From b3a32e1ccc6a0f21432476734d5de170fb020291 Mon Sep 17 00:00:00 2001 From: Ben Hutton Date: Tue, 2 Jun 2015 11:18:21 +0100 Subject: [PATCH] Revert "Fixed issue with test data start and end position as per https://github.com/MatchmakerExchange/mme-apis/pull/110#issuecomment-106281020" This reverts commit 95a7cec51b24440dde1534d0eab1dc338381d5b6. Reason: https://github.com/MatchmakerExchange/mme-apis/pull/110#issuecomment-107730326 --- testing/benchmark_patients.json | 138 ++++++++++++++++---------------- 1 file changed, 69 insertions(+), 69 deletions(-) diff --git a/testing/benchmark_patients.json b/testing/benchmark_patients.json index 94946be..5154d7c 100644 --- a/testing/benchmark_patients.json +++ b/testing/benchmark_patients.json @@ -87,7 +87,7 @@ "end": 42929131, "referenceBases": "G", "referenceName": "17", - "start": 42929131 + "start": 42929130 }, "zygosity": 1 } @@ -188,7 +188,7 @@ "end": 74058108, "referenceBases": "A", "referenceName": "2", - "start": 74058108 + "start": 74058107 }, "zygosity": 1 }, @@ -206,7 +206,7 @@ "end": 74074670, "referenceBases": "C", "referenceName": "2", - "start": 74074670 + "start": 74074669 }, "zygosity": 1 } @@ -299,7 +299,7 @@ "end": 118860954, "referenceBases": "T", "referenceName": "5", - "start": 118860954 + "start": 118860953 }, "zygosity": 1 }, @@ -317,7 +317,7 @@ "end": 118792052, "referenceBases": "C", "referenceName": "5", - "start": 118792052 + "start": 118792051 }, "zygosity": 1 } @@ -370,7 +370,7 @@ "end": 7050691, "referenceBases": "A", "referenceName": "18", - "start": 7050691 + "start": 7050690 }, "zygosity": 2 } @@ -427,7 +427,7 @@ "end": 128412081, "referenceBases": "G", "referenceName": "2", - "start": 128412081 + "start": 128412080 }, "zygosity": 1 }, @@ -445,7 +445,7 @@ "end": 128412067, "referenceBases": "G", "referenceName": "2", - "start": 128412067 + "start": 128412066 }, "zygosity": 1 }, @@ -463,7 +463,7 @@ "end": 128396914, "referenceBases": "A", "referenceName": "2", - "start": 128396914 + "start": 128396913 }, "zygosity": 1 } @@ -516,7 +516,7 @@ "end": 128412081, "referenceBases": "G", "referenceName": "2", - "start": 128412081 + "start": 128412080 }, "zygosity": 1 }, @@ -534,7 +534,7 @@ "end": 128412067, "referenceBases": "G", "referenceName": "2", - "start": 128412067 + "start": 128412066 }, "zygosity": 1 }, @@ -552,7 +552,7 @@ "end": 128396914, "referenceBases": "A", "referenceName": "2", - "start": 128396914 + "start": 128396913 }, "zygosity": 1 } @@ -597,7 +597,7 @@ "end": 14794076, "referenceBases": "C", "referenceName": "12", - "start": 14794076 + "start": 14794075 }, "zygosity": 2 } @@ -642,7 +642,7 @@ "end": 14794076, "referenceBases": "C", "referenceName": "12", - "start": 14794076 + "start": 14794075 }, "zygosity": 1 }, @@ -660,7 +660,7 @@ "end": 14772238, "referenceBases": "A", "referenceName": "12", - "start": 14772238 + "start": 14772237 }, "zygosity": 1 } @@ -737,7 +737,7 @@ "end": 75665092, "referenceBases": "G", "referenceName": "16", - "start": 75665092 + "start": 75665091 }, "zygosity": 1 }, @@ -755,7 +755,7 @@ "end": 75662589, "referenceBases": "C", "referenceName": "16", - "start": 75662589 + "start": 75662588 }, "zygosity": 1 } @@ -820,7 +820,7 @@ "end": 75665092, "referenceBases": "G", "referenceName": "16", - "start": 75665092 + "start": 75665091 }, "zygosity": 1 }, @@ -838,7 +838,7 @@ "end": 75662589, "referenceBases": "C", "referenceName": "16", - "start": 75662589 + "start": 75662588 }, "zygosity": 1 } @@ -903,7 +903,7 @@ "end": 