode_models/Medtronic_3389-long.elecdef
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diff --git a/electrode_models/PMT-D08-14A.elecdef b/electrode_models/PMT-D08-14A.elecdef
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new file mode 100755
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diff --git a/electrode_models/microwire.elecdef b/electrode_models/microwire.elecdef
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+F0.0
+aF0.0
+aF0.25
+asS'length'
+p22
+F0.5
+sS'shape'
+p23
+S'cylinder'
+p24
+sS'vector'
+p25
+(lp26
+F0.0
+aF0.0
+aF1.0
+asS'position'
+p27
+(lp28
+F0.0
+aF0.0
+aF0.0
+asS'type'
+p29
+S'Plot'
+p30
+sS'axis'
+p31
+S'Axe Z'
+p32
+ss.
\ No newline at end of file
diff --git a/epilepsy-toolbox/epilepsy.png b/epilepsy-toolbox/epilepsy.png
new file mode 100755
index 0000000..f55785a
Binary files /dev/null and b/epilepsy-toolbox/epilepsy.png differ
diff --git a/epilepsy-toolbox/epilepsy.py b/epilepsy-toolbox/epilepsy.py
new file mode 100755
index 0000000..5d5eb8f
--- /dev/null
+++ b/epilepsy-toolbox/epilepsy.py
@@ -0,0 +1,33 @@
+#  This software and supporting documentation are distributed by
+#      Institut Federatif de Recherche 49
+#      CEA/NeuroSpin, Batiment 145,
+#      91191 Gif-sur-Yvette cedex
+#      France
+#
+# This software is governed by the CeCILL license version 2 under
+# French law and abiding by the rules of distribution of free software.
+# You can  use, modify and/or redistribute the software under the 
+# terms of the CeCILL license version 2 as circulated by CEA, CNRS
+# and INRIA at the following URL "http://www.cecill.info". 
+#
+# As a counterpart to the access to the source code and  rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty  and the software's author,  the holder of the
+# economic rights,  and the successive licensors  have only  limited
+# liability.
+#
+# In this respect, the user's attention is drawn to the risks associated
+# with loading,  using,  modifying and/or developing or reproducing the
+# software by the user in light of its specific status of free software,
+# that may mean  that it is complicated to manipulate,  and  that  also
+# therefore means  that it is reserved for developers  and  experienced
+# professionals having in-depth computer knowledge. Users are therefore
+# encouraged to load and test the software's suitability as regards their
+# requirements in conditions enabling the security of their systems and/or 
+# data to be ensured and,  more generally, to use and operate it in the 
+# same conditions as regards security.
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL license version 2 and that you accept its terms.
+icon = 'epilepsy.png'
+userName = 'Epilepsy'
diff --git a/epilepsy-toolbox/hierarchies/brainvisa-3.1.0/electrodes.py b/epilepsy-toolbox/hierarchies/brainvisa-3.1.0/electrodes.py
new file mode 100755
index 0000000..9bfe3ce
--- /dev/null
+++ b/epilepsy-toolbox/hierarchies/brainvisa-3.1.0/electrodes.py
@@ -0,0 +1,73 @@
+# -*- coding: utf-8 -*-
+#  This software and supporting documentation are distributed by
+#      Institut des Neurosciences de Grenoble - INSERM U836
+#      France
+#
+# This software is governed by the CeCILL license version 2 under
+# French law and abiding by the rules of distribution of free software.
+# You can  use, modify and/or redistribute the software under the 
+# terms of the CeCILL license version 2 as circulated by CEA, CNRS
+# and INRIA at the following URL "http://www.cecill.info". 
+#
+# As a counterpart to the access to the source code and  rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty  and the software's author,  the holder of the
+# economic rights,  and the successive licensors  have only  limited
+# liability.
+#
+# In this respect, the user's attention is drawn to the risks associated
+# with loading,  using,  modifying and/or developing or reproducing the
+# software by the user in light of its specific status of free software,
+# that may mean  that it is complicated to manipulate,  and  that  also
+# therefore means  that it is reserved for developers  and  experienced
+# professionals having in-depth computer knowledge. Users are therefore
+# encouraged to load and test the software's suitability as regards their
+# requirements in conditions enabling the security of their systems and/or 
+# data to be ensured and,  more generally, to use and operate it in the 
+# same conditions as regards security.
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL license version 2 and that you accept its terms.
+
+include( 'base' )
+include( 'anatomy' )
+
+insert( '{protocol}/{subject}','implantation', SetType('Electrode Implantation Directory'), SetContent(
+  "<subject>_{implantation_session}", SetType('Electrode Implantation'), # In case there is more than one
+  "<subject>", SetType('Electrode Implantation'),  SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>_{implantation_session}", SetType('Electrodes Labels'), # In case there is more than one
+  "<subject>", SetType('Electrodes Labels'),  SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>", SetType('Electrode Implantation PTS'), SetWeakAttr( 'no_ref_name', 'True', 'implantation_session', 'default' ),
+  "<subject>_{ref_name}", SetType('Electrode Implantation PTS'),  SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>_{ref_name}_Pos", SetType('Electrode Implantation Position TXT'),  SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>_{ref_name}_Name", SetType('Electrode Implantation Name TXT'), SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>_Pos", SetType('Electrode Implantation Position TXT'), SetWeakAttr( 'no_ref_name', 'True', 'implantation_session', 'default' ),
+  "<subject>_Name", SetType('Electrode Implantation Name TXT'), SetWeakAttr( 'no_ref_name', 'True', 'implantation_session', 'default' ),
+  "<subject>_{implantation_session}", SetType('Electrode Implantation PTS'), SetWeakAttr( 'no_ref_name', 'True' ),
+  "<subject>_{implantation_session}_{ref_name}", SetType('Electrode Implantation PTS'), 
+  "<subject>_{implantation_session}_{ref_name}_Pos", SetType('Electrode Implantation Position TXT'), 
+  "<subject>_{implantation_session}_{ref_name}_Name", SetType('Electrode Implantation Name TXT'),
+  "<subject>_{implantation_session}_Pos", SetType('Electrode Implantation Position TXT'), SetWeakAttr( 'no_ref_name', 'True' ),
+  "<subject>_{implantation_session}_Name", SetType('Electrode Implantation Name TXT'), SetWeakAttr( 'no_ref_name', 'True' ),
+  "<subject>_sag", SetType('Electrode Implantation Sagittal Image'), SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>_coro", SetType('Electrode Implantation Coronal Image'), SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>", SetType('Electrode Implantation Powerpoint report'), SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>", SetType('Electrode Implantation PDF report'), SetWeakAttr( 'implantation_session', 'default', 'planning', 'True' ),
+  "<subject>_SI", SetType('Electrode Implantation PDF report'), SetWeakAttr( 'implantation_session', 'default', 'planning', 'False' ),
+  "<subject>_elec", SetType('Electrode List PDF'), SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>_sag_{implantation_session}", SetType('Electrode Implantation Sagittal Image'), # In case there is more than one
+  "<subject>_coro_{implantation_session}", SetType('Electrode Implantation Coronal Image'), # In case there is more than one
+  "<subject>_{implantation_session}", SetType('Electrode Implantation Powerpoint report'), # In case there is more than one
+  "<subject>_{implantation_session}", SetType('Electrode Implantation PDF report'), SetWeakAttr('planning', 'True' ), 
+  "<subject>_SI_{implantation_session}", SetType('Electrode Implantation PDF report'), SetWeakAttr( 'implantation_session', 'default', 'planning', 'False' ),
+  "<subject>_elec_{implantation_session}", SetType('Electrode List PDF'), SetWeakAttr( 'implantation_session', 'default' ),
+  
+  )
+)
+
+# Protocol-specific electrode models
+insertFirst( '{protocol}', 'electrode_models', SetType('Electrode Model Directory'), SetContent(
+  '{model_name}', SetType('Electrode Model')  
+  )
+)
+
diff --git a/epilepsy-toolbox/hierarchies/brainvisa-3.1.0/electrodes.py~ b/epilepsy-toolbox/hierarchies/brainvisa-3.1.0/electrodes.py~
new file mode 100755
index 0000000..063542b
--- /dev/null
+++ b/epilepsy-toolbox/hierarchies/brainvisa-3.1.0/electrodes.py~
@@ -0,0 +1,71 @@
+# -*- coding: utf-8 -*-
+#  This software and supporting documentation are distributed by
+#      Institut des Neurosciences de Grenoble - INSERM U836
+#      France
+#
+# This software is governed by the CeCILL license version 2 under
+# French law and abiding by the rules of distribution of free software.
+# You can  use, modify and/or redistribute the software under the 
+# terms of the CeCILL license version 2 as circulated by CEA, CNRS
+# and INRIA at the following URL "http://www.cecill.info". 
+#
+# As a counterpart to the access to the source code and  rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty  and the software's author,  the holder of the
+# economic rights,  and the successive licensors  have only  limited
+# liability.
+#
+# In this respect, the user's attention is drawn to the risks associated
+# with loading,  using,  modifying and/or developing or reproducing the
+# software by the user in light of its specific status of free software,
+# that may mean  that it is complicated to manipulate,  and  that  also
+# therefore means  that it is reserved for developers  and  experienced
+# professionals having in-depth computer knowledge. Users are therefore
+# encouraged to load and test the software's suitability as regards their
+# requirements in conditions enabling the security of their systems and/or 
+# data to be ensured and,  more generally, to use and operate it in the 
+# same conditions as regards security.
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL license version 2 and that you accept its terms.
+
+include( 'base' )
+include( 'anatomy' )
+
+insert( '{protocol}/{subject}','implantation', SetType('Electrode Implantation Directory'), SetContent(
+  "<subject>_{implantation_session}", SetType('Electrode Implantation'), # In case there is more than one
+  "<subject>", SetType('Electrode Implantation'),  SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>", SetType('Electrode Implantation PTS'), SetWeakAttr( 'no_ref_name', 'True', 'implantation_session', 'default' ),
+  "<subject>_{ref_name}", SetType('Electrode Implantation PTS'),  SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>_{ref_name}_Pos", SetType('Electrode Implantation Position TXT'),  SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>_{ref_name}_Name", SetType('Electrode Implantation Name TXT'), SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>_Pos", SetType('Electrode Implantation Position TXT'), SetWeakAttr( 'no_ref_name', 'True', 'implantation_session', 'default' ),
+  "<subject>_Name", SetType('Electrode Implantation Name TXT'), SetWeakAttr( 'no_ref_name', 'True', 'implantation_session', 'default' ),
+  "<subject>_{implantation_session}", SetType('Electrode Implantation PTS'), SetWeakAttr( 'no_ref_name', 'True' ),
+  "<subject>_{implantation_session}_{ref_name}", SetType('Electrode Implantation PTS'), 
+  "<subject>_{implantation_session}_{ref_name}_Pos", SetType('Electrode Implantation Position TXT'), 
+  "<subject>_{implantation_session}_{ref_name}_Name", SetType('Electrode Implantation Name TXT'),
+  "<subject>_{implantation_session}_Pos", SetType('Electrode Implantation Position TXT'), SetWeakAttr( 'no_ref_name', 'True' ),
+  "<subject>_{implantation_session}_Name", SetType('Electrode Implantation Name TXT'), SetWeakAttr( 'no_ref_name', 'True' ),
+  "<subject>_sag", SetType('Electrode Implantation Sagittal Image'), SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>_coro", SetType('Electrode Implantation Coronal Image'), SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>", SetType('Electrode Implantation Powerpoint report'), SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>", SetType('Electrode Implantation PDF report'), SetWeakAttr( 'implantation_session', 'default', 'planning', 'True' ),
+  "<subject>_SI", SetType('Electrode Implantation PDF report'), SetWeakAttr( 'implantation_session', 'default', 'planning', 'False' ),
+  "<subject>_elec", SetType('Electrode List PDF'), SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>_sag_{implantation_session}", SetType('Electrode Implantation Sagittal Image'), # In case there is more than one
+  "<subject>_coro_{implantation_session}", SetType('Electrode Implantation Coronal Image'), # In case there is more than one
+  "<subject>_{implantation_session}", SetType('Electrode Implantation Powerpoint report'), # In case there is more than one
+  "<subject>_{implantation_session}", SetType('Electrode Implantation PDF report'), SetWeakAttr('planning', 'True' ), 
+  "<subject>_SI_{implantation_session}", SetType('Electrode Implantation PDF report'), SetWeakAttr( 'implantation_session', 'default', 'planning', 'False' ),
+  "<subject>_elec_{implantation_session}", SetType('Electrode List PDF'), SetWeakAttr( 'implantation_session', 'default' ),
+  
+  )
+)
+
+# Protocol-specific electrode models
+insertFirst( '{protocol}', 'electrode_models', SetType('Electrode Model Directory'), SetContent(
+  '{model_name}', SetType('Electrode Model')  
+  )
+)
+
diff --git a/epilepsy-toolbox/hierarchies/brainvisa-3.1.0/images.py b/epilepsy-toolbox/hierarchies/brainvisa-3.1.0/images.py
new file mode 100755
index 0000000..583f072
--- /dev/null
+++ b/epilepsy-toolbox/hierarchies/brainvisa-3.1.0/images.py
@@ -0,0 +1,211 @@
+# -*- coding: utf-8 -*-
+#  This software and supporting documentation are distributed by
+#      Institut des Neurosciences de Grenoble - INSERM U836
+#      France
+#
+# This software is governed by the CeCILL license version 2 under
+# French law and abiding by the rules of distribution of free software.
+# You can  use, modify and/or redistribute the software under the
+# terms of the CeCILL license version 2 as circulated by CEA, CNRS
+# and INRIA at the following URL "http://www.cecill.info".
+#
+# As a counterpart to the access to the source code and  rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty  and the software's author,  the holder of the
+# economic rights,  and the successive licensors  have only  limited
+# liability.
+#
+# In this respect, the user's attention is drawn to the risks associated
+# with loading,  using,  modifying and/or developing or reproducing the
+# software by the user in light of its specific status of free software,
+# that may mean  that it is complicated to manipulate,  and  that  also
+# therefore means  that it is reserved for developers  and  experienced
+# professionals having in-depth computer knowledge. Users are therefore
+# encouraged to load and test the software's suitability as regards their
+# requirements in conditions enabling the security of their systems and/or
+# data to be ensured and,  more generally, to use and operate it in the
+# same conditions as regards security.
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL license version 2 and that you accept its terms.
