diff --git a/ww-star-deseq2.wdl b/ww-star-deseq2.wdl index 9b61019..79b9f5b 100755 --- a/ww-star-deseq2.wdl +++ b/ww-star-deseq2.wdl @@ -177,10 +177,8 @@ task RNASeQC { } command <<< - java -Xmx4g -jar /usr/rnaseqc/RNA-SeQC.jar -n 1000 \ - "~{refGtf}" "~{bam_file}" OUTPUT \ - --sample="~{base_file_name}" \ - --coverage + rnaseqc.v2.4.2.linux "~{refGtf}" "~{bam_file}" OUTPUT \ + --sample="~{base_file_name}" --coverage tar -cvzf "~{base_file_name}.QC.tar.gz" OUTPUT/* >>>