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Copy pathAll_mehg_sim_netto_prodotto.R
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All_mehg_sim_netto_prodotto.R
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setwd('C:/Users/gi/Desktop/nuoveMEt3/add_sim1')#Fminmin
met<-read.csv('Bacterial_Methylation_Rate.csv', header=FALSE, skip = 1,sep = ",", dec=".")
names(met)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2");
met<-met[3:2414,1:13]
demet<-read.csv('Bacterial_Demethylation_Rate.csv', header=FALSE, skip = 1,sep = ",", dec=".")
names(demet)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2");
demet<-demet[3:2414,1:13]
mehg<-read.csv("Dissolved_Methyl_Hg.csv", header=FALSE, skip = 1,sep = ",", dec=".")
names(mehg)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2");
mehg<-mehg[3:2414,1:13]
DOCmehg<-read.csv("DOC_Sorbed_Methyl_Hg.csv", header=FALSE, skip = 1,sep = ",", dec=".")
names(DOCmehg)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2"); DOCmehg<-
DOCmehg<- DOCmehg[3:2414,1:13]
hg0<-read.csv("Elemental_Hg.csv", header=FALSE, skip = 1,sep = ",", dec=".")
names(hg0)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2");
hg0<-hg0[3:2414,1:13]
DOChg<-read.csv("DOC_Sorbed_Divalent_Hg.csv", header=FALSE, skip =1, sep = ",", dec=".")
names(DOChg)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2"); DOChg<-DOChg[3:2414,1:13]
hg<-read.csv("Dissolved_Divalent_Hg.csv", skip = 1,header=FALSE, sep = ",", dec=".")
names(hg)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2"); hg<-hg[3:2414,1:13]
hgT<-read.csv("Divalent_Hg.csv", skip = 1,header=FALSE, sep = ",", dec=".")
names(hgT)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2"); hgT<-hgT[3:2414,1:13]
mehgT<-read.csv("Methyl_Hg.csv", skip = 1,header=FALSE, sep = ",", dec=".")
names(mehgT)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2"); mehgT<-mehgT[3:2414,1:13]
OL1_vol_m3 <-5.9E+12; OL1_vol_L <-OL1_vol_m3*1000
CIL_vol_m3 <-4.5E+12; CIL_vol_L <-CIL_vol_m3*1000
oxy_vol_m3 <-5.9E+12; oxy_vol_L <-oxy_vol_m3*1000
SOL_vol_m3 <-7.4E+12; SOL_vol_L <-SOL_vol_m3*1000
UAL1_vol_m3 <-5.3E+13; UAL1_vol_L <-UAL1_vol_m3*1000
DAOL_vol_m3 <-2.9E+14; DAOL_vol_L <-DAOL_vol_m3*1000
BBL_vol_m3 <-1E+14; BBL_vol_L <-BBL_vol_m3*1000
Sed1_vol<-8.8*10^9
Sed2_vol<-2*10^10
diss_mehg<-DOCmehg+mehg; str(diss_mehg)
diss_hgII<-hg+DOChg; str(diss_hgII)
diss_mehg_pM<-(diss_mehg/215)*1000
diss_hgII_pM<-(diss_hgII/200.59)*1000