+
+include( 'base' )
+include( 'anatomy' )
+
+
+
+t2mri_content = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>", SetType( 'T2 MRI' ),
+       'registration', SetContent(
+        'T2-<subject>_<acquisition>', SetType( 'Referential of T2 MRI' ),
+        'T2-<subject>_<acquisition>_TO_Talairach-ACPC', SetType( 'Transform T2 MRI to Talairach-AC/PC-Anatomist' ),
+        'T2-<subject>_<acquisition>_TO_Talairach-MNI', SetType( 'Transform T2 MRI to Talairach-MNI template-SPM'),
+        'T2-<subject>_<acquisition>_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+        'T2-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform T2 MRI to another image' ),
+        'T2-<subject>_<acquisition>_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+flair_content = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>", SetType( 'FLAIR' ),
+       'registration', SetContent(
+        'FLAIR-<subject>_<acquisition>', SetType( 'Referential of FLAIR' ),
+        'FLAIR-<subject>_<acquisition>_TO_Talairach-ACPC', SetType( 'Transform FLAIR to Talairach-AC/PC-Anatomist' ),
+        'FLAIR-<subject>_<acquisition>_TO_Talairach-MNI', SetType( 'Transform FLAIR to Talairach-MNI template-SPM'),
+        'FLAIR-<subject>_<acquisition>_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+        'FLAIR-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform FLAIR to another image' ),
+        'FLAIR-<subject>_<acquisition>_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+
+ct_content = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>", SetType( 'CT' ),
+       'registration', SetContent(
+       'CT-<subject>_<acquisition>', SetType( 'Referential of CT' ),
+       'CT-<subject>_<acquisition>_TO_Talairach-ACPC', SetType( 'Transform CT to Talairach-AC/PC-Anatomist' ),
+       'CT-<subject>_<acquisition>_TO_Talairach-MNI', SetType( 'Transform CT to Talairach-MNI template-SPM'),
+       'CT-<subject>_<acquisition>_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+       'CT-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform CT to another image' ),
+       'CT-<subject>_<acquisition>_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+pet_content = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>", SetType( 'PET' ),
+       'registration', SetContent(
+       'PET-<subject>_<acquisition>', SetType( 'Referential of PET' ),
+       'PET-<subject>_<acquisition>_TO_Talairach-ACPC', SetType( 'Transform PET to Talairach-AC/PC-Anatomist' ),
+       'PET-<subject>_<acquisition>_TO_Talairach-MNI', SetType( 'Transform PET to Talairach-MNI template-SPM'),
+       'PET-<subject>_<acquisition>_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+       'PET-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform PET to another image' ),
+       'PET-<subject>_<acquisition>_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+fMRI_content  = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>_{subacquisition}", SetType( 'fMRI-epile' ),
+       'registration', SetContent(
+       'fMRI-<subject>_<acquisition>_{subacquisition}', SetType( 'Referential of fMRI-epile' ),
+       'fMRI-<subject>_<acquisition>_{subacquisition}_TO_Talairach-ACPC', SetType( 'Transform fMRI-epile to Talairach-AC/PC-Anatomist' ),
+       'fMRI-<subject>_<acquisition>_{subacquisition}_TO_Talairach-MNI', SetType( 'Transform fMRI-epile to Talairach-MNI template-SPM'),
+       'fMRI-<subject>_<acquisition>_{subacquisition}_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+       'fMRI-<subject>_<acquisition>_{subacquisition}_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform fMRI-epile to another image' ),
+       'fMRI-<subject>_<acquisition>_{subacquisition}_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+Statistics_content  = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>_{subacquisition}", SetType( 'Statistic-Data' ),
+       'registration', SetContent(
+       'Statistics-<subject>_<acquisition>_{subacquisition}', SetType( 'Referential of Statistic-Data' ),
+       'Statistics-<subject>_<acquisition>_{subacquisition}_TO_Talairach-ACPC', SetType( 'Transform Statistic-Data to Talairach-AC/PC-Anatomist' ),
+       'Statistics-<subject>_<acquisition>_{subacquisition}_TO_Talairach-MNI', SetType( 'Transform Statistic-Data to Talairach-MNI template-SPM'),
+       'Statistics-<subject>_<acquisition>_{subacquisition}_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+       'Statistics-<subject>_<acquisition>_{subacquisition}_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform Statistic-Data to another image' ),
+       'Statistics-<subject>_<acquisition>_{subacquisition}_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+resection_content = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>", SetType( 'Resection' ),
+       'registration', SetContent(
+       'Resection-<subject>_<acquisition>', SetType( 'Referential of Resection' ),
+       'Resection-<subject>_<acquisition>_TO_Talairach-ACPC', SetType( 'Transform Resection to Talairach-AC/PC-Anatomist' ),
+       'Resection-<subject>_<acquisition>_TO_Talairach-MNI', SetType( 'Transform Resection to Talairach-MNI template-SPM'),
+       'Resection-<subject>_<acquisition>_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+       'Resection-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform Resection to another image' ),
+       'Resection-<subject>_<acquisition>_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+# SEEG DATA
+#seeg_content = (
+#
+#  "<subject>_{experiment}_{expNumber} ", SetType( 'SEEG Experiment' ),
+#     SetContent(
+#       "<subject>_<experiment>_{subexperiment}__{expId}", SetType( 'Raw SEEG recording' ),
+#       "<subject>_<experiment>__{expId}", SetType( 'Raw SEEG recording' ),
+#       "<subject>_<experiment>_{subexperiment}", SetType( 'Raw SEEG recording' ),
+#       "<subject>_<experiment>", SetType( 'Raw SEEG recording' ),
+#       "<seegAcq>", SetType( 'Raw SEEG recording' ),
+#       "{seegProcessing}", SetType( 'SEEG processing directory' ),
+#     ),
+#  "<subject>_{experiment}", SetType( 'SEEG Experiment' ),
+#     SetContent(
+#       "<subject>_<experiment>_{subexperiment}__{expId}", SetType( 'Raw SEEG recording' ),
+#       "<subject>_<experiment>__{expId}", SetType( 'Raw SEEG recording' ),
+#       "<subject>_<experiment>_{subexperiment}", SetType( 'Raw SEEG recording' ),
+#       "<subject>_<experiment>", SetType( 'Raw SEEG recording' ),
+#       "<seegAcq>", SetType( 'Raw SEEG recording' ),
+#       "{seegProcessing}", SetType( 'SEEG processing directory' ),
+#     ),
+#)
+
+
+
+insert( '{protocol}/{subject}',
+  't2mri', SetWeakAttr( 'modality', 't2mri' ),
+    apply( SetContent, t2mri_content)
+)
+
+insert( '{protocol}/{subject}',
+  'flair', SetWeakAttr( 'modality', 'flair' ),
+    apply( SetContent, flair_content)
+)
+
+insert( '{protocol}/{subject}',
+  'ct', SetWeakAttr( 'modality', 'ct' ),
+    apply( SetContent, ct_content)
+)
+
+insert( '{protocol}/{subject}',
+  'pet', SetWeakAttr( 'modality', 'pet' ),
+    apply( SetContent, pet_content)
+)
+
+insert( '{protocol}/{subject}',
+  'fmri_epile', SetWeakAttr( 'modality', 'fmri_epile' ),
+    apply( SetContent, fMRI_content)
+)
+
+insert( '{protocol}/{subject}',
+  'Statistic-Data', SetWeakAttr( 'modality', 'Statistic-Data' ),
+    apply( SetContent, Statistics_content)
+)
+
+insert( '{center}/{subject}',
+  'Resection', SetWeakAttr( 'modality', 'resection' ),
+    apply( SetContent,resection_content)
+)
+
+insertFirst( '{protocol}/{subject}/t1mri/{acquisition}/registration', 'T1-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform Raw T1 MRI to another image' )
+)
+
+insert( '{protocol}/{subject}/t1mri/{acquisition}', 'y_<subject>_inverse', SetType( 'SPM normalization inverse deformation field' )
+)
+insert( '{protocol}/{subject}/t1mri/{acquisition}', 'y_<subject>', SetType( 'SPM normalization deformation field' )
+)
+
+insert( '{protocol}/{subject}/t1mri/{acquisition}','w<subject>',SetType('T1 SPM resampled in MNI'))
diff --git a/epilepsy-toolbox/hierarchies/brainvisa-3.1.0/images.py~ b/epilepsy-toolbox/hierarchies/brainvisa-3.1.0/images.py~
new file mode 100755
index 0000000..c7912f8
--- /dev/null
+++ b/epilepsy-toolbox/hierarchies/brainvisa-3.1.0/images.py~
@@ -0,0 +1,211 @@
+# -*- coding: utf-8 -*-
+#  This software and supporting documentation are distributed by
+#      Institut des Neurosciences de Grenoble - INSERM U836
+#      France
+#
+# This software is governed by the CeCILL license version 2 under
+# French law and abiding by the rules of distribution of free software.
+# You can  use, modify and/or redistribute the software under the
+# terms of the CeCILL license version 2 as circulated by CEA, CNRS
+# and INRIA at the following URL "http://www.cecill.info".
+#
+# As a counterpart to the access to the source code and  rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty  and the software's author,  the holder of the
+# economic rights,  and the successive licensors  have only  limited
+# liability.
+#
+# In this respect, the user's attention is drawn to the risks associated
+# with loading,  using,  modifying and/or developing or reproducing the
+# software by the user in light of its specific status of free software,
+# that may mean  that it is complicated to manipulate,  and  that  also
+# therefore means  that it is reserved for developers  and  experienced
+# professionals having in-depth computer knowledge. Users are therefore
+# encouraged to load and test the software's suitability as regards their
+# requirements in conditions enabling the security of their systems and/or
+# data to be ensured and,  more generally, to use and operate it in the
+# same conditions as regards security.
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL license version 2 and that you accept its terms.
+
+include( 'base' )
+include( 'anatomy' )
+
+
+
+t2mri_content = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>", SetType( 'T2 MRI' ),
+       'registration', SetContent(
+        'T2-<subject>_<acquisition>', SetType( 'Referential of T2 MRI' ),
+        'T2-<subject>_<acquisition>_TO_Talairach-ACPC', SetType( 'Transform T2 MRI to Talairach-AC/PC-Anatomist' ),
+        'T2-<subject>_<acquisition>_TO_Talairach-MNI', SetType( 'Transform T2 MRI to Talairach-MNI template-SPM'),
+        'T2-<subject>_<acquisition>_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+        'T2-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform T2 MRI to another image' ),
+        'T2-<subject>_<acquisition>_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+flair_content = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>", SetType( 'FLAIR' ),
+       'registration', SetContent(
+        'FLAIR-<subject>_<acquisition>', SetType( 'Referential of FLAIR' ),
+        'FLAIR-<subject>_<acquisition>_TO_Talairach-ACPC', SetType( 'Transform FLAIR to Talairach-AC/PC-Anatomist' ),
+        'FLAIR-<subject>_<acquisition>_TO_Talairach-MNI', SetType( 'Transform FLAIR to Talairach-MNI template-SPM'),
+        'FLAIR-<subject>_<acquisition>_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+        'FLAIR-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform FLAIR to another image' ),
+        'FLAIR-<subject>_<acquisition>_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+
+ct_content = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>", SetType( 'CT' ),
+       'registration', SetContent(
+       'CT-<subject>_<acquisition>', SetType( 'Referential of CT' ),
+       'CT-<subject>_<acquisition>_TO_Talairach-ACPC', SetType( 'Transform CT to Talairach-AC/PC-Anatomist' ),
+       'CT-<subject>_<acquisition>_TO_Talairach-MNI', SetType( 'Transform CT to Talairach-MNI template-SPM'),
+       'CT-<subject>_<acquisition>_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+       'CT-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform CT to another image' ),
+       'CT-<subject>_<acquisition>_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+pet_content = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>", SetType( 'PET' ),
+       'registration', SetContent(
+       'PET-<subject>_<acquisition>', SetType( 'Referential of PET' ),
+       'PET-<subject>_<acquisition>_TO_Talairach-ACPC', SetType( 'Transform PET to Talairach-AC/PC-Anatomist' ),
+       'PET-<subject>_<acquisition>_TO_Talairach-MNI', SetType( 'Transform PET to Talairach-MNI template-SPM'),
+       'PET-<subject>_<acquisition>_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+       'PET-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform PET to another image' ),
+       'PET-<subject>_<acquisition>_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+fMRI_content  = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>_{subacquisition}", SetType( 'fMRI-epile' ),
+       'registration', SetContent(
+       'fMRI-<subject>_<acquisition>_{subacquisition}', SetType( 'Referential of fMRI-epile' ),
+       'fMRI-<subject>_<acquisition>_{subacquisition}_TO_Talairach-ACPC', SetType( 'Transform fMRI-epile to Talairach-AC/PC-Anatomist' ),
+       'fMRI-<subject>_<acquisition>_{subacquisition}_TO_Talairach-MNI', SetType( 'Transform fMRI-epile to Talairach-MNI template-SPM'),
+       'fMRI-<subject>_<acquisition>_{subacquisition}_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+       'fMRI-<subject>_<acquisition>_{subacquisition}_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform fMRI-epile to another image' ),
+       'fMRI-<subject>_<acquisition>_{subacquisition}_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+Statistics_content  = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>_{subacquisition}", SetType( 'Statistic-Data' ),
+       'registration', SetContent(
+       'Statistics-<subject>_<acquisition>_{subacquisition}', SetType( 'Referential of Statistic-Data' ),
+       'Statistics-<subject>_<acquisition>_{subacquisition}_TO_Talairach-ACPC', SetType( 'Transform Statistic-Data to Talairach-AC/PC-Anatomist' ),
+       'Statistics-<subject>_<acquisition>_{subacquisition}_TO_Talairach-MNI', SetType( 'Transform Statistic-Data to Talairach-MNI template-SPM'),
+       'Statistics-<subject>_<acquisition>_{subacquisition}_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+       'Statistics-<subject>_<acquisition>_{subacquisition}_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform Statistic-Data to another image' ),
+       'Statistics-<subject>_<acquisition>_{subacquisition}_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+resection_content = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>", SetType( 'Resection' ),
+       'registration', SetContent(
+       'Resection-<subject>_<acquisition>', SetType( 'Referential of PET' ),
+       'Resection-<subject>_<acquisition>_TO_Talairach-ACPC', SetType( 'Transform PET to Talairach-AC/PC-Anatomist' ),
+       'Resection-<subject>_<acquisition>_TO_Talairach-MNI', SetType( 'Transform PET to Talairach-MNI template-SPM'),
+       'Resection-<subject>_<acquisition>_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+       'Resection-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform PET to another image' ),
+       'Resection-<subject>_<acquisition>_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+# SEEG DATA
+#seeg_content = (
+#
+#  "<subject>_{experiment}_{expNumber} ", SetType( 'SEEG Experiment' ),
+#     SetContent(
+#       "<subject>_<experiment>_{subexperiment}__{expId}", SetType( 'Raw SEEG recording' ),
+#       "<subject>_<experiment>__{expId}", SetType( 'Raw SEEG recording' ),
+#       "<subject>_<experiment>_{subexperiment}", SetType( 'Raw SEEG recording' ),
+#       "<subject>_<experiment>", SetType( 'Raw SEEG recording' ),
+#       "<seegAcq>", SetType( 'Raw SEEG recording' ),
+#       "{seegProcessing}", SetType( 'SEEG processing directory' ),
+#     ),
+#  "<subject>_{experiment}", SetType( 'SEEG Experiment' ),
+#     SetContent(
+#       "<subject>_<experiment>_{subexperiment}__{expId}", SetType( 'Raw SEEG recording' ),
+#       "<subject>_<experiment>__{expId}", SetType( 'Raw SEEG recording' ),
+#       "<subject>_<experiment>_{subexperiment}", SetType( 'Raw SEEG recording' ),
+#       "<subject>_<experiment>", SetType( 'Raw SEEG recording' ),
+#       "<seegAcq>", SetType( 'Raw SEEG recording' ),
+#       "{seegProcessing}", SetType( 'SEEG processing directory' ),
+#     ),
+#)
+
+
+
+insert( '{protocol}/{subject}',
+  't2mri', SetWeakAttr( 'modality', 't2mri' ),
+    apply( SetContent, t2mri_content)
+)
+
+insert( '{protocol}/{subject}',
+  'flair', SetWeakAttr( 'modality', 'flair' ),
+    apply( SetContent, flair_content)
+)
+
+insert( '{protocol}/{subject}',
+  'ct', SetWeakAttr( 'modality', 'ct' ),
+    apply( SetContent, ct_content)
+)
+
+insert( '{protocol}/{subject}',
+  'pet', SetWeakAttr( 'modality', 'pet' ),
+    apply( SetContent, pet_content)
+)
+
+insert( '{protocol}/{subject}',
+  'fmri_epile', SetWeakAttr( 'modality', 'fmri_epile' ),
+    apply( SetContent, fMRI_content)
+)
+
+insert( '{protocol}/{subject}',
+  'Statistic-Data', SetWeakAttr( 'modality', 'Statistic-Data' ),
+    apply( SetContent, Statistics_content)
+)
+
+insert( '{center}/{subject}',
+  'Resection', SetWeakAttr( 'modality', 'resection' ),
+    apply( SetContent,resection_content)
+)
+
+insertFirst( '{protocol}/{subject}/t1mri/{acquisition}/registration', 'T1-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform Raw T1 MRI to another image' )
+)
+
+insert( '{protocol}/{subject}/t1mri/{acquisition}', 'y_<subject>_inverse', SetType( 'SPM normalization inverse deformation field' )
+)
+insert( '{protocol}/{subject}/t1mri/{acquisition}', 'y_<subject>', SetType( 'SPM normalization deformation field' )
+)
+
+insert( '{protocol}/{subject}/t1mri/{acquisition}','w<subject>',SetType('T1 SPM resampled in MNI'))
diff --git a/epilepsy-toolbox/hierarchies/brainvisa-3.1.0/seeg.py b/epilepsy-toolbox/hierarchies/brainvisa-3.1.0/seeg.py
new file mode 100755
index 0000000..93377fa
--- /dev/null
+++ b/epilepsy-toolbox/hierarchies/brainvisa-3.1.0/seeg.py
@@ -0,0 +1,139 @@
+# -*- coding: utf-8 -*-
+#  This software and supporting documentation are distributed by
+#      Institut des Neurosciences de Grenoble - INSERM U836
+#      France
+#
+# This software is governed by the CeCILL license version 2 under
+# French law and abiding by the rules of distribution of free software.
+# You can  use, modify and/or redistribute the software under the 
+# terms of the CeCILL license version 2 as circulated by CEA, CNRS
+# and INRIA at the following URL "http://www.cecill.info". 
+#
+# As a counterpart to the access to the source code and  rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty  and the software's author,  the holder of the
+# economic rights,  and the successive licensors  have only  limited
+# liability.