34072338, "referenceBases": "G", "referenceName": "21", - "start": 34072338 + "start": 34072337 }, "zygosity": 2 } @@ -988,7 +988,7 @@ "end": 220316451, "referenceBases": "C", "referenceName": "1", - "start": 220316451 + "start": 220316450 }, "zygosity": 2 } @@ -1085,7 +1085,7 @@ "end": 6977723, "referenceBases": "C", "referenceName": "18", - "start": 6977723 + "start": 6977722 }, "zygosity": 1 }, @@ -1190,7 +1190,7 @@ "end": 7016493, "referenceBases": "GT", "referenceName": "18", - "start": 7016492 + "start": 7016491 }, "zygosity": 1 } @@ -1295,7 +1295,7 @@ "end": 6973132, "referenceBases": "AGGGG", "referenceName": "18", - "start": 6973128 + "start": 6973127 }, "zygosity": 1 }, @@ -1313,7 +1313,7 @@ "end": 6948556, "referenceBases": "C", "referenceName": "18", - "start": 6948556 + "start": 6948555 }, "zygosity": 1 }, @@ -1331,7 +1331,7 @@ "end": 7049076, "referenceBases": "C", "referenceName": "18", - "start": 7049076 + "start": 7049075 }, "zygosity": 1 } @@ -1408,7 +1408,7 @@ "end": 7016663, "referenceBases": "AAT", "referenceName": "18", - "start": 7016661 + "start": 7016660 }, "zygosity": 1 }, @@ -1426,7 +1426,7 @@ "end": 7050726, "referenceBases": "A", "referenceName": "18", - "start": 7050726 + "start": 7050725 }, "zygosity": 1 } @@ -1511,7 +1511,7 @@ "end": 7016663, "referenceBases": "AAT", "referenceName": "18", - "start": 7016661 + "start": 7016660 }, "zygosity": 1 }, @@ -1529,7 +1529,7 @@ "end": 7050726, "referenceBases": "A", "referenceName": "18", - "start": 7050726 + "start": 7050725 }, "zygosity": 1 } @@ -1574,7 +1574,7 @@ "end": 2447952, "referenceBases": "C", "referenceName": "20", - "start": 2447952 + "start": 2447951 }, "zygosity": 1 } @@ -1635,7 +1635,7 @@ "end": 2447952, "referenceBases": "C", "referenceName": "20", - "start": 2447952 + "start": 2447951 }, "zygosity": 1 } @@ -1708,7 +1708,7 @@ "end": 2447952, "referenceBases": "C", "referenceName": "20", - "start": 2447952 + "start": 2447951 }, "zygosity": 1 } @@ -1781,7 +1781,7 @@ "end": 2447847, "referenceBases": "G", "referenceName": "20", - "start": 2447847 + "start": 2447846 }, "zygosity": 1 } @@ -1854,7 +1854,7 @@ "end": 2451408, "referenceBases": "G", "referenceName": "20", - "start": 2451408 + "start": 2451407 }, "zygosity": 1 } @@ -1903,7 +1903,7 @@ "end": 2447952, "referenceBases": "C", "referenceName": "20", - "start": 2447952 + "start": 2447951 }, "zygosity": 1 } @@ -1964,7 +1964,7 @@ "end": 2447952, "referenceBases": "C", "referenceName": "20", - "start": 2447952 + "start": 2447951 }, "zygosity": 1 } @@ -2025,7 +2025,7 @@ "end": 2447953, "referenceBases": "C", "referenceName": "20", - "start": 2447953 + "start": 2447952 }, "zygosity": 1 } @@ -2094,7 +2094,7 @@ "end": 2447953, "referenceBases": "C", "referenceName": "20", - "start": 2447953 + "start": 2447952 }, "zygosity": 1 } @@ -2159,7 +2159,7 @@ "end": 2447952, "referenceBases": "C", "referenceName": "20", - "start": 2447952 + "start": 2447951 }, "zygosity": 1 } @@ -2232,7 +2232,7 @@ "end": 2447953, "referenceBases": "C", "referenceName": "20", - "start": 2447953 + "start": 2447952 }, "zygosity": 1 } @@ -2297,7 +2297,7 @@ "end": 2447846, "referenceBases": "G", "referenceName": "20", - "start": 2447846 + "start": 2447845 }, "zygosity": 1 } @@ -2374,7 +2374,7 @@ "end": 9862854, "referenceBases": "T", "referenceName": "16", - "start": 9862854 + "start": 9862853 }, "zygosity": 1 } @@ -2467,7 +2467,7 @@ "end": 1105813, "referenceBases": "G", "referenceName": "19", - "start": 1105813 + "start": 1105812 }, "zygosity": 1 }, @@ -2485,7 +2485,7 @@ "end": 