ci.yaml

name: ReSDK CI

on:
  push:
    branches:
      - master
    tags:
      - "[0-9]+.[0-9]+.[0-9]+*"
  pull_request:
  workflow_dispatch:

jobs:
  unittest:
    runs-on: arc-runner
    env:
      TOX_COMMAND: "tox --skip-missing-interpreters false"

    strategy:
      fail-fast: false
      matrix:
        toxenv: [py38, py39, py310, py311, py312, docs, linters, package]

    steps:
      - name: Checkout
        uses: actions/checkout@v4

      - name: Assert PR is up-to-date
        if: github.event_name == 'pull_request'
        run: |
          git fetch origin ${{ github.base_ref }}
          git fetch origin HEAD --unshallow
          git_change_target_merge_base=$(git merge-base HEAD origin/${{ github.base_ref }})
          git_change_target_sha=$(git rev-parse origin/${{ github.base_ref }})

          if [[ "${git_change_target_merge_base}" != "${git_change_target_sha}" ]]; then
            echo 'Pull request is not up-to-date!'
            echo "Please, rebase your pull request on top of '${{ github.base_ref }}' (commit: ${git_change_target_sha})."
            exit 1
          fi

      - name: Run Tests
        run: >
          ${{ env.TOX_COMMAND }} -e ${{ matrix.toxenv }}

  e2e:
    runs-on: arc-runner
    needs: unittest
    env:
      GENESIS_POSTGRESQL_NAME: genialis-base
      GENESIS_POSTGRESQL_USER: genialis-base
      GENESIS_POSTGRESQL_PASSWORD: genialis-base
      GENESIS_POSTGRESQL_PORT: 55434
      GENESIS_REDIS_PORT: 56381
      GENESIS_RESDK_PATH: ".."
      GENESIS_REST_THROTTLING: '{"login": "100000/hour", "credentials": "100000/hour", "email": "100000/hour"}'

    services:
      postgres:
        image: public.ecr.aws/docker/library/postgres:14
        env:
          POSTGRES_USER: genialis-base
          POSTGRES_DB: genialis-base
          POSTGRES_PASSWORD: genialis-base
        ports:
          - 55434:5432
        options: >-
          --health-cmd pg_isready
          --health-interval 10s
          --health-timeout 5s
          --health-retries 5

      redis:
        image: public.ecr.aws/docker/library/redis:7-alpine
        ports:
          - 56381:6379
        options: >-
          --health-cmd "redis-cli ping"
          --health-interval 10s
          --health-timeout 5s
          --health-retries 5

    steps:
      - name: Checkout resolwe-bio-py
        uses: actions/checkout@v4

      - name: Checkout genialis-base
        uses: actions/checkout@v4
        with:
          repository: genialis/genialis-base
          path: genialis-base
          ssh-key: ${{ secrets.GHA_SSH_PRIVATE_KEY_GENIALIS_DEPLOY }}

      - name: Run tests
        run: |
          cd genialis-base

          # Prepare frontend configuration
          mkdir -p frontend/genjs/schema
          echo '{}' > frontend/genjs/schema/configuration.json

          # Make sure `python` refers to the tox environment's Python
          export PATH=`pwd`/.tox/py310-e2e-resdk/bin:$PATH

          tox --skip-missing-interpreters false -e py310-e2e-resdk

  build:
    runs-on: arc-runner
    needs: [unittest, e2e]
    if: startsWith(github.ref, 'refs/tags')
    env:
      PYTHON: "python3.12"
    steps:
      - uses: actions/checkout@v4

      - name: Install build
        run: ${{ env.PYTHON }} -m pip install --user build

      - name: Build a binary wheel and a source tarball
        run: ${{ env.PYTHON }} -m build --sdist --wheel --outdir dist/ .

      - name: Upload coverage to Codecov
        uses: codecov/codecov-action@v1
        with:
          file: .coverage

      - name: Publish distribution to PyPI
        uses: pypa/gh-action-pypi-publish@release/v1.8
        with:
          password: ${{ secrets.pypi_password }}