+#
+# In this respect, the user's attention is drawn to the risks associated
+# with loading,  using,  modifying and/or developing or reproducing the
+# software by the user in light of its specific status of free software,
+# that may mean  that it is complicated to manipulate,  and  that  also
+# therefore means  that it is reserved for developers  and  experienced
+# professionals having in-depth computer knowledge. Users are therefore
+# encouraged to load and test the software's suitability as regards their
+# requirements in conditions enabling the security of their systems and/or 
+# data to be ensured and,  more generally, to use and operate it in the 
+# same conditions as regards security.
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL license version 2 and that you accept its terms.
+
+include( 'base' )
+include( 'anatomy' )
+
+
+# SEEG DATA
+seeg_content = (
+
+  "<subject>_{experiment}_{expNumber} ", SetType( 'SEEG Experiment' ),
+     SetContent(
+       "<subject>_<experiment>_{subexperiment}__{expId}", SetType( 'Raw SEEG recording' ), 
+       "<subject>_<experiment>__{expId}", SetType( 'Raw SEEG recording' ), 
+       "<subject>_<experiment>_{subexperiment}", SetType( 'Raw SEEG recording' ), 
+       "<subject>_<experiment>", SetType( 'Raw SEEG recording' ), 
+       "<seegAcq>", SetType( 'Raw SEEG recording' ),
+       "{seegProcessing}", SetType( 'SEEG processing directory' ),
+     ),
+  "<subject>_{experiment}", SetType( 'SEEG Experiment' ),
+     SetContent(
+       "<subject>_<experiment>_{subexperiment}__{expId}", SetType( 'Raw SEEG recording' ), 
+       "<subject>_<experiment>__{expId}", SetType( 'Raw SEEG recording' ), 
+       "<subject>_<experiment>_{subexperiment}", SetType( 'Raw SEEG recording' ), 
+       "<subject>_<experiment>", SetType( 'Raw SEEG recording' ), 
+       "<seegAcq>", SetType( 'Raw SEEG recording' ),
+       "{seegProcessing}", SetType( 'SEEG processing directory' ),
+       #"{seegAcq}", SetType( 'Elan EEG' ), 
+       #"{seegAcq}", SetType( 'Trigger'),
+       #"{localizer}", SetType ('JP Localizer'),
+       #"*_trials", SetType ('SEEG Trials Directory' ),
+         #SetContent(
+           #"*", SetType ('JP image'),
+   #),
+       #"*", SetType ('BrainTV Film'),
+       #"*", SetType ('JP image'),
+     ),
+
+  #"indexepi_{date}_{location}_{experiment}_{expNumber}", SetDefaultAttributeValue( 'expNumber', 1 ), SetNonMandatoryKeyAttribute( 'expNumber' ),
+     #SetType( 'Epilepsy Index SEEG Experiment' ), SetWeakAttr( 'experimentType', 'epilepsy index' ),
+     #SetContent(
+       #"EEG_{seegAcq}", SetType( 'Raw SEEG recording' ),
+       #"EEG_{seegAcq}", SetType( 'ImaGIN matlab files' ),
+       #"baselineEEG_{seegAcq}", SetType( 'ImaGIN matlab files' ),
+       #"EI_EEG_{seegAcq}__{freqMin}_{freqMax}_{window}_{onset}", SetType( 'ImaGIN matlab files' ),
+       #"EI_Group__{freqMin}_{freqMax}_{window}_{onset}", SetType( 'ImaGIN matlab files' ),
+       #"SPM_EI_EEG_{seegAcq}__{freqMin}_{freqMax}_{window}_{onset}", SetType( 'EpiIndex Directory' ),
+         #SetContent(
+           #"*", SetType( '4D Volume' ),
+           #"*", SetType( 'ImaGIN matlab files' ),
+	 #),
+       #"Results", SetType( 'Results Directory' ), SetContent( "*", SetType( 'PDF Report' ), )
+     #),
+
+  #"stim_{date}_{location}_{experiment}_{expNumber}", SetDefaultAttributeValue( 'expNumber', 1 ), SetNonMandatoryKeyAttribute( 'expNumber' ),
+     #SetType( 'Stimulation SEEG Experiment' ), SetWeakAttr( 'experimentType', 'stimulation' ),
+     #SetContent(
+       #"EEG_{seegAcq}", SetType( 'Raw SEEG recording' ),
+       #"EEG_{seegAcq}", SetType( 'ImaGIN matlab files' ),
+     #),
+)
+
+# Microelectrode recordings data
+mer_content = (
+  "<subject>_{experiment}_{expNumber}", SetType('MER Experiment'), SetContent(
+       "<subject>_<experiment>_{subexperiment}__{expId}", SetType('Raw MER recording'),
+       "<subject>_<experiment>__{expId}", SetType('Raw MER recording'),
+       "<subject>_<experiment>_{subexperiment}", SetType('Raw MER recording'),
+       "<subject>_<experiment>", SetType('Raw MER recording'),
+  ),
+  "<subject>_{experiment}", SetType('MER Experiment'), SetContent(
+       "<subject>_<experiment>_{subexperiment}__{expId}", SetType('Raw MER recording'),
+       "<subject>_<experiment>__{expId}", SetType('Raw MER recording'),
+       "<subject>_<experiment>_{subexperiment}", SetType('Raw MER recording'),
+       "<subject>_<experiment>", SetType('Raw MER recording'),
+  ),
+)
+
+# Eye movements
+eye_content = (
+  "<subject>_{experiment}_{expNumber}", SetType('Eye Tracking Experiment'), SetContent(
+     "<subject>_<experiment>_{subexperiment}__{expId}", SetType('Raw Eye Tracking'),
+     "<subject>_<experiment>__{expId}", SetType('Raw Eye Tracking'),
+     "<subject>_<experiment>_{subexperiment}", SetType('Raw Eye Tracking'),
+     "<subject>_<experiment>", SetType('Raw Eye Tracking'),
+  ),
+  "<subject>_{experiment}", SetType('Eye Tracking Experiment'), SetContent(
+     "<subject>_<experiment>_{subexperiment}__{expId}", SetType('Raw Eye Tracking'),
+     "<subject>_<experiment>__{expId}", SetType('Raw Eye Tracking'),
+     "<subject>_<experiment>_{subexperiment}", SetType('Raw Eye Tracking'),
+     "<subject>_<experiment>", SetType('Raw Eye Tracking'),
+  ),
+)
+
+# Including in the main database hierarchy
+insert( '{protocol}/{subject}',
+  'seeg', SetWeakAttr( 'modality', 'seeg' ),
+    apply( SetContent, seeg_content)
+)
+
+insert( '{protocol}/{subject}',
+  'mer', SetWeakAttr( 'modality', 'mer' ),
+    apply( SetContent, mer_content)
+)
+
+insert( '{protocol}/{subject}',
+  'eye', SetWeakAttr( 'modality', 'eye' ),
+    apply( SetContent, eye_content)
+)
+
+
diff --git a/epilepsy-toolbox/hierarchies/brainvisa-3.2.0/electrodes.py b/epilepsy-toolbox/hierarchies/brainvisa-3.2.0/electrodes.py
new file mode 100755
index 0000000..a204a14
--- /dev/null
+++ b/epilepsy-toolbox/hierarchies/brainvisa-3.2.0/electrodes.py
@@ -0,0 +1,73 @@
+# -*- coding: utf-8 -*-
+#  This software and supporting documentation are distributed by
+#      Institut des Neurosciences de Grenoble - INSERM U836
+#      France
+#
+# This software is governed by the CeCILL license version 2 under
+# French law and abiding by the rules of distribution of free software.
+# You can  use, modify and/or redistribute the software under the 
+# terms of the CeCILL license version 2 as circulated by CEA, CNRS
+# and INRIA at the following URL "http://www.cecill.info". 
+#
+# As a counterpart to the access to the source code and  rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty  and the software's author,  the holder of the
+# economic rights,  and the successive licensors  have only  limited
+# liability.
+#
+# In this respect, the user's attention is drawn to the risks associated
+# with loading,  using,  modifying and/or developing or reproducing the
+# software by the user in light of its specific status of free software,
+# that may mean  that it is complicated to manipulate,  and  that  also
+# therefore means  that it is reserved for developers  and  experienced
+# professionals having in-depth computer knowledge. Users are therefore
+# encouraged to load and test the software's suitability as regards their
+# requirements in conditions enabling the security of their systems and/or 
+# data to be ensured and,  more generally, to use and operate it in the 
+# same conditions as regards security.
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL license version 2 and that you accept its terms.
+
+include( 'base' )
+include( 'anatomy' )
+
+insert( '{center}/{subject}','implantation', SetType('Electrode Implantation Directory'), SetContent(
+  "<subject>_{implantation_session}", SetType('Electrode Implantation'), # In case there is more than one
+  "<subject>", SetType('Electrode Implantation'),  SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>_{implantation_session}", SetType('Electrodes Labels'), # In case there is more than one
+  "<subject>", SetType('Electrodes Labels'),  SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>", SetType('Electrode Implantation PTS'), SetWeakAttr( 'no_ref_name', 'True', 'implantation_session', 'default' ),
+  "<subject>_{ref_name}", SetType('Electrode Implantation PTS'),  SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>_{ref_name}_Pos", SetType('Electrode Implantation Position TXT'),  SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>_{ref_name}_Name", SetType('Electrode Implantation Name TXT'), SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>_Pos", SetType('Electrode Implantation Position TXT'), SetWeakAttr( 'no_ref_name', 'True', 'implantation_session', 'default' ),
+  "<subject>_Name", SetType('Electrode Implantation Name TXT'), SetWeakAttr( 'no_ref_name', 'True', 'implantation_session', 'default' ),
+  "<subject>_{implantation_session}", SetType('Electrode Implantation PTS'), SetWeakAttr( 'no_ref_name', 'True' ),
+  "<subject>_{implantation_session}_{ref_name}", SetType('Electrode Implantation PTS'), 
+  "<subject>_{implantation_session}_{ref_name}_Pos", SetType('Electrode Implantation Position TXT'), 
+  "<subject>_{implantation_session}_{ref_name}_Name", SetType('Electrode Implantation Name TXT'),
+  "<subject>_{implantation_session}_Pos", SetType('Electrode Implantation Position TXT'), SetWeakAttr( 'no_ref_name', 'True' ),
+  "<subject>_{implantation_session}_Name", SetType('Electrode Implantation Name TXT'), SetWeakAttr( 'no_ref_name', 'True' ),
+  "<subject>_sag", SetType('Electrode Implantation Sagittal Image'), SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>_coro", SetType('Electrode Implantation Coronal Image'), SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>", SetType('Electrode Implantation Powerpoint report'), SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>", SetType('Electrode Implantation PDF report'), SetWeakAttr( 'implantation_session', 'default', 'planning', 'True' ),
+  "<subject>_SI", SetType('Electrode Implantation PDF report'), SetWeakAttr( 'implantation_session', 'default', 'planning', 'False' ),
+  "<subject>_elec", SetType('Electrode List PDF'), SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>_sag_{implantation_session}", SetType('Electrode Implantation Sagittal Image'), # In case there is more than one
+  "<subject>_coro_{implantation_session}", SetType('Electrode Implantation Coronal Image'), # In case there is more than one
+  "<subject>_{implantation_session}", SetType('Electrode Implantation Powerpoint report'), # In case there is more than one
+  "<subject>_{implantation_session}", SetType('Electrode Implantation PDF report'), SetWeakAttr('planning', 'True' ), 
+  "<subject>_SI_{implantation_session}", SetType('Electrode Implantation PDF report'), SetWeakAttr( 'implantation_session', 'default', 'planning', 'False' ),
+  "<subject>_elec_{implantation_session}", SetType('Electrode List PDF'), SetWeakAttr( 'implantation_session', 'default' ),
+  
+  )
+)
+
+# Protocol-specific electrode models
+insertFirst( '{center}', 'electrode_models', SetType('Electrode Model Directory'), SetContent(
+  '{model_name}', SetType('Electrode Model')  
+  )
+)
+
diff --git a/epilepsy-toolbox/hierarchies/brainvisa-3.2.0/electrodes.py~ b/epilepsy-toolbox/hierarchies/brainvisa-3.2.0/electrodes.py~
new file mode 100755
index 0000000..335947b
--- /dev/null
+++ b/epilepsy-toolbox/hierarchies/brainvisa-3.2.0/electrodes.py~
@@ -0,0 +1,71 @@
+# -*- coding: utf-8 -*-
+#  This software and supporting documentation are distributed by
+#      Institut des Neurosciences de Grenoble - INSERM U836
+#      France
+#
+# This software is governed by the CeCILL license version 2 under
+# French law and abiding by the rules of distribution of free software.
+# You can  use, modify and/or redistribute the software under the 
+# terms of the CeCILL license version 2 as circulated by CEA, CNRS
+# and INRIA at the following URL "http://www.cecill.info". 
+#
+# As a counterpart to the access to the source code and  rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty  and the software's author,  the holder of the
+# economic rights,  and the successive licensors  have only  limited
+# liability.
+#
+# In this respect, the user's attention is drawn to the risks associated
+# with loading,  using,  modifying and/or developing or reproducing the
+# software by the user in light of its specific status of free software,
+# that may mean  that it is complicated to manipulate,  and  that  also
+# therefore means  that it is reserved for developers  and  experienced
+# professionals having in-depth computer knowledge. Users are therefore
+# encouraged to load and test the software's suitability as regards their
+# requirements in conditions enabling the security of their systems and/or 
+# data to be ensured and,  more generally, to use and operate it in the 
+# same conditions as regards security.
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL license version 2 and that you accept its terms.
+
+include( 'base' )
+include( 'anatomy' )
+
+insert( '{center}/{subject}','implantation', SetType('Electrode Implantation Directory'), SetContent(
+  "<subject>_{implantation_session}", SetType('Electrode Implantation'), # In case there is more than one
+  "<subject>", SetType('Electrode Implantation'),  SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>", SetType('Electrode Implantation PTS'), SetWeakAttr( 'no_ref_name', 'True', 'implantation_session', 'default' ),
+  "<subject>_{ref_name}", SetType('Electrode Implantation PTS'),  SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>_{ref_name}_Pos", SetType('Electrode Implantation Position TXT'),  SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>_{ref_name}_Name", SetType('Electrode Implantation Name TXT'), SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>_Pos", SetType('Electrode Implantation Position TXT'), SetWeakAttr( 'no_ref_name', 'True', 'implantation_session', 'default' ),
+  "<subject>_Name", SetType('Electrode Implantation Name TXT'), SetWeakAttr( 'no_ref_name', 'True', 'implantation_session', 'default' ),
+  "<subject>_{implantation_session}", SetType('Electrode Implantation PTS'), SetWeakAttr( 'no_ref_name', 'True' ),
+  "<subject>_{implantation_session}_{ref_name}", SetType('Electrode Implantation PTS'), 
+  "<subject>_{implantation_session}_{ref_name}_Pos", SetType('Electrode Implantation Position TXT'), 
+  "<subject>_{implantation_session}_{ref_name}_Name", SetType('Electrode Implantation Name TXT'),
+  "<subject>_{implantation_session}_Pos", SetType('Electrode Implantation Position TXT'), SetWeakAttr( 'no_ref_name', 'True' ),
+  "<subject>_{implantation_session}_Name", SetType('Electrode Implantation Name TXT'), SetWeakAttr( 'no_ref_name', 'True' ),
+  "<subject>_sag", SetType('Electrode Implantation Sagittal Image'), SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>_coro", SetType('Electrode Implantation Coronal Image'), SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>", SetType('Electrode Implantation Powerpoint report'), SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>", SetType('Electrode Implantation PDF report'), SetWeakAttr( 'implantation_session', 'default', 'planning', 'True' ),
+  "<subject>_SI", SetType('Electrode Implantation PDF report'), SetWeakAttr( 'implantation_session', 'default', 'planning', 'False' ),
+  "<subject>_elec", SetType('Electrode List PDF'), SetWeakAttr( 'implantation_session', 'default' ),
+  "<subject>_sag_{implantation_session}", SetType('Electrode Implantation Sagittal Image'), # In case there is more than one
+  "<subject>_coro_{implantation_session}", SetType('Electrode Implantation Coronal Image'), # In case there is more than one
+  "<subject>_{implantation_session}", SetType('Electrode Implantation Powerpoint report'), # In case there is more than one
+  "<subject>_{implantation_session}", SetType('Electrode Implantation PDF report'), SetWeakAttr('planning', 'True' ), 
+  "<subject>_SI_{implantation_session}", SetType('Electrode Implantation PDF report'), SetWeakAttr( 'implantation_session', 'default', 'planning', 'False' ),
+  "<subject>_elec_{implantation_session}", SetType('Electrode List PDF'), SetWeakAttr( 'implantation_session', 'default' ),
+  
+  )
+)
+
+# Protocol-specific electrode models
+insertFirst( '{center}', 'electrode_models', SetType('Electrode Model Directory'), SetContent(
+  '{model_name}', SetType('Electrode Model')  
+  )
+)
+
diff --git a/epilepsy-toolbox/hierarchies/brainvisa-3.2.0/images.py b/epilepsy-toolbox/hierarchies/brainvisa-3.2.0/images.py
new file mode 100755
index 0000000..b3c4836
--- /dev/null
+++ b/epilepsy-toolbox/hierarchies/brainvisa-3.2.0/images.py
@@ -0,0 +1,329 @@
+# -*- coding: utf-8 -*-
+#  This software and supporting documentation are distributed by
+#      Institut des Neurosciences de Grenoble - INSERM U836
+#      France
+#
+# This software is governed by the CeCILL license version 2 under
+# French law and abiding by the rules of distribution of free software.