1106237, "referenceBases": "CTTTTC", "referenceName": "19", - "start": 1106232 + "start": 1106231 }, "zygosity": 1 } @@ -2582,7 +2582,7 @@ "end": 1105455, "referenceBases": "C", "referenceName": "19", - "start": 1105455 + "start": 1105454 }, "zygosity": 2 } @@ -2643,7 +2643,7 @@ "end": 30671863, "referenceBases": "C", "referenceName": "7", - "start": 30671863 + "start": 30671862 }, "zygosity": 1 }, @@ -2661,7 +2661,7 @@ "end": 30668263, "referenceBases": "G", "referenceName": "7", - "start": 30668263 + "start": 30668262 }, "zygosity": 1 } @@ -2774,7 +2774,7 @@ "end": 25761027, "referenceBases": "TGGG", "referenceName": "3", - "start": 25761024 + "start": 25761023 }, "zygosity": 1 }, @@ -2792,7 +2792,7 @@ "end": 25775422, "referenceBases": "T", "referenceName": "3", - "start": 25775422 + "start": 25775421 }, "zygosity": 1 } @@ -2885,7 +2885,7 @@ "end": 25773869, "referenceBases": "TCCCCC", "referenceName": "3", - "start": 25773864 + "start": 25773863 }, "zygosity": 2 } @@ -3018,7 +3018,7 @@ "end": 25775422, "referenceBases": "T", "referenceName": "3", - "start": 25775422 + "start": 25775421 }, "zygosity": 2 } @@ -3159,7 +3159,7 @@ "end": 25775422, "referenceBases": "T", "referenceName": "3", - "start": 25775422 + "start": 25775421 }, "zygosity": 2 } @@ -3240,7 +3240,7 @@ "end": 25775422, "referenceBases": "T", "referenceName": "3", - "start": 25775422 + "start": 25775421 }, "zygosity": 2 } @@ -3357,7 +3357,7 @@ "end": 25775422, "referenceBases": "T", "referenceName": "3", - "start": 25775422 + "start": 25775421 }, "zygosity": 2 } @@ -3478,7 +3478,7 @@ "end": 25775422, "referenceBases": "T", "referenceName": "3", - "start": 25775422 + "start": 25775421 }, "zygosity": 2 } @@ -3531,7 +3531,7 @@ "end": 36579992, "referenceBases": "CTTT", "referenceName": "19", - "start": 36579989 + "start": 36579988 }, "zygosity": 2 } @@ -3608,7 +3608,7 @@ "end": 42474427, "referenceBases": "C", "referenceName": "19", - "start": 42474427 + "start": 42474426 }, "zygosity": 1 } @@ -3753,7 +3753,7 @@ "end": 2160552, "referenceBases": "G", "referenceName": "1", - "start": 2160552 + "start": 2160551 }, "zygosity": 1 } @@ -3886,7 +3886,7 @@ "end": 74538114, "referenceBases": "A", "referenceName": "14", - "start": 74538114 + "start": 74538113 }, "zygosity": 1 }, @@ -3904,7 +3904,7 @@ "end": 74527350, "referenceBases": "G", "referenceName": "14", - "start": 74527350 + "start": 74527349 }, "zygosity": 1 } @@ -3973,7 +3973,7 @@ "end": 67592090, "referenceBases": "A", "referenceName": "5", - "start": 67592090 + "start": 67592089 }, "zygosity": 1 } @@ -4074,7 +4074,7 @@ "end": 3075805, "referenceBases": "G", "referenceName": "16", - "start": 3075805 + "start": 3075804 }, "zygosity": 2 } @@ -4151,7 +4151,7 @@ "end": 42153199, "referenceBases": "C", "referenceName": "17", - "start": 42153199 + "start": 42153198 }, "zygosity": 2 } @@ -4200,7 +4200,7 @@ "end": 47221659, "referenceBases": "TAAGT", "referenceName": "2", - "start": 47221655 + "start": 47221654 }, "zygosity": 2 } @@ -4249,7 +4249,7 @@ "end": 20225453, "referenceBases": "T", "referenceName": "3", - "start": 20225453 + "start": 20225452 }, "zygosity": 2 } @@ -4370,7 +4370,7 @@ "end": 25775418, "referenceBases": "GTTC", "referenceName": "3", - "start": 25775415 + "start": 25775414 }, "zygosity": 1 }, @@ -4388,7 +4388,7 @@ "end": 25761670, "referenceBases": "G", "referenceName": "3", - "start": 25761670 + "start": 25761669 }, "zygosity": 1 } @@ -4397,4 +4397,4 @@ "label": "162_3-test", "test": true } -] \ No newline at end of file +]