Change Log

All notable changes to this project will be documented in this file. This project adheres to Semantic Versioning.

[v0.2.1] - 2015-08-14

Fixed

A significant bug in the project layout and setup.py meant that biobox_cli sub modules, the assets directory and the verification directory were included in the .tar.gz released file, but not installed. This was fixed by moving all files under the biobox_cli directory, and specifying their inclusion using find_packages() and package_data in the setup.py configuration file.

v0.2.0 - 2015-08-12

Added

Flag specify a task --task when using a short read assembler biobox. This runs different combinations of parameters according to their specification in each biobox Taskfile.
Ability to specify a task to use when verifying a short read assembler biobox. This is passed using the --task flag to biobox verify.
Short read assembler verification now checks that the file log.txt is created when a directory that is mounted to /bbx/metadata.

Changed

Updated README.md with more explicit instructions on how to submit pull requests.

Fixed

Bug where bundled files could not be found if install in separate directories

v0.1.0 - 2015-08-10

Added

Added ability to verify a biobox. This is called via the biobox verify command. This tests the image with the cucumber files in the verification directory and returns a pass fail message.

Changed

Now provides git-like syntax where commands are available as biobox run or biobox verify. This compares previously where the first command argument was the biobox type.
Error messages moved outside the python code and instead stored in a yaml file. This allows error messages to instead be called by name from the code.

Fixed

More verbose error messages. The user now gets clearer error messages when the biobox is not available or the command is called incorrectly.