+# You can  use, modify and/or redistribute the software under the
+# terms of the CeCILL license version 2 as circulated by CEA, CNRS
+# and INRIA at the following URL "http://www.cecill.info".
+#
+# As a counterpart to the access to the source code and  rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty  and the software's author,  the holder of the
+# economic rights,  and the successive licensors  have only  limited
+# liability.
+#
+# In this respect, the user's attention is drawn to the risks associated
+# with loading,  using,  modifying and/or developing or reproducing the
+# software by the user in light of its specific status of free software,
+# that may mean  that it is complicated to manipulate,  and  that  also
+# therefore means  that it is reserved for developers  and  experienced
+# professionals having in-depth computer knowledge. Users are therefore
+# encouraged to load and test the software's suitability as regards their
+# requirements in conditions enabling the security of their systems and/or
+# data to be ensured and,  more generally, to use and operate it in the
+# same conditions as regards security.
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL license version 2 and that you accept its terms.
+
+include( 'base' )
+include( 'anatomy' )
+
+
+
+t2mri_content = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>", SetType( 'T2 MRI' ),
+       'registration', SetContent(
+        'T2-<subject>_<acquisition>', SetType( 'Referential of T2 MRI' ),
+        'T2-<subject>_<acquisition>_TO_Talairach-ACPC', SetType( 'Transform T2 MRI to Talairach-AC/PC-Anatomist' ),
+        'T2-<subject>_<acquisition>_TO_Talairach-MNI', SetType( 'Transform T2 MRI to Talairach-MNI template-SPM'),
+        'T2-<subject>_<acquisition>_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+        'T2-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform T2 MRI to another image' ),
+        'T2-<subject>_<acquisition>_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+flair_content = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>", SetType( 'FLAIR' ),
+       'registration', SetContent(
+        'FLAIR-<subject>_<acquisition>', SetType( 'Referential of FLAIR' ),
+        'FLAIR-<subject>_<acquisition>_TO_Talairach-ACPC', SetType( 'Transform FLAIR to Talairach-AC/PC-Anatomist' ),
+        'FLAIR-<subject>_<acquisition>_TO_Talairach-MNI', SetType( 'Transform FLAIR to Talairach-MNI template-SPM'),
+        'FLAIR-<subject>_<acquisition>_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+        'FLAIR-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform FLAIR to another image' ),
+        'FLAIR-<subject>_<acquisition>_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+fgatir_content = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>", SetType( 'FGATIR' ),
+       'registration', SetContent(
+        'FGATIR-<subject>_<acquisition>', SetType( 'Referential of FGATIR' ),
+        'FGATIR-<subject>_<acquisition>_TO_Talairach-ACPC', SetType( 'Transform FGATIR to Talairach-AC/PC-Anatomist' ),
+        'FGATIR-<subject>_<acquisition>_TO_Talairach-MNI', SetType( 'Transform FGATIR to Talairach-MNI template-SPM'),
+        'FGATIR-<subject>_<acquisition>_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+        'FGATIR-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform FGATIR to another image' ),
+        'FGATIR-<subject>_<acquisition>_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+
+ct_content = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>", SetType( 'CT' ),
+       'registration', SetContent(
+       'CT-<subject>_<acquisition>', SetType( 'Referential of CT' ),
+       'CT-<subject>_<acquisition>_TO_Talairach-ACPC', SetType( 'Transform CT to Talairach-AC/PC-Anatomist' ),
+       'CT-<subject>_<acquisition>_TO_Talairach-MNI', SetType( 'Transform CT to Talairach-MNI template-SPM'),
+       'CT-<subject>_<acquisition>_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+       'CT-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform CT to another image' ),
+       'CT-<subject>_<acquisition>_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+pet_content = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>", SetType( 'PET' ),
+       'registration', SetContent(
+       'PET-<subject>_<acquisition>', SetType( 'Referential of PET' ),
+       'PET-<subject>_<acquisition>_TO_Talairach-ACPC', SetType( 'Transform PET to Talairach-AC/PC-Anatomist' ),
+       'PET-<subject>_<acquisition>_TO_Talairach-MNI', SetType( 'Transform PET to Talairach-MNI template-SPM'),
+       'PET-<subject>_<acquisition>_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+       'PET-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform PET to another image' ),
+       'PET-<subject>_<acquisition>_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+fMRI_content  = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>_{subacquisition}", SetType( 'fMRI-epile' ),
+       'registration', SetContent(
+       'fMRI-<subject>_<acquisition>_{subacquisition}', SetType( 'Referential of fMRI-epile' ),
+       'fMRI-<subject>_<acquisition>_{subacquisition}_TO_Talairach-ACPC', SetType( 'Transform fMRI-epile to Talairach-AC/PC-Anatomist' ),
+       'fMRI-<subject>_<acquisition>_{subacquisition}_TO_Talairach-MNI', SetType( 'Transform fMRI-epile to Talairach-MNI template-SPM'),
+       'fMRI-<subject>_<acquisition>_{subacquisition}_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+       'fMRI-<subject>_<acquisition>_{subacquisition}_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform fMRI-epile to another image' ),
+       'fMRI-<subject>_<acquisition>_{subacquisition}_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+dtivolume_content = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>", SetType( 'DTIVolume' ),
+       'registration', SetContent(
+        'DTIVolume-<subject>_<acquisition>', SetType( 'Referential of DTIVolume' ),
+        'DTIVolume-<subject>_<acquisition>_TO_Talairach-ACPC', SetType( 'Transform DTIVolume to Talairach-AC/PC-Anatomist' ),
+        'DTIVolume-<subject>_<acquisition>_TO_Talairach-MNI', SetType( 'Transform DTIVolume to Talairach-MNI template-SPM'),
+        'DTIVolume-<subject>_<acquisition>_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+        'DTIVolume-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform DTIVolume to another image' ),
+        'DTIVolume-<subject>_<acquisition>_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+Statistics_content  = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>_{subacquisition}", SetType( 'Statistic-Data' ),
+       'registration', SetContent(
+       'Statistics-<subject>_<acquisition>_{subacquisition}', SetType( 'Referential of Statistic-Data' ),
+       'Statistics-<subject>_<acquisition>_{subacquisition}_TO_Talairach-ACPC', SetType( 'Transform Statistic-Data to Talairach-AC/PC-Anatomist' ),
+       'Statistics-<subject>_<acquisition>_{subacquisition}_TO_Talairach-MNI', SetType( 'Transform Statistic-Data to Talairach-MNI template-SPM'),
+       'Statistics-<subject>_<acquisition>_{subacquisition}_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+       'Statistics-<subject>_<acquisition>_{subacquisition}_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform Statistic-Data to another image' ),
+       'Statistics-<subject>_<acquisition>_{subacquisition}_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+FreeSurferAtlas_content  = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>", SetType( 'FreesurferAtlas' ),
+       'registration', SetContent(
+       'FreeSurferAtlas-<subject>_<acquisition>', SetType( 'Referential of FreesurferAtlas' ),
+       'FreeSurferAtlas-<subject>_<acquisition>_TO_Talairach-ACPC', SetType( 'Transform FreesurferAtlas to Talairach-AC/PC-Anatomist' ),
+       'FreeSurferAtlas-<subject>_<acquisition>_TO_Talairach-MNI', SetType( 'Transform FreesurferAtlas to Talairach-MNI template-SPM'),
+       'FreeSurferAtlas-<subject>_<acquisition>_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+       'FreeSurferAtlas-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform FreesurferAtlas to another image' ),
+       'FreeSurferAtlas-<subject>_<acquisition>_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+HippoFreesurferAtlas_content  = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>", SetType( 'HippoFreesurferAtlas' ),
+       'registration', SetContent(
+       'HippoFreesurferAtlas-<subject>_<acquisition>', SetType( 'Referential of HippoFreesurferAtlas' ),
+       'HippoFreesurferAtlas-<subject>_<acquisition>_TO_Talairach-ACPC', SetType( 'Transform HippoFreesurferAtlas to Talairach-AC/PC-Anatomist' ),
+       'HippoFreesurferAtlas-<subject>_<acquisition>_TO_Talairach-MNI', SetType( 'Transform HippoFreesurferAtlas to Talairach-MNI template-SPM'),
+       'HippoFreesurferAtlas-<subject>_<acquisition>_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+       'HippoFreesurferAtlas-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform HippoFreesurferAtlas to another image' ),
+       'HippoFreesurferAtlas-<subject>_<acquisition>_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+resection_content = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>", SetType( 'Resection' ),
+       "ROI-<subject>-<acquisition>", SetType( 'ROI IntrAnat' ),
+       "Info-<subject>-<acquisition>", SetType('Resection Description'),
+       ),
+)
+
+#roi_intranat_content = (
+#  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+#     SetContent(
+#
+#       'registration', SetContent(
+#       'ROI IntrAnat-<subject>_<acquisition>', SetType( 'Referential of ROI IntrAnat' ),
+#       'ROI IntrAnat-<subject>_<acquisition>_TO_Talairach-ACPC', SetType( 'Transform ROI IntrAnat to Talairach-AC/PC-Anatomist' ),
+#       'ROI IntrAnat-<subject>_<acquisition>_TO_Talairach-MNI', SetType( 'Transform ROI IntrAnat to Talairach-MNI template-SPM'),
+#       'ROI IntrAnat-<subject>_<acquisition>_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+#       'ROI IntrAnat-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform Resection to another image' ),
+#       'ROI IntrAnat-<subject>_<acquisition>_Scanner_Based', SetType( 'Scanner Based Referential' ),
+#       ),
+#     )
+#)
+
+# SEEG DATA
+#seeg_content = (
+#
+#  "<subject>_{experiment}_{expNumber} ", SetType( 'SEEG Experiment' ),
+#     SetContent(
+#       "<subject>_<experiment>_{subexperiment}__{expId}", SetType( 'Raw SEEG recording' ),
+#       "<subject>_<experiment>__{expId}", SetType( 'Raw SEEG recording' ),
+#       "<subject>_<experiment>_{subexperiment}", SetType( 'Raw SEEG recording' ),
+#       "<subject>_<experiment>", SetType( 'Raw SEEG recording' ),
+#       "<seegAcq>", SetType( 'Raw SEEG recording' ),
+#       "{seegProcessing}", SetType( 'SEEG processing directory' ),
+#     ),
+#  "<subject>_{experiment}", SetType( 'SEEG Experiment' ),
+#     SetContent(
+#       "<subject>_<experiment>_{subexperiment}__{expId}", SetType( 'Raw SEEG recording' ),
+#       "<subject>_<experiment>__{expId}", SetType( 'Raw SEEG recording' ),
+#       "<subject>_<experiment>_{subexperiment}", SetType( 'Raw SEEG recording' ),
+#       "<subject>_<experiment>", SetType( 'Raw SEEG recording' ),
+#       "<seegAcq>", SetType( 'Raw SEEG recording' ),
+#       "{seegProcessing}", SetType( 'SEEG processing directory' ),
+#     ),
+#)
+
+
+
+insert( '{center}/{subject}',
+  't2mri', SetWeakAttr( 'modality', 't2mri' ),
+    apply( SetContent, t2mri_content)
+)
+
+insert( '{center}/{subject}',
+  'flair', SetWeakAttr( 'modality', 'flair' ),
+    apply( SetContent, flair_content)
+)
+
+insert( '{center}/{subject}',
+  'fgatir', SetWeakAttr( 'modality', 'fgatir' ),
+    apply( SetContent, fgatir_content)
+)
+
+insert( '{center}/{subject}',
+  'ct', SetWeakAttr( 'modality', 'ct' ),
+    apply( SetContent, ct_content)
+)
+
+insert( '{center}/{subject}',
+  'pet', SetWeakAttr( 'modality', 'pet' ),
+    apply( SetContent, pet_content)
+)
+
+insert( '{center}/{subject}',
+  'fmri_epile', SetWeakAttr( 'modality', 'fmri_epile' ),
+    apply( SetContent, fMRI_content)
+)
+
+insert( '{center}/{subject}',
+  'DTI', SetWeakAttr( 'modality', 'dtivolume' ),
+    apply( SetContent, dtivolume_content)
+)
+
+insert( '{center}/{subject}',
+  'Statistic-Data', SetWeakAttr( 'modality', 'statistic_data' ),
+    apply( SetContent, Statistics_content)
+)
+
+insert( '{center}/{subject}',
+  'FreesurferAtlas', SetWeakAttr( 'modality', 'freesurfer_atlas' ),
+    apply( SetContent, FreeSurferAtlas_content)
+)
+
+insert( '{center}/{subject}',
+  'HippoFreesurferAtlas', SetWeakAttr( 'modality', 'hippofreesurfer_atlas' ),
+    apply( SetContent, HippoFreesurferAtlas_content)
+)
+
+insert( '{center}/{subject}',
+  'Resection', SetWeakAttr( 'modality', 'resection' ),
+    apply( SetContent,resection_content)
+)
+
+#Antonella
+insert( '{center}/{subject}/QualityControl', '<subject>_ScreenshotMarsAtlas',SetType('Screenshot of Mars Atlas'))
+insert( '{center}/{subject}/QualityControl', '<subject>_MP4MarsAtlas',SetType('MP4 of Mars Atlas'))
+insert( '{center}/{subject}/QualityControl', '<subject>_MP4Electrodes',SetType('MP4 of Electrodes'))
+insert( '{center}/{subject}/QualityControl', '<subject>_InfosParcels',SetType('Parcels Infos'))
+#insert( '{center}/{subject}/QualityControl', '<subject>_MP4MarsAtlas',SetType('MP4 of Mars Atlas'))
+
+#####
+
+#insert( '{center}/{subject}',
+#  'ROI IntrAnat', SetWeakAttr( 'modality', 'roi_intranat' ),
+#    apply( SetContent,roi_intranat_content)
+#)
+
+insertFirst( '{center}/{subject}/t1mri/{acquisition}/registration', 'T1-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform Raw T1 MRI to another image' )
+)
+
+insert( '{center}/{subject}/t1mri/{acquisition}', 'y_<subject>_inverse', SetType( 'SPM normalization inverse deformation field' )
+)
+insert( '{center}/{subject}/t1mri/{acquisition}', 'y_<subject>', SetType( 'SPM normalization deformation field' )
+)
+
+insert( '{center}/{subject}/t1mri/{acquisition}','w<subject>',SetType('T1 SPM resampled in MNI'))
+
+insert( '{center}/{subject}/t1mri/{acquisition}/default_analysis/segmentation/mesh','leftAmygdala<subject>',SetType('leftAmygdala'))
+insert( '{center}/{subject}/t1mri/{acquisition}/default_analysis/segmentation/mesh','rightAmygdala<subject>',SetType('rightAmygdala'))
+insert( '{center}/{subject}/t1mri/{acquisition}/default_analysis/segmentation/mesh','leftanteroHippocampus<subject>',SetType('leftanteroHippocampus'))
+insert( '{center}/{subject}/t1mri/{acquisition}/default_analysis/segmentation/mesh','leftposteroHippocampus<subject>',SetType('leftposteroHippocampus'))
+insert( '{center}/{subject}/t1mri/{acquisition}/default_analysis/segmentation/mesh','rightanteroHippocampus<subject>',SetType('rightanteroHippocampus'))
+insert( '{center}/{subject}/t1mri/{acquisition}/default_analysis/segmentation/mesh','rightposteroHippocampus<subject>',SetType('rightposteroHippocampus'))
+insert( '{center}/{subject}/t1mri/{acquisition}/default_analysis/segmentation/mesh','rightHippocampus<subject>',SetType('rightHippo'))
+insert( '{center}/{subject}/t1mri/{acquisition}/default_analysis/segmentation/mesh','leftHippocampus<subject>',SetType('leftHippo'))
+
+insert( '{center}/{subject}/t1mri/{acquisition}/default_analysis/segmentation','leftHippocampus<subject>',SetType('leftHippocampusNII'))
+#insert( '{center}/{subject}/t1mri/{acquisition}/default_analysis/segmentation/mesh','leftposteroHippocampus<subject>',SetType('leftposteroHippocampusNII'))
+insert( '{center}/{subject}/t1mri/{acquisition}/default_analysis/segmentation','rightHippocampus<subject>',SetType('rightHippocampusNII'))
+#insert( '{center}/{subject}/t1mri/{acquisition}/default_analysis/segmentation/mesh','rightposteroHippocampus<subject>',SetType('rightposteroHippocampusNII'))
+
diff --git a/epilepsy-toolbox/hierarchies/brainvisa-3.2.0/images.py~ b/epilepsy-toolbox/hierarchies/brainvisa-3.2.0/images.py~
new file mode 100755
index 0000000..aba2aab
--- /dev/null
+++ b/epilepsy-toolbox/hierarchies/brainvisa-3.2.0/images.py~
@@ -0,0 +1,230 @@
+# -*- coding: utf-8 -*-
+#  This software and supporting documentation are distributed by
+#      Institut des Neurosciences de Grenoble - INSERM U836
+#      France
+#
+# This software is governed by the CeCILL license version 2 under
+# French law and abiding by the rules of distribution of free software.
