Add tests to ensure API can recreate source BAM/SAM/CRAM/VCF

[diekhans]

This appears not to be the case:
ga4gh/ga4gh-server#758

[macieksmuga]

Not sure this is a compliance suite issue, but rather an issue with the API proper (as defined in the schemas repo), as per the above-mentioned discussion in the server repo.

[diekhans]

This is an compliance suite issue, in the sense that we should
test that be can to get back the data you put in. However is
current impossible to code this test.

There are a number of subtle issues that need to be understood
and addressed, such a `placed' reads. The compliance suite can
be one force in resolving these issues.

Maciek Smuga-Otto [email protected] writes:

Not sure this issue is a compliance suite issue, but rather an issue with the
API proper (as defined in the schemas repo), as per the above-mentioned
discussion in the server repo.

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[david4096]

Is there somewhere I can read more about this?

[diekhans]

ga4gh/ga4gh-schemas#505

Although it might be necessary to define exactly what `round
trip' means which certain types of data.

David Steinberg [email protected] writes:

Is there somewhere I can read more about this?

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