diss_hgt<-(diss_mehg_pM+diss_hgII_pM)
mehgT_pM <-(mehgT/215)*1000
hgT_pM <-(hgT/200.59)*1000
#-------conc diss hg
diss_hgII_pmol_OL1 <-diss_hgII_pM$Oxic1*OL1_vol_L
diss_hgII_pmol_OL2 <-diss_hgII_pM$Oxic2*OL1_vol_L
diss_hgII_pmol_CIL <-diss_hgII_pM$CIL*CIL_vol_L
diss_hgII_pmol_oxy <-diss_hgII_pM$Oxycline*oxy_vol_L
diss_hgII_pmol_SOL <-diss_hgII_pM$Suboxic1*SOL_vol_L
diss_hgII_pmol_UAL1 <-diss_hgII_pM$Suboxic2*UAL1_vol_L
diss_hgII_pmol_UAL2 <-diss_hgII_pM$Anoxic1 *UAL1_vol_L
diss_hgII_pmol_DAOL <-diss_hgII_pM$Anoxic2 *DAOL_vol_L
diss_hgII_pmol_BBL <-diss_hgII_pM$Anoxic3 *BBL_vol_L;
# ------ end
#----------------------------------------conc hgT
hgT_pmol_OL1 <-hgT_pM$Oxic1 *OL1_vol_L
hgT_pmol_OL2 <-hgT_pM$Oxic2 *OL1_vol_L
hgT_pmol_CIL <-hgT_pM$CIL *CIL_vol_L
hgT_pmol_oxy <-hgT_pM$Oxycline*oxy_vol_L
hgT_pmol_SOL <-hgT_pM$Suboxic1*SOL_vol_L
hgT_pmol_UAL1 <-hgT_pM$Suboxic2*UAL1_vol_L
hgT_pmol_UAL2 <-hgT_pM$Anoxic1 *UAL1_vol_L
hgT_pmol_DAOL <-hgT_pM$Anoxic2 *DAOL_vol_L
hgT_pmol_BBL <-hgT_pM$Anoxic3 *BBL_vol_L;
hgT_pmol_sed1 <-hgT_pM$Sed1 *Sed1_vol;
hgT_pmol_sed2 <-hgT_pM$Sed2 *Sed2_vol;
# ------ end
# ------ METHYLATION IN EACH ZONE
met_pmol_day_oxic <-(hgT_pmol_OL1*met$Oxic1)+(hgT_pmol_OL2*met$Oxic2)+(hgT_pmol_CIL*met$CIL)+(hgT_pmol_oxy*met$Oxycline)
met_pmol_day_suboxic <-(hgT_pmol_SOL*met$Suboxic1)
met_pmol_day_anoxic <-(hgT_pmol_UAL1*met$Suboxic2)+(hgT_pmol_UAL2*met$Anoxic1)+
(hgT_pmol_DAOL*met$Anoxic2) + (hgT_pmol_BBL*met$Anoxic3)
met_pmol_day_sed <-(hgT_pmol_sed1*met$Sed1)+(hgT_pmol_sed2*met$Sed2)
#----------------------------------------conc mehgT
mehgT_pmol_OL1 <-mehgT_pM$Oxic1 *OL1_vol_L
mehgT_pmol_OL2 <-mehgT_pM$Oxic2 *OL1_vol_L
mehgT_pmol_CIL <-mehgT_pM$CIL *CIL_vol_L
mehgT_pmol_oxy <-mehgT_pM$Oxycline*oxy_vol_L
mehgT_pmol_SOL <-mehgT_pM$Suboxic1*SOL_vol_L
mehgT_pmol_UAL1 <-mehgT_pM$Suboxic2*UAL1_vol_L
mehgT_pmol_UAL2 <-mehgT_pM$Anoxic1 *UAL1_vol_L
mehgT_pmol_DAOL <-mehgT_pM$Anoxic2 *DAOL_vol_L
mehgT_pmol_BBL <-mehgT_pM$Anoxic3 *BBL_vol_L;
mehgT_pmol_sed1 <-mehgT_pM$Sed1 *Sed1_vol;
mehgT_pmol_sed2 <-mehgT_pM$Sed2 *Sed2_vol;
# ------ DEMETHYLATION IN EACH ZONE
demet_pmol_day_oxic <-(mehgT_pmol_OL1 *demet$Oxic1) +(mehgT_pmol_OL2*demet$Oxic2)+
(mehgT_pmol_CIL *demet$CIL) +(mehgT_pmol_oxy*demet$Oxycline)
demet_pmol_day_suboxic <-(mehgT_pmol_SOL *demet$Suboxic1)
demet_pmol_day_anoxic <-(mehgT_pmol_UAL1*demet$Suboxic2)+(mehgT_pmol_UAL2*demet$Anoxic1)+
(mehgT_pmol_DAOL*demet$Anoxic2) +(mehgT_pmol_BBL*demet$Anoxic3)
