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Thanks for your great work !!
I have encountered a small undesirable behavior in --generate_db_and_cov mode in PrediXcan.r.
When SNPs of eff_allele column in weight file are all "T", it seems to be recognized as logical "TRUE" instead of character. It ends up with characters "TRUE" in eff_allele column in .db file.
I guess that this problem could occur with JTI because JTI tends to use fewer SNPs than PrediXcan for prediction.
Best regards,
Takahiro
The text was updated successfully, but these errors were encountered:
Thanks for your great work !!
I have encountered a small undesirable behavior in --generate_db_and_cov mode in PrediXcan.r.
When SNPs of eff_allele column in weight file are all "T", it seems to be recognized as logical "TRUE" instead of character. It ends up with characters "TRUE" in eff_allele column in .db file.
I guess that this problem could occur with JTI because JTI tends to use fewer SNPs than PrediXcan for prediction.
Best regards,
Takahiro
The text was updated successfully, but these errors were encountered: