mkdocs.yml

site_name: Beacon v2 Documentation
site_description: 'Read the Docs Documentation for Beacon v2'
#site_author: 'Manuel Rueda, PhD'
copyright: '© Copyright 2021-2022, Beacon v2 Documentation Contributors'
repo_name: 'beacon-schema-2'

extra_css: [css/theme_overrides.css]

markdown_extensions:
  - admonition
  - attr_list
  - footnotes

nav:
    - Introduction to Beacon v2: index.md
    - Roles of Documentation Consumers: 
        - At a glance: roles.md
    - Beacon Flavours: beacon-flavours.md
    - Beacon Queries:
        - Query URL Examples: rest-api.md
    - Implement & Deploy a Beacon:
        - Deployment Options: implement-and-deploy.md
        - Beacon Reference Implementation: "https://b2ri-documentation.readthedocs.io/en/latest/"
        - Framework: framework.md         
        - Models: models.md
        - Filters: filters.md
        - Genomic Queries: variant-queries.md
    - Schemas:
        - Analyses: schemas-md/analyses_defaultSchema.md
        - Biosamples: schemas-md/biosamples_defaultSchema.md
        - Cohorts: schemas-md/cohorts_defaultSchema.md
        - Datasets: schemas-md/datasets_defaultSchema.md
        - Genomic Variations: schemas-md/genomicVariations_defaultSchema.md
        - Individuals: schemas-md/individuals_defaultSchema.md
        - Runs: schemas-md/runs_defaultSchema.md
    - Beacon Terms:
        - Terms List: schemas-md/beacon_terms.md
    - External Links:
        - Beacon Project: http://beacon-project.io
        - Github Repositories: https://github.com/ga4gh-beacon/


theme: readthedocs

# Options
extra:
  logo: 'img/GA-logo.png'