+# You can  use, modify and/or redistribute the software under the
+# terms of the CeCILL license version 2 as circulated by CEA, CNRS
+# and INRIA at the following URL "http://www.cecill.info".
+#
+# As a counterpart to the access to the source code and  rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty  and the software's author,  the holder of the
+# economic rights,  and the successive licensors  have only  limited
+# liability.
+#
+# In this respect, the user's attention is drawn to the risks associated
+# with loading,  using,  modifying and/or developing or reproducing the
+# software by the user in light of its specific status of free software,
+# that may mean  that it is complicated to manipulate,  and  that  also
+# therefore means  that it is reserved for developers  and  experienced
+# professionals having in-depth computer knowledge. Users are therefore
+# encouraged to load and test the software's suitability as regards their
+# requirements in conditions enabling the security of their systems and/or
+# data to be ensured and,  more generally, to use and operate it in the
+# same conditions as regards security.
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL license version 2 and that you accept its terms.
+
+include( 'base' )
+include( 'anatomy' )
+
+
+
+t2mri_content = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>", SetType( 'T2 MRI' ),
+       'registration', SetContent(
+        'T2-<subject>_<acquisition>', SetType( 'Referential of T2 MRI' ),
+        'T2-<subject>_<acquisition>_TO_Talairach-ACPC', SetType( 'Transform T2 MRI to Talairach-AC/PC-Anatomist' ),
+        'T2-<subject>_<acquisition>_TO_Talairach-MNI', SetType( 'Transform T2 MRI to Talairach-MNI template-SPM'),
+        'T2-<subject>_<acquisition>_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+        'T2-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform T2 MRI to another image' ),
+        'T2-<subject>_<acquisition>_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+flair_content = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>", SetType( 'FLAIR' ),
+       'registration', SetContent(
+        'FLAIR-<subject>_<acquisition>', SetType( 'Referential of FLAIR' ),
+        'FLAIR-<subject>_<acquisition>_TO_Talairach-ACPC', SetType( 'Transform FLAIR to Talairach-AC/PC-Anatomist' ),
+        'FLAIR-<subject>_<acquisition>_TO_Talairach-MNI', SetType( 'Transform FLAIR to Talairach-MNI template-SPM'),
+        'FLAIR-<subject>_<acquisition>_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+        'FLAIR-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform FLAIR to another image' ),
+        'FLAIR-<subject>_<acquisition>_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+
+ct_content = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>", SetType( 'CT' ),
+       'registration', SetContent(
+       'CT-<subject>_<acquisition>', SetType( 'Referential of CT' ),
+       'CT-<subject>_<acquisition>_TO_Talairach-ACPC', SetType( 'Transform CT to Talairach-AC/PC-Anatomist' ),
+       'CT-<subject>_<acquisition>_TO_Talairach-MNI', SetType( 'Transform CT to Talairach-MNI template-SPM'),
+       'CT-<subject>_<acquisition>_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+       'CT-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform CT to another image' ),
+       'CT-<subject>_<acquisition>_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+pet_content = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>", SetType( 'PET' ),
+       'registration', SetContent(
+       'PET-<subject>_<acquisition>', SetType( 'Referential of PET' ),
+       'PET-<subject>_<acquisition>_TO_Talairach-ACPC', SetType( 'Transform PET to Talairach-AC/PC-Anatomist' ),
+       'PET-<subject>_<acquisition>_TO_Talairach-MNI', SetType( 'Transform PET to Talairach-MNI template-SPM'),
+       'PET-<subject>_<acquisition>_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+       'PET-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform PET to another image' ),
+       'PET-<subject>_<acquisition>_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+fMRI_content  = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>_{subacquisition}", SetType( 'fMRI-epile' ),
+       'registration', SetContent(
+       'fMRI-<subject>_<acquisition>_{subacquisition}', SetType( 'Referential of fMRI-epile' ),
+       'fMRI-<subject>_<acquisition>_{subacquisition}_TO_Talairach-ACPC', SetType( 'Transform fMRI-epile to Talairach-AC/PC-Anatomist' ),
+       'fMRI-<subject>_<acquisition>_{subacquisition}_TO_Talairach-MNI', SetType( 'Transform fMRI-epile to Talairach-MNI template-SPM'),
+       'fMRI-<subject>_<acquisition>_{subacquisition}_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+       'fMRI-<subject>_<acquisition>_{subacquisition}_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform fMRI-epile to another image' ),
+       'fMRI-<subject>_<acquisition>_{subacquisition}_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+Statistics_content  = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>_{subacquisition}", SetType( 'Statistic-Data' ),
+       'registration', SetContent(
+       'Statistics-<subject>_<acquisition>_{subacquisition}', SetType( 'Referential of Statistic-Data' ),
+       'Statistics-<subject>_<acquisition>_{subacquisition}_TO_Talairach-ACPC', SetType( 'Transform Statistic-Data to Talairach-AC/PC-Anatomist' ),
+       'Statistics-<subject>_<acquisition>_{subacquisition}_TO_Talairach-MNI', SetType( 'Transform Statistic-Data to Talairach-MNI template-SPM'),
+       'Statistics-<subject>_<acquisition>_{subacquisition}_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+       'Statistics-<subject>_<acquisition>_{subacquisition}_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform Statistic-Data to another image' ),
+       'Statistics-<subject>_<acquisition>_{subacquisition}_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+resection_content = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>", SetType( 'Resection' ),
+       'registration', SetContent(
+       'Resection-<subject>_<acquisition>', SetType( 'Referential of Resection' ),
+       'Resection-<subject>_<acquisition>_TO_Talairach-ACPC', SetType( 'Transform Resection to Talairach-AC/PC-Anatomist' ),
+       'Resection-<subject>_<acquisition>_TO_Talairach-MNI', SetType( 'Transform Resection to Talairach-MNI template-SPM'),
+       'Resection-<subject>_<acquisition>_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+       'Resection-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform Resection to another image' ),
+       'Resection-<subject>_<acquisition>_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+
+roi_intranat_content = (
+  "{acquisition}", SetDefaultAttributeValue( 'acquisition', default_acquisition ), SetNonMandatoryKeyAttribute( 'acquisition' ),
+     SetContent(
+       "<subject>-<acquisition>", SetType( 'ROI Intranat' ),
+       'registration', SetContent(
+       'ROI Intranat-<subject>_<acquisition>', SetType( 'Referential of ROI Intranat' ),
+       'ROI Intranat-<subject>_<acquisition>_TO_Talairach-ACPC', SetType( 'Transform ROI Intranat to Talairach-AC/PC-Anatomist' ),
+       'ROI Intranat-<subject>_<acquisition>_TO_Talairach-MNI', SetType( 'Transform ROI Intranat to Talairach-MNI template-SPM'),
+       'ROI Intranat-<subject>_<acquisition>_TO_Scanner_Based', SetType( 'Transformation to Scanner Based Referential' ),
+       'ROI Intranat-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform Resection to another image' ),
+       'ROI Intranat-<subject>_<acquisition>_Scanner_Based', SetType( 'Scanner Based Referential' ),
+       ),
+     )
+)
+# SEEG DATA
+#seeg_content = (
+#
+#  "<subject>_{experiment}_{expNumber} ", SetType( 'SEEG Experiment' ),
+#     SetContent(
+#       "<subject>_<experiment>_{subexperiment}__{expId}", SetType( 'Raw SEEG recording' ),
+#       "<subject>_<experiment>__{expId}", SetType( 'Raw SEEG recording' ),
+#       "<subject>_<experiment>_{subexperiment}", SetType( 'Raw SEEG recording' ),
+#       "<subject>_<experiment>", SetType( 'Raw SEEG recording' ),
+#       "<seegAcq>", SetType( 'Raw SEEG recording' ),
+#       "{seegProcessing}", SetType( 'SEEG processing directory' ),
+#     ),
+#  "<subject>_{experiment}", SetType( 'SEEG Experiment' ),
+#     SetContent(
+#       "<subject>_<experiment>_{subexperiment}__{expId}", SetType( 'Raw SEEG recording' ),
+#       "<subject>_<experiment>__{expId}", SetType( 'Raw SEEG recording' ),
+#       "<subject>_<experiment>_{subexperiment}", SetType( 'Raw SEEG recording' ),
+#       "<subject>_<experiment>", SetType( 'Raw SEEG recording' ),
+#       "<seegAcq>", SetType( 'Raw SEEG recording' ),
+#       "{seegProcessing}", SetType( 'SEEG processing directory' ),
+#     ),
+#)
+
+
+
+insert( '{center}/{subject}',
+  't2mri', SetWeakAttr( 'modality', 't2mri' ),
+    apply( SetContent, t2mri_content)
+)
+
+insert( '{center}/{subject}',
+  'flair', SetWeakAttr( 'modality', 'flair' ),
+    apply( SetContent, flair_content)
+)
+
+insert( '{center}/{subject}',
+  'ct', SetWeakAttr( 'modality', 'ct' ),
+    apply( SetContent, ct_content)
+)
+
+insert( '{center}/{subject}',
+  'pet', SetWeakAttr( 'modality', 'pet' ),
+    apply( SetContent, pet_content)
+)
+
+insert( '{center}/{subject}',
+  'fmri_epile', SetWeakAttr( 'modality', 'fmri_epile' ),
+    apply( SetContent, fMRI_content)
+)
+
+insert( '{center}/{subject}',
+  'Statistic-Data', SetWeakAttr( 'modality', 'statistic_data' ),
+    apply( SetContent, Statistics_content)
+)
+
+insert( '{center}/{subject}',
+  'Resection', SetWeakAttr( 'modality', 'resection' ),
+    apply( SetContent,resection_content)
+)
+
+insert( '{center}/{subject}',
+  'ROI Intranat', SetWeakAttr( 'modality', 'roi_intranat' ),
+    apply( SetContent,roi_intranat_content)
+)
+
+insertFirst( '{center}/{subject}/t1mri/{acquisition}/registration', 'T1-<subject>_<acquisition>_TO_{modalityTarget}_{acquisitionTarget}', SetType( 'Transform Raw T1 MRI to another image' )
+)
+
+insert( '{center}/{subject}/t1mri/{acquisition}', 'y_<subject>_inverse', SetType( 'SPM normalization inverse deformation field' )
+)
+insert( '{center}/{subject}/t1mri/{acquisition}', 'y_<subject>', SetType( 'SPM normalization deformation field' )
+)
+
+insert( '{center}/{subject}/t1mri/{acquisition}','w<subject>',SetType('T1 SPM resampled in MNI'))
diff --git a/epilepsy-toolbox/hierarchies/brainvisa-3.2.0/others.py b/epilepsy-toolbox/hierarchies/brainvisa-3.2.0/others.py
new file mode 100755
index 0000000..13ac182
--- /dev/null
+++ b/epilepsy-toolbox/hierarchies/brainvisa-3.2.0/others.py
@@ -0,0 +1,43 @@
+# -*- coding: utf-8 -*-
+#  This software and supporting documentation are distributed by
+#      Institut des Neurosciences de Grenoble - INSERM U836
+#      France
+#
+# This software is governed by the CeCILL license version 2 under
+# French law and abiding by the rules of distribution of free software.
+# You can  use, modify and/or redistribute the software under the
+# terms of the CeCILL license version 2 as circulated by CEA, CNRS
+# and INRIA at the following URL "http://www.cecill.info".
+#
+# As a counterpart to the access to the source code and  rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty  and the software's author,  the holder of the
+# economic rights,  and the successive licensors  have only  limited
+# liability.
+#
+# In this respect, the user's attention is drawn to the risks associated
+# with loading,  using,  modifying and/or developing or reproducing the
+# software by the user in light of its specific status of free software,
+# that may mean  that it is complicated to manipulate,  and  that  also
+# therefore means  that it is reserved for developers  and  experienced
+# professionals having in-depth computer knowledge. Users are therefore
+# encouraged to load and test the software's suitability as regards their
+# requirements in conditions enabling the security of their systems and/or
+# data to be ensured and,  more generally, to use and operate it in the
+# same conditions as regards security.
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL license version 2 and that you accept its terms.
+
+include( 'base' )
+include( 'anatomy' )
+
+insert( '{center}/{subject}/implantation',"<subject>",SetType('Final Export Dictionaries'),
+    "<subject>_{implantation_session}",SetType('Final Export Dictionaries'),
+)
+
+insert('','patientTemplate',SetType('PatientInfoTemplate'))
+
+insert('{center}/{subject}',"<subject>",SetType('SubjectInfo'))
+
+insert( '{center}/QualityControl', 'Outliers',SetType('Outliers'))
\ No newline at end of file
diff --git a/epilepsy-toolbox/hierarchies/brainvisa-3.2.0/seeg.py b/epilepsy-toolbox/hierarchies/brainvisa-3.2.0/seeg.py
new file mode 100755
index 0000000..9d2c960
--- /dev/null
+++ b/epilepsy-toolbox/hierarchies/brainvisa-3.2.0/seeg.py
@@ -0,0 +1,141 @@
+# -*- coding: utf-8 -*-
+#  This software and supporting documentation are distributed by
+#      Institut des Neurosciences de Grenoble - INSERM U836
+#      France
+#
+# This software is governed by the CeCILL license version 2 under
+# French law and abiding by the rules of distribution of free software.
+# You can  use, modify and/or redistribute the software under the 
+# terms of the CeCILL license version 2 as circulated by CEA, CNRS
+# and INRIA at the following URL "http://www.cecill.info". 
+#
+# As a counterpart to the access to the source code and  rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty  and the software's author,  the holder of the
+# economic rights,  and the successive licensors  have only  limited
+# liability.
+#
+# In this respect, the user's attention is drawn to the risks associated
+# with loading,  using,  modifying and/or developing or reproducing the
+# software by the user in light of its specific status of free software,
+# that may mean  that it is complicated to manipulate,  and  that  also
+# therefore means  that it is reserved for developers  and  experienced
+# professionals having in-depth computer knowledge. Users are therefore
+# encouraged to load and test the software's suitability as regards their
+# requirements in conditions enabling the security of their systems and/or 
+# data to be ensured and,  more generally, to use and operate it in the 
+# same conditions as regards security.
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL license version 2 and that you accept its terms.
