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Make ZipperBams hanlde program name collisions #1006

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bwlang opened this issue Jul 31, 2024 · 1 comment
Open

Make ZipperBams hanlde program name collisions #1006

bwlang opened this issue Jul 31, 2024 · 1 comment
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enhancement help wanted

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@bwlang
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bwlang commented Jul 31, 2024 •
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I had to add --no-PG to my ubam generation code to avoid name collisions.
to reproduce create a ubam with samtools cat and samtool collate.
then use samtools collate to product the aligned bam.
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bwlang commented Aug 1, 2024

here is the specific error:
java.lang.IllegalArgumentException: Program record with group id samtools already exists in SAMFileHeader!

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