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Increase memory allocation for CONVERTER_gff_to_interval_index_0 #783

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jennaj opened this issue Jul 24, 2024 · 0 comments
Open

Increase memory allocation for CONVERTER_gff_to_interval_index_0 #783

jennaj opened this issue Jul 24, 2024 · 0 comments
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site/org usegalaxy.org tools/resources Memory allocation for tool(s)

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@jennaj
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jennaj commented Jul 24, 2024

tool_id CONVERTER_gff_to_interval_index_0

Convert GFF to Interval Index needs more memory to process human sized genomes.
Currently at default. --mem=2765
500k line GTF = processes ok
1.9M lines = fails .. and some versions can be 4.5M lines

Workaround for end-users

  • Expand the red error dataset. If you see a message about memory usage, you are impacted.
  • The solution for now is to try at another server: UseGalaxy.eu or UseGalaxy.org.au
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site/org usegalaxy.org tools/resources Memory allocation for tool(s)
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