+
+include( 'base' )
+include( 'anatomy' )
+
+
+# SEEG DATA
+seeg_content = (
+
+  "<subject>_{experiment}_{expNumber} ", SetType( 'SEEG Experiment' ),
+     SetContent(
+       "<subject>_<experiment>_{subexperiment}__{expId}", SetType( 'Raw SEEG recording' ), 
+       "<subject>_<experiment>__{expId}", SetType( 'Raw SEEG recording' ), 
+       "<subject>_<experiment>_{subexperiment}", SetType( 'Raw SEEG recording' ), 
+       "<subject>_<experiment>", SetType( 'Raw SEEG recording' ), 
+       "<seegAcq>", SetType( 'Raw SEEG recording' ),
+       "{seegProcessing}", SetType( 'SEEG processing directory' ),
+     ),
+  "<subject>_{experiment}", SetType( 'SEEG Experiment' ),
+     SetContent(
+       "<subject>_<experiment>_{subexperiment}__{expId}", SetType( 'Raw SEEG recording' ), 
+       "<subject>_<experiment>__{expId}", SetType( 'Raw SEEG recording' ), 
+       "<subject>_<experiment>_{subexperiment}", SetType( 'Raw SEEG recording' ), 
+       "<subject>_<experiment>", SetType( 'Raw SEEG recording' ), 
+       "<seegAcq>", SetType( 'Raw SEEG recording' ),
+       "{seegProcessing}", SetType( 'SEEG processing directory' ),
+       #"{seegAcq}", SetType( 'Elan EEG' ), 
+       #"{seegAcq}", SetType( 'Trigger'),
+       #"{localizer}", SetType ('JP Localizer'),
+       #"*_trials", SetType ('SEEG Trials Directory' ),
+         #SetContent(
+           #"*", SetType ('JP image'),
+   #),
+       #"*", SetType ('BrainTV Film'),
+       #"*", SetType ('JP image'),
+     ),
+
+  #"indexepi_{date}_{location}_{experiment}_{expNumber}", SetDefaultAttributeValue( 'expNumber', 1 ), SetNonMandatoryKeyAttribute( 'expNumber' ),
+     #SetType( 'Epilepsy Index SEEG Experiment' ), SetWeakAttr( 'experimentType', 'epilepsy index' ),
+     #SetContent(
+       #"EEG_{seegAcq}", SetType( 'Raw SEEG recording' ),
+       #"EEG_{seegAcq}", SetType( 'ImaGIN matlab files' ),
+       #"baselineEEG_{seegAcq}", SetType( 'ImaGIN matlab files' ),
+       #"EI_EEG_{seegAcq}__{freqMin}_{freqMax}_{window}_{onset}", SetType( 'ImaGIN matlab files' ),
+       #"EI_Group__{freqMin}_{freqMax}_{window}_{onset}", SetType( 'ImaGIN matlab files' ),
+       #"SPM_EI_EEG_{seegAcq}__{freqMin}_{freqMax}_{window}_{onset}", SetType( 'EpiIndex Directory' ),
+         #SetContent(
+           #"*", SetType( '4D Volume' ),
+           #"*", SetType( 'ImaGIN matlab files' ),
+	 #),
+       #"Results", SetType( 'Results Directory' ), SetContent( "*", SetType( 'PDF Report' ), )
+     #),
+
+  #"stim_{date}_{location}_{experiment}_{expNumber}", SetDefaultAttributeValue( 'expNumber', 1 ), SetNonMandatoryKeyAttribute( 'expNumber' ),
+     #SetType( 'Stimulation SEEG Experiment' ), SetWeakAttr( 'experimentType', 'stimulation' ),
+     #SetContent(
+       #"EEG_{seegAcq}", SetType( 'Raw SEEG recording' ),
+       #"EEG_{seegAcq}", SetType( 'ImaGIN matlab files' ),
+     #),
+)
+
+# Microelectrode recordings data
+mer_content = (
+  "<subject>_{experiment}_{expNumber}", SetType('MER Experiment'), SetContent(
+       "<subject>_<experiment>_{subexperiment}__{expId}", SetType('Raw MER recording'),
+       "<subject>_<experiment>__{expId}", SetType('Raw MER recording'),
+       "<subject>_<experiment>_{subexperiment}", SetType('Raw MER recording'),
+       "<subject>_<experiment>", SetType('Raw MER recording'),
+  ),
+  "<subject>_{experiment}", SetType('MER Experiment'), SetContent(
+       "<subject>_<experiment>_{subexperiment}__{expId}", SetType('Raw MER recording'),
+       "<subject>_<experiment>__{expId}", SetType('Raw MER recording'),
+       "<subject>_<experiment>_{subexperiment}", SetType('Raw MER recording'),
+       "<subject>_<experiment>", SetType('Raw MER recording'),
+  ),
+)
+
+# Eye movements
+eye_content = (
+  "<subject>_{experiment}_{expNumber}", SetType('Eye Tracking Experiment'), SetContent(
+     "<subject>_<experiment>_{subexperiment}__{expId}", SetType('Raw Eye Tracking'),
+     "<subject>_<experiment>__{expId}", SetType('Raw Eye Tracking'),
+     "<subject>_<experiment>_{subexperiment}", SetType('Raw Eye Tracking'),
+     "<subject>_<experiment>", SetType('Raw Eye Tracking'),
+  ),
+  "<subject>_{experiment}", SetType('Eye Tracking Experiment'), SetContent(
+     "<subject>_<experiment>_{subexperiment}__{expId}", SetType('Raw Eye Tracking'),
+     "<subject>_<experiment>__{expId}", SetType('Raw Eye Tracking'),
+     "<subject>_<experiment>_{subexperiment}", SetType('Raw Eye Tracking'),
+     "<subject>_<experiment>", SetType('Raw Eye Tracking'),
+  ),
+)
+
+# Including in the main database hierarchy
+insert( '{center}/{subject}',
+  'seeg', SetWeakAttr( 'modality', 'seeg' ),
+    apply( SetContent, seeg_content)
+)
+
+insert( '{center}/{subject}',
+  'mer', SetWeakAttr( 'modality', 'mer' ),
+    apply( SetContent, mer_content)
+)
+
+insert( '{center}/{subject}',
+  'eye', SetWeakAttr( 'modality', 'eye' ),
+    apply( SetContent, eye_content)
+)
+
+insert( '{center}/{subject}', 'seeg', SetWeakAttr( 'modality', 'seeg' ), SetContent("<subject>", SetType('Electrodes SEEG Labels'),SetWeakAttr( 'sEEG Labels', 'default' )))
+
+
diff --git a/epilepsy-toolbox/hierarchies/brainvisa-3.2.0/seeg.py~ b/epilepsy-toolbox/hierarchies/brainvisa-3.2.0/seeg.py~
new file mode 100755
index 0000000..93377fa
--- /dev/null
+++ b/epilepsy-toolbox/hierarchies/brainvisa-3.2.0/seeg.py~
@@ -0,0 +1,139 @@
+# -*- coding: utf-8 -*-
+#  This software and supporting documentation are distributed by
+#      Institut des Neurosciences de Grenoble - INSERM U836
+#      France
+#
+# This software is governed by the CeCILL license version 2 under
+# French law and abiding by the rules of distribution of free software.
+# You can  use, modify and/or redistribute the software under the 
+# terms of the CeCILL license version 2 as circulated by CEA, CNRS
+# and INRIA at the following URL "http://www.cecill.info". 
+#
+# As a counterpart to the access to the source code and  rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty  and the software's author,  the holder of the
+# economic rights,  and the successive licensors  have only  limited
+# liability.
+#
+# In this respect, the user's attention is drawn to the risks associated
+# with loading,  using,  modifying and/or developing or reproducing the
+# software by the user in light of its specific status of free software,
+# that may mean  that it is complicated to manipulate,  and  that  also
+# therefore means  that it is reserved for developers  and  experienced
+# professionals having in-depth computer knowledge. Users are therefore
+# encouraged to load and test the software's suitability as regards their
+# requirements in conditions enabling the security of their systems and/or 
+# data to be ensured and,  more generally, to use and operate it in the 
+# same conditions as regards security.
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL license version 2 and that you accept its terms.
+
+include( 'base' )
+include( 'anatomy' )
+
+
+# SEEG DATA
+seeg_content = (
+
+  "<subject>_{experiment}_{expNumber} ", SetType( 'SEEG Experiment' ),
+     SetContent(
+       "<subject>_<experiment>_{subexperiment}__{expId}", SetType( 'Raw SEEG recording' ), 
+       "<subject>_<experiment>__{expId}", SetType( 'Raw SEEG recording' ), 
+       "<subject>_<experiment>_{subexperiment}", SetType( 'Raw SEEG recording' ), 
+       "<subject>_<experiment>", SetType( 'Raw SEEG recording' ), 
+       "<seegAcq>", SetType( 'Raw SEEG recording' ),
+       "{seegProcessing}", SetType( 'SEEG processing directory' ),
+     ),
+  "<subject>_{experiment}", SetType( 'SEEG Experiment' ),
+     SetContent(
+       "<subject>_<experiment>_{subexperiment}__{expId}", SetType( 'Raw SEEG recording' ), 
+       "<subject>_<experiment>__{expId}", SetType( 'Raw SEEG recording' ), 
+       "<subject>_<experiment>_{subexperiment}", SetType( 'Raw SEEG recording' ), 
+       "<subject>_<experiment>", SetType( 'Raw SEEG recording' ), 
+       "<seegAcq>", SetType( 'Raw SEEG recording' ),
+       "{seegProcessing}", SetType( 'SEEG processing directory' ),
+       #"{seegAcq}", SetType( 'Elan EEG' ), 
+       #"{seegAcq}", SetType( 'Trigger'),
+       #"{localizer}", SetType ('JP Localizer'),
+       #"*_trials", SetType ('SEEG Trials Directory' ),
+         #SetContent(
+           #"*", SetType ('JP image'),
+   #),
+       #"*", SetType ('BrainTV Film'),
+       #"*", SetType ('JP image'),
+     ),
+
+  #"indexepi_{date}_{location}_{experiment}_{expNumber}", SetDefaultAttributeValue( 'expNumber', 1 ), SetNonMandatoryKeyAttribute( 'expNumber' ),
+     #SetType( 'Epilepsy Index SEEG Experiment' ), SetWeakAttr( 'experimentType', 'epilepsy index' ),
+     #SetContent(
+       #"EEG_{seegAcq}", SetType( 'Raw SEEG recording' ),
+       #"EEG_{seegAcq}", SetType( 'ImaGIN matlab files' ),
+       #"baselineEEG_{seegAcq}", SetType( 'ImaGIN matlab files' ),
+       #"EI_EEG_{seegAcq}__{freqMin}_{freqMax}_{window}_{onset}", SetType( 'ImaGIN matlab files' ),
+       #"EI_Group__{freqMin}_{freqMax}_{window}_{onset}", SetType( 'ImaGIN matlab files' ),
+       #"SPM_EI_EEG_{seegAcq}__{freqMin}_{freqMax}_{window}_{onset}", SetType( 'EpiIndex Directory' ),
+         #SetContent(
+           #"*", SetType( '4D Volume' ),
+           #"*", SetType( 'ImaGIN matlab files' ),
+	 #),
+       #"Results", SetType( 'Results Directory' ), SetContent( "*", SetType( 'PDF Report' ), )
+     #),
+
+  #"stim_{date}_{location}_{experiment}_{expNumber}", SetDefaultAttributeValue( 'expNumber', 1 ), SetNonMandatoryKeyAttribute( 'expNumber' ),
+     #SetType( 'Stimulation SEEG Experiment' ), SetWeakAttr( 'experimentType', 'stimulation' ),
+     #SetContent(
+       #"EEG_{seegAcq}", SetType( 'Raw SEEG recording' ),
+       #"EEG_{seegAcq}", SetType( 'ImaGIN matlab files' ),
+     #),
+)
+
+# Microelectrode recordings data
+mer_content = (
+  "<subject>_{experiment}_{expNumber}", SetType('MER Experiment'), SetContent(
+       "<subject>_<experiment>_{subexperiment}__{expId}", SetType('Raw MER recording'),
+       "<subject>_<experiment>__{expId}", SetType('Raw MER recording'),
+       "<subject>_<experiment>_{subexperiment}", SetType('Raw MER recording'),
+       "<subject>_<experiment>", SetType('Raw MER recording'),
+  ),
+  "<subject>_{experiment}", SetType('MER Experiment'), SetContent(
+       "<subject>_<experiment>_{subexperiment}__{expId}", SetType('Raw MER recording'),
+       "<subject>_<experiment>__{expId}", SetType('Raw MER recording'),
+       "<subject>_<experiment>_{subexperiment}", SetType('Raw MER recording'),
+       "<subject>_<experiment>", SetType('Raw MER recording'),
+  ),
+)
+
+# Eye movements
+eye_content = (
+  "<subject>_{experiment}_{expNumber}", SetType('Eye Tracking Experiment'), SetContent(
+     "<subject>_<experiment>_{subexperiment}__{expId}", SetType('Raw Eye Tracking'),
+     "<subject>_<experiment>__{expId}", SetType('Raw Eye Tracking'),
+     "<subject>_<experiment>_{subexperiment}", SetType('Raw Eye Tracking'),
+     "<subject>_<experiment>", SetType('Raw Eye Tracking'),
+  ),
+  "<subject>_{experiment}", SetType('Eye Tracking Experiment'), SetContent(
+     "<subject>_<experiment>_{subexperiment}__{expId}", SetType('Raw Eye Tracking'),
+     "<subject>_<experiment>__{expId}", SetType('Raw Eye Tracking'),
+     "<subject>_<experiment>_{subexperiment}", SetType('Raw Eye Tracking'),
+     "<subject>_<experiment>", SetType('Raw Eye Tracking'),
+  ),
+)
+
+# Including in the main database hierarchy
+insert( '{protocol}/{subject}',
+  'seeg', SetWeakAttr( 'modality', 'seeg' ),
+    apply( SetContent, seeg_content)
+)
+
+insert( '{protocol}/{subject}',
+  'mer', SetWeakAttr( 'modality', 'mer' ),
+    apply( SetContent, mer_content)
+)
+
+insert( '{protocol}/{subject}',
+  'eye', SetWeakAttr( 'modality', 'eye' ),
+    apply( SetContent, eye_content)
+)
+
+
diff --git a/epilepsy-toolbox/hierarchies/shared/electrodes.py b/epilepsy-toolbox/hierarchies/shared/electrodes.py
new file mode 100755
index 0000000..2ae557f
--- /dev/null
+++ b/epilepsy-toolbox/hierarchies/shared/electrodes.py
@@ -0,0 +1,39 @@
+# -*- coding: utf-8 -*-
+#  This software and supporting documentation are distributed by
+#      Institut des Neurosciences de Grenoble
+#      France
+#
+# This software is governed by the CeCILL license version 2 under
+# French law and abiding by the rules of distribution of free software.
+# You can  use, modify and/or redistribute the software under the 
+# terms of the CeCILL license version 2 as circulated by CEA, CNRS
+# and INRIA at the following URL "http://www.cecill.info". 
+#
+# As a counterpart to the access to the source code and  rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty  and the software's author,  the holder of the
+# economic rights,  and the successive licensors  have only  limited
+# liability.
+#
+# In this respect, the user's attention is drawn to the risks associated
+# with loading,  using,  modifying and/or developing or reproducing the
+# software by the user in light of its specific status of free software,
+# that may mean  that it is complicated to manipulate,  and  that  also
+# therefore means  that it is reserved for developers  and  experienced
+# professionals having in-depth computer knowledge. Users are therefore
+# encouraged to load and test the software's suitability as regards their
+# requirements in conditions enabling the security of their systems and/or 
+# data to be ensured and,  more generally, to use and operate it in the 
+# same conditions as regards security.
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL license version 2 and that you accept its terms.
+
+include( 'base' )
+
+# electrode models
+insert( '', 'electrode_models', SetType('Electrode Model Directory'), SetContent(
+  "{model_name}", SetType('Electrode Model')
+  )
+)
+
diff --git a/epilepsy-toolbox/initialization.py b/epilepsy-toolbox/initialization.py
new file mode 100755
index 0000000..5bdf606
--- /dev/null
+++ b/epilepsy-toolbox/initialization.py
@@ -0,0 +1,54 @@
+# -*- coding: utf-8 -*-
+#  This software and supporting documentation are distributed by
+#      Institut Federatif de Recherche 49
+#      CEA/NeuroSpin, Batiment 145,
+#      91191 Gif-sur-Yvette cedex
+#      France
+#
+# This software is governed by the CeCILL license version 2 under
+# French law and abiding by the rules of distribution of free software.
+# You can  use, modify and/or redistribute the software under the
+# terms of the CeCILL license version 2 as circulated by CEA, CNRS
+# and INRIA at the following URL "http://www.cecill.info".
+#
+# As a counterpart to the access to the source code and  rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty  and the software's author,  the holder of the
+# economic rights,  and the successive licensors  have only  limited
+# liability.
+#
+# In this respect, the user's attention is drawn to the risks associated
+# with loading,  using,  modifying and/or developing or reproducing the
+# software by the user in light of its specific status of free software,
+# that may mean  that it is complicated to manipulate,  and  that  also
+# therefore means  that it is reserved for developers  and  experienced
+# professionals having in-depth computer knowledge. Users are therefore
+# encouraged to load and test the software's suitability as regards their
+# requirements in conditions enabling the security of their systems and/or
+# data to be ensured and,  more generally, to use and operate it in the
+# same conditions as regards security.
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL license version 2 and that you accept its terms.
+
+#import os, re
+#from soma.wip.application.api import Application
+
+#import os.path
+
+
+
+#------------------------------------------------------------------------------
+#from epilepsy_configuration import EpilepsyConfiguration
+#from soma.wip.configuration import ConfigurationGroup
+#from soma.signature.api import Signature, Boolean
+#class EpilepsyConfiguration( ConfigurationGroup ):
+#  label = 'Epilepsy toolbox'
+#  icon = 'epilepsy.png'
+#  signature = Signature()
+#------------------------------------------------------------------------------
+
+#configuration = Application().configuration
+#if not configuration.signature.has_key('epilepsy'):
+#  configuration.add( 'epilepsy', EpilepsyConfiguration() )
+
diff --git a/epilepsy-toolbox/processes/category_documentation.minf b/epilepsy-toolbox/processes/category_documentation.minf
new file mode 100755
index 0000000..b83f72a
--- /dev/null
+++ b/epilepsy-toolbox/processes/category_documentation.minf
@@ -0,0 +1,18 @@
+<?xml version="1.0" encoding="utf-8" ?>
+<minf version="1.0">
+
+<xhtml name="en">
+  <h1>Epilepsy Electrode Implantation Surgery toolbox</h1>
+
+  <p>Documentation not written yet.
+  </p>
+</xhtml>
+
+<xhtml name="fr">
+  <h1>Boîte à outils pour l'implantation d'électrodes en chirurgie de l'épilepsie</h1>
+
+  <p>La documentation n'est pas encore écrite.
+  </p>
+</xhtml>
+
+</minf>
diff --git a/epilepsy-toolbox/processes/viewers/AnatomistShowElectrodeImplantation.py b/epilepsy-toolbox/processes/viewers/AnatomistShowElectrodeImplantation.py
new file mode 100755
index 0000000..0dafe5a
--- /dev/null
+++ b/epilepsy-toolbox/processes/viewers/AnatomistShowElectrodeImplantation.py
@@ -0,0 +1,55 @@
+#  This software and supporting documentation are distributed by
+#      Institut des Neurosciences de Grenoble
+#      France
+#
+# This software is governed by the CeCILL license version 2 under
+# French law and abiding by the rules of distribution of free software.
+# You can  use, modify and/or redistribute the software under the 
+# terms of the CeCILL license version 2 as circulated by CEA, CNRS
+# and INRIA at the following URL "http://www.cecill.info". 
+#
+# As a counterpart to the access to the source code and  rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty  and the software's author,  the holder of the
+# economic rights,  and the successive licensors  have only  limited
+# liability.
+#
+# In this respect, the user's attention is drawn to the risks associated
+# with loading,  using,  modifying and/or developing or reproducing the
+# software by the user in light of its specific status of free software,
+# that may mean  that it is complicated to manipulate,  and  that  also
+# therefore means  that it is reserved for developers  and  experienced
+# professionals having in-depth computer knowledge. Users are therefore
+# encouraged to load and test the software's suitability as regards their
+# requirements in conditions enabling the security of their systems and/or 
+# data to be ensured and,  more generally, to use and operate it in the 
+# same conditions as regards security.
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL license version 2 and that you accept its terms.
+
+from neuroProcesses import *
+import shfjGlobals
+from brainvisa import anatomist
+
+name = 'Anatomist Show Electrode Implantation'
+userLevel = 0
+roles = ('viewer',)
+
+def validation():
+    anatomist.validation()
+
+signature = Signature(
+    'impl', ReadDiskItem( 'Electrode Implantation', 'Electrode Implantation format' ), 
+    't1mri', ReadDiskItem( 'Raw T1 MRI', shfjGlobals.aimsVolumeFormats ),
+    )
+
+
+def initialization( self ):
+    self.linkParameters('impl', 't1mri')
+
+
+def execution( self, context ):
+    #le = LocateElectrodes() 
+    #le.loadElectrodes()
+    return
diff --git a/epilepsy-toolbox/processes/viewers/AnatomistShowElectrodeImplantation.pyc b/epilepsy-toolbox/processes/viewers/AnatomistShowElectrodeImplantation.pyc
new file mode 100755
index 0000000..160e51b
Binary files /dev/null and b/epilepsy-toolbox/processes/viewers/AnatomistShowElectrodeImplantation.pyc differ
diff --git a/epilepsy-toolbox/processes/viewers/AnatomistShowElectrodeModel.py b/epilepsy-toolbox/processes/viewers/AnatomistShowElectrodeModel.py
new file mode 100755
index 0000000..58d7768
--- /dev/null
+++ b/epilepsy-toolbox/processes/viewers/AnatomistShowElectrodeModel.py
@@ -0,0 +1,62 @@
+# -*- coding: utf-8 -*-
+#  This software and supporting documentation are distributed by
+#      Institut des Neurosciences de Grenoble
+#      France
+#
+# This software is governed by the CeCILL license version 2 under
+# French law and abiding by the rules of distribution of free software.
+# You can  use, modify and/or redistribute the software under the 
+# terms of the CeCILL license version 2 as circulated by CEA, CNRS
+# and INRIA at the following URL "http://www.cecill.info". 
+#
+# As a counterpart to the access to the source code and  rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty  and the software's author,  the holder of the
+# economic rights,  and the successive licensors  have only  limited
+# liability.
+#
+# In this respect, the user's attention is drawn to the risks associated
+# with loading,  using,  modifying and/or developing or reproducing the
+# software by the user in light of its specific status of free software,
+# that may mean  that it is complicated to manipulate,  and  that  also
+# therefore means  that it is reserved for developers  and  experienced
+# professionals having in-depth computer knowledge. Users are therefore
+# encouraged to load and test the software's suitability as regards their
+# requirements in conditions enabling the security of their systems and/or 
+# data to be ensured and,  more generally, to use and operate it in the 
+# same conditions as regards security.
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL license version 2 and that you accept its terms.
+
+from neuroProcesses import *
+import shfjGlobals
+from brainvisa import anatomist
+import glob, registration
+#from editor import ElectrodeEditorDialog
+
+name = 'Anatomist Show Electrode Model'
+userLevel = 0
+roles = ('viewer',)
+
+def validation():
+    anatomist.validation()
+
+signature = Signature(
+    'model', ReadDiskItem( 'Electrode Model', 'Electrode Model format' ),
+)
+
+
+def initialization( self ):
+  pass
+
+def execution( self, context ):
+  a = anatomist.Anatomist()
+  #elec = ElectrodeEditorDialog(a)
+  #elec.open(self.model.fullPath())
+  #meshes = elecDialog.getAnatomistObjects()
+  w = a.createWindow('Axial')
+  #a.addObjects(meshes, [w,])
+  #return (w, elec, meshes)
+  return (w,)
+
diff --git a/epilepsy-toolbox/processes/viewers/AnatomistShowElectrodeModel.pyc b/epilepsy-toolbox/processes/viewers/AnatomistShowElectrodeModel.pyc
new file mode 100755
index 0000000..112846b
Binary files /dev/null and b/epilepsy-toolbox/processes/viewers/AnatomistShowElectrodeModel.pyc differ
diff --git a/epilepsy-toolbox/python/epilepsy_configuration.py b/epilepsy-toolbox/python/epilepsy_configuration.py
new file mode 100755
index 0000000..514793d
--- /dev/null
+++ b/epilepsy-toolbox/python/epilepsy_configuration.py
@@ -0,0 +1,52 @@
+# -*- coding: utf-8 -*-
+
+#  This software and supporting documentation were developed by
+#  INSERM U836 - Institut des Neurosciences de Grenoble
+#
+# This software is governed by the CeCILL license version 2 under
+# French law and abiding by the rules of distribution of free software.
+# You can  use, modify and/or redistribute the software under the
+# terms of the CeCILL license version 2 as circulated by CEA, CNRS
+# and INRIA at the following URL "http://www.cecill.info".
+#
+# As a counterpart to the access to the source code and  rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty  and the software's author,  the holder of the
+# economic rights,  and the successive licensors  have only  limited
+# liability.
+#
+# In this respect, the user's attention is drawn to the risks associated
+# with loading,  using,  modifying and/or developing or reproducing the
+# software by the user in light of its specific status of free software,
+# that may mean  that it is complicated to manipulate,  and  that  also
+# therefore means  that it is reserved for developers  and  experienced
+# professionals having in-depth computer knowledge. Users are therefore
+# encouraged to load and test the software's suitability as regards their
+# requirements in conditions enabling the security of their systems and/or
+# data to be ensured and,  more generally, to use and operate it in the
+# same conditions as regards security.
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL license version 2 and that you accept its terms.
+
+
+'''
+@author: Manik Bhattacharjee
+@organization: U{Institut des Neurosciences de Grenoble - INSERM U836<http://neurosciences.ujf-grenoble.fr/>} 
+@license: U{CeCILL version 2<http://www.cecill.info/licences/Licence_CeCILL_V2-en.html>}
+'''
+__docformat__ = "epytext en"
+
+import os.path
+
+from soma.wip.configuration import ConfigurationGroup
+from soma.signature.api import Signature, Boolean
+
+#------------------------------------------------------------------------------
+class EpilepsyConfiguration( ConfigurationGroup ):
+  label = 'Epilepsy toolbox'
+  icon = 'epilepsy.png'
+  signature = Signature(
+#    'check_spam_models', Boolean(), { 'defaultValue' : True,
+#      'doc' : 'Check presence of SPAM identification models, and ask whether to install them' },
+  )
diff --git a/epilepsy-toolbox/types/epilepsy.py b/epilepsy-toolbox/types/epilepsy.py
new file mode 100755
index 0000000..08c69e1
--- /dev/null
+++ b/epilepsy-toolbox/types/epilepsy.py
@@ -0,0 +1,226 @@
+# -*- coding: utf-8 -*-
+#  This software and supporting documentation are distributed by
+#      INSERM U836 - Institut des Neurosciences de Grenoble
+#      France
+#
+# This software is governed by the CeCILL license version 2 under
+# French law and abiding by the rules of distribution of free software.
+# You can  use, modify and/or redistribute the software under the
+# terms of the CeCILL license version 2 as circulated by CEA, CNRS
+# and INRIA at the following URL "http://www.cecill.info".
+#
+# As a counterpart to the access to the source code and  rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty  and the software's author,  the holder of the
+# economic rights,  and the successive licensors  have only  limited
+# liability.
+#
+# In this respect, the user's attention is drawn to the risks associated
+# with loading,  using,  modifying and/or developing or reproducing the
+# software by the user in light of its specific status of free software,
+# that may mean  that it is complicated to manipulate,  and  that  also
+# therefore means  that it is reserved for developers  and  experienced
+# professionals having in-depth computer knowledge. Users are therefore
+# encouraged to load and test the software's suitability as regards their
+# requirements in conditions enabling the security of their systems and/or
+# data to be ensured and,  more generally, to use and operate it in the
+# same conditions as regards security.
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL license version 2 and that you accept its terms.
+
+import shfjGlobals
+
+include( 'builtin' )
+include( 'registration' )
+
+####################### File Formats ##########################
+Format( 'Electrode Implantation format', 'f|*.elecimplant' )
+Format( 'Electrode Label Format', 'f|*.eleclabel')
+Format( 'Electrode sEEG Label Format', 'f|*.seegeleclabel')
+Format( 'Resection json', 'f|*.resection')
+Format( 'Electrode Model format', 'f|*.elecdef' )
+Format( 'Subject Information format', 'f|*.subjectinfo')
+Format( 'Patient Template format', 'f|*.patienttemplate')
+Format( 'PTS format', 'f|*.pts' )
+Format( 'EEG TRC format', 'f|*.TRC' )
+Format( 'Elan EEG format', ['f|*.eeg', 'f|*.eeg.ent', 'f|*.notes.txt', 'f|*.elec.out'] )
+Format ('Elan trigger format', 'f|*.pos')
+Format ('JP Localizer format', 'f|*.par')
+Format ('Blackrock MER format', ['f|*.ccf', 'f|*.nev', 'f|*.ns5'] )
+#Format ('ImaGIN matlab format', ['f|*.mat', 'f|*.dat', 'f|*.hdr', 'f|*.txt'] )
+Format ( 'Eyelink format', 'f|*.edf' )
+Format ( 'PDF file', "f|*.pdf" )
+Format ( 'Powerpoint file', ["f|*.ppt","f|*.pptx"] )
+Format( 'Atlas metrics', 'f|*.atlasmetrics')
+
+####################### File types ##########################
+# Images
+# FileType( 'T2 MRI', '3D Volume' ) -> already in builtin.py
+
+FileType( 'CT', '3D Volume' )
+FileType( 'PET', '3D Volume' ) # Or should it be 4D ?
+FileType( 'fMRI-epile', '3D Volume') #'4D Volume'
+FileType( 'Statistic-Data', '3D Volume')
+FileType('T1 SPM resampled in MNI', '3D Volume')
+FileType('FLAIR', '3D Volume')
+FileType('FGATIR','3D Volume')
+FileType('Resection', 'Label Volume')
+FileType('ROI IntrAnat', 'ROI Graph')
+FileType('Final Export Dictionaries','CSV file')
+FileType('FreesurferAtlas','3D Volume')
+FileType('HippoFreesurferAtlas','3D Volume')
+FileType('DTIVolume','3D Volume')
+
+FileType('leftAmygdala','Mesh')
+FileType('rightAmygdala','Mesh')
+FileType('leftHippo','Mesh')
+FileType('rightHippo','Mesh')
+FileType('leftanteroHippocampus','Mesh')
+FileType('leftposteroHippocampus','Mesh')
+FileType('rightanteroHippocampus','Mesh')
+FileType('rightposteroHippocampus','Mesh')
+
+FileType('leftHippocampusNII','3D Volume')
+#FileType('leftposteroHippocampusNII','3D Volume')
+FileType('rightHippocampusNII','3D Volume')
+#FileType('rightposteroHippocampusNII','3D Volume')
+
+FileType('Screenshot of Mars Atlas' ,'Any Type','PNG image')
+#FileType('GIF of Mars Atlas','Any Type', 'GIF image')
+#FileType('GIF of Electrodes','Any Type', 'GIF image')
+FileType('Parcels Infos','Any Type', 'Atlas metrics')
+FileType('Outliers','Any Type', 'Atlas metrics')
+FileType('MP4 of Mars Atlas', 'Any Type','MP4 film')
+FileType('MP4 of Electrodes','Any Type', 'MP4 film')
+
+#Patient
+FileType('SubjectInfo','Any Type', 'Subject Information format')
+FileType('PatientInfoTemplate','Any Type', 'Patient Template format')
+
+# Electrodes
+FileType( 'Electrode Model', 'Any Type', 'Electrode Model format' )
+FileType( 'Electrode Implantation', 'Any Type', 'Electrode Implantation format' )
+FileType( 'Electrode Implantation PTS', 'Any Type', 'PTS format' )
+FileType( 'Electrode Implantation TXT', 'Any Type', 'Text file' )
+FileType( 'Electrode Implantation Position TXT', 'Electrode Implantation TXT' )
+FileType( 'Electrode Implantation Name TXT', 'Electrode Implantation TXT' )
+FileType( 'Electrodes Labels', 'Any Type', 'Electrode Label Format' )
+FileType( 'Electrodes SEEG Labels', 'Any Type', 'Electrode sEEG Label Format' )
+
+# Scanned images of the implantation (surgeon drawing)
+FileType( 'Electrode Implantation Image', '2D Image' )
+FileType( 'Electrode Implantation Sagittal Image', 'Electrode Implantation Image')
+FileType( 'Electrode Implantation Coronal Image', 'Electrode Implantation Image')
+FileType( 'Electrode Implantation report', 'Any Type', ['PDF file', 'Powerpoint file'])
+FileType( 'Electrode Implantation PDF report', 'Electrode Implantation report', 'PDF file')
+FileType( 'Electrode Implantation Powerpoint report', 'Electrode Implantation report', 'Powerpoint file')
+FileType( 'Electrode List PDF', 'Any Type', 'PDF file')
+
+FileType( 'Electrode Implantation Directory', 'Directory', 'Directory' )
+FileType( 'Electrode Model Directory', 'Directory', 'Directory' )
+
+# Referentials and transformations
+FileType( 'Referential of Electrode', 'Referential' )
+FileType( 'Electrode Implantation transformation', 'Transformation Matrix', 'Transformation Matrix' )
+
+FileType( 'Transform Raw T1 MRI to another image', 'Transformation Matrix')
+FileType( 'SPM normalization inverse deformation field', 'Any Type','BrainVISA volume formats' ) #Most probably Nifti, 5-dim
+FileType( 'SPM normalization deformation field', 'Any Type','BrainVISA volume formats' ) #Most probably Nifti, 5-dimx,y,z,t,vectorDirection (three values)
+
+FileType( 'Referential of T2 MRI', 'Referential' )
+FileType( 'Transform T2 MRI to Talairach-AC/PC-Anatomist', 'Transformation Matrix')
+FileType( 'Transform T2 MRI to Talairach-MNI template-SPM', 'SPM normalization matrix')
+FileType( 'Transform T2 MRI to another image', 'Transformation Matrix')
+
+FileType( 'Referential of CT', 'Referential' )
+FileType( 'Transform CT to Talairach-AC/PC-Anatomist', 'Transformation Matrix')
+FileType( 'Transform CT to Talairach-MNI template-SPM', 'SPM normalization matrix')
+FileType( 'Transform CT to another image', 'Transformation Matrix')
+
+FileType( 'Referential of PET', 'Referential' )
+FileType( 'Transform PET to Talairach-AC/PC-Anatomist', 'Transformation Matrix')
+FileType( 'Transform PET to Talairach-MNI template-SPM', 'SPM normalization matrix')
+FileType( 'Transform PET to another image', 'Transformation Matrix')
+
+FileType( 'Referential of fMRI-epile', 'Referential' )
+FileType( 'Transform fMRI-epile to Talairach-AC/PC-Anatomist', 'Transformation Matrix')
+FileType( 'Transform fMRI-epile to Talairach-MNI template-SPM', 'SPM normalization matrix')
+FileType( 'Transform fMRI-epile to another image', 'Transformation Matrix')
+
+FileType( 'Referential of Statistic-Data', 'Referential' )
+FileType( 'Transform Statistic-Data to Talairach-AC/PC-Anatomist', 'Transformation Matrix')
+FileType( 'Transform Statistic-Data to Talairach-MNI template-SPM', 'SPM normalization matrix')
+FileType( 'Transform Statistic-Data to another image', 'Transformation Matrix')
+
+FileType( 'Referential of FreesurferAtlas', 'Referential' )
+FileType( 'Transform FreesurferAtlas to Talairach-AC/PC-Anatomist', 'Transformation Matrix')
+FileType( 'Transform FreesurferAtlas to Talairach-MNI template-SPM', 'SPM normalization matrix')
+FileType( 'Transform FreesurferAtlas to another image', 'Transformation Matrix')
+
+FileType( 'Referential of HippoFreesurferAtlas', 'Referential' )
+FileType( 'Transform HippoFreesurferAtlas to Talairach-AC/PC-Anatomist', 'Transformation Matrix')
+FileType( 'Transform HippoFreesurferAtlas to Talairach-MNI template-SPM', 'SPM normalization matrix')
+FileType( 'Transform HippoFreesurferAtlas to another image', 'Transformation Matrix')
+
+FileType( 'Referential of FLAIR', 'Referential' )
+FileType( 'Transform FLAIR to Talairach-AC/PC-Anatomist', 'Transformation Matrix')
+FileType( 'Transform FLAIR to Talairach-MNI template-SPM', 'SPM normalization matrix')
+FileType( 'Transform FLAIR to another image', 'Transformation Matrix')
+
+FileType( 'Referential of FGATIR', 'Referential' )
+FileType( 'Transform FGATIR to Talairach-AC/PC-Anatomist', 'Transformation Matrix')
+FileType( 'Transform FGATIR to Talairach-MNI template-SPM', 'SPM normalization matrix')
+FileType( 'Transform FGATIR to another image', 'Transformation Matrix')
+
+FileType( 'Referential of DTIVolume', 'Referential' )
+FileType( 'Transform DTIVolume to Talairach-AC/PC-Anatomist', 'Transformation Matrix')
+FileType( 'Transform DTIVolume to Talairach-MNI template-SPM', 'SPM normalization matrix')
+FileType( 'Transform DTIVolume to another image', 'Transformation Matrix')
+
+
+FileType( 'Referential of Resection', 'Referential' )
+FileType( 'Transform Resection to Talairach-AC/PC-Anatomist', 'Transformation Matrix')
+FileType( 'Transform Resection to Talairach-MNI template-SPM', 'SPM normalization matrix')
+FileType( 'Transform Resection to another image', 'Transformation Matrix')
+
+FileType( 'Referential of ROI IntrAnat', 'Referential' )
+FileType( 'Transform ROI IntrAnat to Talairach-AC/PC-Anatomist', 'Transformation Matrix')
+FileType( 'Transform ROI IntrAnat to Talairach-MNI template-SPM', 'SPM normalization matrix')
+FileType( 'Transform ROI IntrAnat to another image', 'Transformation Matrix')
+
+# SEEG
+FileType( 'SEEG Experiment', 'Directory', 'Directory' )
+FileType( 'Cognitive SEEG Experiment', 'SEEG Experiment' )
+FileType( 'Epilepsy Index SEEG Experiment', 'SEEG Experiment' )
+FileType( 'Stimulation SEEG Experiment', 'SEEG Experiment' )
+
+FileType( 'SEEG processing directory', 'Directory', 'Directory' )
+
+FileType( 'SEEG Trials Directory', 'Directory', 'Directory' )
+
+FileType( 'SEEG recording', 'Any Type', ['EEG TRC format', 'Elan EEG format'])#'ImaGIN matlab format'
+FileType( 'Raw SEEG recording', 'SEEG recording', 'EEG TRC format' )
+
+FileType( 'EpiIndex Directory', 'Directory', 'Directory' )
+FileType( 'Results Directory', 'Directory', 'Directory' )
+FileType( 'ImaGIN matlab files', 'Any Type', ['Matlab file', 'Text Data Table'] )
+FileType( 'PDF Report', 'Any Type', 'PDF file' )
+
+FileType( 'Elan EEG', 'SEEG recording', 'Elan EEG format' )
+FileType( 'Trigger', 'Any Type', 'Elan trigger format' )
+
+FileType( 'JP Localizer', 'Any Type', 'JP Localizer format' )
+FileType( 'JP image', 'Any Type', 'JPEG image' )
+FileType( 'BrainTV Film', 'Any Type', 'AVI film' )
+
+# Micro Electrode Recordings*
+FileType( 'MER Experiment', 'Directory', 'Directory' )
+FileType( 'Raw MER recording', 'Any Type', 'Blackrock MER format' )
+
+# Eye movements
+FileType( 'Eye Tracking Experiment', 'Directory', 'Directory' )
+FileType( 'Raw Eye Tracking', 'Any Type', 'Eyelink format' )
+
+# Resection
+FileType( 'Resection Description' ,'Any Type','Resection json')
diff --git a/epilepsy-toolbox/types/epilepsy.py~ b/epilepsy-toolbox/types/epilepsy.py~
new file mode 100755
index 0000000..1ea7d9d
--- /dev/null
+++ b/epilepsy-toolbox/types/epilepsy.py~
@@ -0,0 +1,166 @@
+# -*- coding: utf-8 -*-
+#  This software and supporting documentation are distributed by
+#      INSERM U836 - Institut des Neurosciences de Grenoble
+#      France
+#
+# This software is governed by the CeCILL license version 2 under
+# French law and abiding by the rules of distribution of free software.
+# You can  use, modify and/or redistribute the software under the
+# terms of the CeCILL license version 2 as circulated by CEA, CNRS
+# and INRIA at the following URL "http://www.cecill.info".
+#
+# As a counterpart to the access to the source code and  rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty  and the software's author,  the holder of the
+# economic rights,  and the successive licensors  have only  limited
+# liability.
+#
+# In this respect, the user's attention is drawn to the risks associated
+# with loading,  using,  modifying and/or developing or reproducing the
+# software by the user in light of its specific status of free software,
+# that may mean  that it is complicated to manipulate,  and  that  also
+# therefore means  that it is reserved for developers  and  experienced
+# professionals having in-depth computer knowledge. Users are therefore
+# encouraged to load and test the software's suitability as regards their
+# requirements in conditions enabling the security of their systems and/or
+# data to be ensured and,  more generally, to use and operate it in the
+# same conditions as regards security.
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL license version 2 and that you accept its terms.
+
+import shfjGlobals
+
+include( 'builtin' )
+include( 'registration' )
+
+####################### File Formats ##########################
+Format( 'Electrode Implantation format', 'f|*.elecimplant' )
+Format( 'Electrode Label Format', 'f|*.eleclabel')
+Format( 'Electrode Model format', 'f|*.elecdef' )
+Format( 'PTS format', 'f|*.pts' )
+Format( 'EEG TRC format', 'f|*.trc' )
+Format( 'Elan EEG format', ['f|*.eeg', 'f|*.eeg.ent', 'f|*.notes.txt', 'f|*.elec.out'] )
+Format ('Elan trigger format', 'f|*.pos')
+Format ('JP Localizer format', 'f|*.par')
+Format ('Blackrock MER format', ['f|*.ccf', 'f|*.nev', 'f|*.ns5'] )
+#Format ('ImaGIN matlab format', ['f|*.mat', 'f|*.dat', 'f|*.hdr', 'f|*.txt'] )
+Format ( 'Eyelink format', 'f|*.edf' )
+Format ( 'PDF file', "f|*.pdf" )
+Format ( 'Powerpoint file', ["f|*.ppt","f|*.pptx"] )
+
+####################### File types ##########################
+# Images
+# FileType( 'T2 MRI', '3D Volume' ) -> already in builtin.py
+
+FileType( 'CT', '3D Volume' )
+FileType( 'PET', '3D Volume' ) # Or should it be 4D ?
+FileType( 'fMRI-epile', '3D Volume') #'4D Volume'
+FileType( 'Statistic-Data', '3D Volume')
+FileType('T1 SPM resampled in MNI', '3D Volume')
+FileType('FLAIR', '3D Volume')
+FileType('Resection', 'Label Volume')
+FileType('ROI IntrAnat', 'ROI')
+
+# Electrodes
+FileType( 'Electrode Model', 'Any Type', 'Electrode Model format' )
+FileType( 'Electrode Implantation', 'Any Type', 'Electrode Implantation format' )
+FileType( 'Electrode Implantation PTS', 'Any Type', 'PTS format' )
+FileType( 'Electrode Implantation TXT', 'Any Type', 'Text file' )
+FileType( 'Electrode Implantation Position TXT', 'Electrode Implantation TXT' )
+FileType( 'Electrode Implantation Name TXT', 'Electrode Implantation TXT' )
+FileType( 'Electrodes Labels', 'Any Type', 'Electrode Label Format' )
+
+# Scanned images of the implantation (surgeon drawing)
+FileType( 'Electrode Implantation Image', '2D Image' )
+FileType( 'Electrode Implantation Sagittal Image', 'Electrode Implantation Image')
+FileType( 'Electrode Implantation Coronal Image', 'Electrode Implantation Image')
+FileType( 'Electrode Implantation report', 'Any Type', ['PDF file', 'Powerpoint file'])
+FileType( 'Electrode Implantation PDF report', 'Electrode Implantation report', 'PDF file')
+FileType( 'Electrode Implantation Powerpoint report', 'Electrode Implantation report', 'Powerpoint file')
+FileType( 'Electrode List PDF', 'Any Type', 'PDF file')
+
+FileType( 'Electrode Implantation Directory', 'Directory', 'Directory' )
+FileType( 'Electrode Model Directory', 'Directory', 'Directory' )
+
+# Referentials and transformations
+FileType( 'Referential of Electrode', 'Referential' )
+FileType( 'Electrode Implantation transformation', 'Transformation Matrix', 'Transformation Matrix' )
+
+FileType( 'Transform Raw T1 MRI to another image', 'Transformation Matrix')
+FileType( 'SPM normalization inverse deformation field', 'Any Type','BrainVISA volume formats' ) #Most probably Nifti, 5-dim
+FileType( 'SPM normalization deformation field', 'Any Type','BrainVISA volume formats' ) #Most probably Nifti, 5-dimx,y,z,t,vectorDirection (three values)
+
+FileType( 'Referential of T2 MRI', 'Referential' )
+FileType( 'Transform T2 MRI to Talairach-AC/PC-Anatomist', 'Transformation Matrix')
+FileType( 'Transform T2 MRI to Talairach-MNI template-SPM', 'SPM normalization matrix')
+FileType( 'Transform T2 MRI to another image', 'Transformation Matrix')
+
+FileType( 'Referential of CT', 'Referential' )
+FileType( 'Transform CT to Talairach-AC/PC-Anatomist', 'Transformation Matrix')
+FileType( 'Transform CT to Talairach-MNI template-SPM', 'SPM normalization matrix')
+FileType( 'Transform CT to another image', 'Transformation Matrix')
+
+FileType( 'Referential of PET', 'Referential' )
+FileType( 'Transform PET to Talairach-AC/PC-Anatomist', 'Transformation Matrix')
+FileType( 'Transform PET to Talairach-MNI template-SPM', 'SPM normalization matrix')
+FileType( 'Transform PET to another image', 'Transformation Matrix')
+
+FileType( 'Referential of fMRI-epile', 'Referential' )
+FileType( 'Transform fMRI-epile to Talairach-AC/PC-Anatomist', 'Transformation Matrix')
+FileType( 'Transform fMRI-epile to Talairach-MNI template-SPM', 'SPM normalization matrix')
+FileType( 'Transform fMRI-epile to another image', 'Transformation Matrix')
+
+FileType( 'Referential of Statistic-Data', 'Referential' )
+FileType( 'Transform Statistic-Data to Talairach-AC/PC-Anatomist', 'Transformation Matrix')
+FileType( 'Transform Statistic-Data to Talairach-MNI template-SPM', 'SPM normalization matrix')
+FileType( 'Transform Statistic-Data to another image', 'Transformation Matrix')
+
+FileType( 'Referential of FLAIR', 'Referential' )
+FileType( 'Transform FLAIR to Talairach-AC/PC-Anatomist', 'Transformation Matrix')
+FileType( 'Transform FLAIR to Talairach-MNI template-SPM', 'SPM normalization matrix')
+FileType( 'Transform FLAIR to another image', 'Transformation Matrix')
+
+FileType( 'Referential of Resection', 'Referential' )
+FileType( 'Transform Resection to Talairach-AC/PC-Anatomist', 'Transformation Matrix')
+FileType( 'Transform Resection to Talairach-MNI template-SPM', 'SPM normalization matrix')
+FileType( 'Transform Resection to another image', 'Transformation Matrix')
+
+FileType( 'Referential of ROI IntrAnat', 'Referential' )
+FileType( 'Transform ROI IntrAnat to Talairach-AC/PC-Anatomist', 'Transformation Matrix')
+FileType( 'Transform ROI IntrAnat to Talairach-MNI template-SPM', 'SPM normalization matrix')
+FileType( 'Transform ROI IntrAnat to another image', 'Transformation Matrix')
+
+# SEEG
+FileType( 'SEEG Experiment', 'Directory', 'Directory' )
+FileType( 'Cognitive SEEG Experiment', 'SEEG Experiment' )
+FileType( 'Epilepsy Index SEEG Experiment', 'SEEG Experiment' )
+FileType( 'Stimulation SEEG Experiment', 'SEEG Experiment' )
+
+FileType( 'SEEG processing directory', 'Directory', 'Directory' )
+
+FileType( 'SEEG Trials Directory', 'Directory', 'Directory' )
+
+FileType( 'SEEG recording', 'Any Type', ['EEG TRC format', 'Elan EEG format'])#'ImaGIN matlab format'
+FileType( 'Raw SEEG recording', 'SEEG recording', 'EEG TRC format' )
+
+FileType( 'EpiIndex Directory', 'Directory', 'Directory' )
+FileType( 'Results Directory', 'Directory', 'Directory' )
+FileType( 'ImaGIN matlab files', 'Any Type', ['Matlab file', 'Text Data Table'] )
+FileType( 'PDF Report', 'Any Type', 'PDF file' )
+
+FileType( 'Elan EEG', 'SEEG recording', 'Elan EEG format' )
+FileType( 'Trigger', 'Any Type', 'Elan trigger format' )
+
+FileType( 'JP Localizer', 'Any Type', 'JP Localizer format' )
+FileType( 'JP image', 'Any Type', 'JPEG image' )
+FileType( 'BrainTV Film', 'Any Type', 'AVI film' )
+
+# Micro Electrode Recordings*
+FileType( 'MER Experiment', 'Directory', 'Directory' )
+FileType( 'Raw MER recording', 'Any Type', 'Blackrock MER format' )
+
+# Eye movements
+FileType( 'Eye Tracking Experiment', 'Directory', 'Directory' )
+FileType( 'Raw Eye Tracking', 'Any Type', 'Eyelink format' )
+