demet_pmol_day_sed <-(mehgT_pmol_sed1*demet$Sed1)+(mehgT_pmol_sed2*met$Sed2)
met_kmol_y_OL <-met_pmol_day_oxic*365/10^15; mean(tail(met_kmol_y_OL,12)) # 27 kmol
met_kmol_y_SOL <-met_pmol_day_suboxic*365/10^15; mean(tail(met_kmol_y_SOL,12)) # 6.7 kmol
met_kmol_y_AOL <-met_pmol_day_anoxic*365/10^15; mean(tail(met_kmol_y_AOL,12)) # 206 kmol
met_kmol_y_SED <-met_pmol_day_sed*365/10^15; mean(tail(met_kmol_y_SED,12)) # 206 kmol
demet_kmol_y_OL <-demet_pmol_day_oxic*365/10^15; mean(tail(demet_kmol_y_OL,12)) # 27.8 kmol
demet_kmol_y_SOL <-demet_pmol_day_suboxic*365/10^15; mean(tail(demet_kmol_y_SOL,12)) # 10 kmol
demet_kmol_y_AOL <-demet_pmol_day_anoxic*365/10^15; mean(tail(demet_kmol_y_AOL,12))# 198 kmol
demet_kmol_y_SED <-demet_pmol_day_sed*365/10^15; mean(tail(demet_kmol_y_SED,12)) # 206 kmol
met_kmol_y<-data.frame(met_kmol_y_OL, met_kmol_y_SOL, met_kmol_y_AOL,met_kmol_y_SED)
demet_kmol_y<-data.frame(demet_kmol_y_OL, demet_kmol_y_SOL, demet_kmol_y_AOL,demet_kmol_y_SED)
trasf<-cbind(met_kmol_y,demet_kmol_y); str(trasf)
write.csv(trasf, file='trasformazioni.csv')
netto_prodotto_long<-met_kmol_y-demet_kmol_y
netto_prodotto_TOT_long<-rowSums(netto_prodotto_long)
metilato <-rowSums(met_kmol_y)
demetilato <-rowSums(demet_kmol_y)
mean(tail(metilato,36))
mean(tail(demetilato,36))
str(met_kmol_y_OL)
mean(tail(met_kmol_y_OL,12))/mean(tail(metilato,12))*100
mean(tail(met_kmol_y_SOL,12))/mean(tail(metilato,12))*100
mean(tail(met_kmol_y_AOL,12))/mean(tail(metilato,12))*100
mean(tail(demet_kmol_y_OL,12))/mean(tail(demetilato,12))*100
mean(tail(demet_kmol_y_SOL,12))/mean(tail(demetilato,12))*100
mean(tail(demet_kmol_y_AOL,12))/mean(tail(demetilato,12))*100
write.csv(netto_prodotto_long, file='mehg_prodotto_kmol_y_2050.csv')
write.csv(demetilato, file='demetilato.csv')
write.csv(metilato, file='metilato.csv')
head(netto_prodotto_long,30)
head(metilato,15)
head(demetilato,15)
met_kmol_y_media <-as.numeric(lapply(met_kmol_y ,rep(1:(length(met_kmol_y)/12),each=12), mean))
OL_demet_kmol_y_media <-as.numeric(tapply(demet_kmol_y[,1] ,rep(1:(length(demet_kmol_y[,1])/12), each = 12), mean))
SOL_demet_kmol_y_media <-as.numeric(tapply(demet_kmol_y[,2] ,rep(1:(length(demet_kmol_y[,2])/12), each = 12), mean))
AOL_demet_kmol_y_media <-as.numeric(tapply(demet_kmol_y[,3] ,rep(1:(length(demet_kmol_y[,3])/12), each = 12), mean))
SED_demet_kmol_y_media <-as.numeric(tapply(demet_kmol_y[,4] ,rep(1:(length(demet_kmol_y[,4])/12), each = 12), mean))
OL_met_kmol_y_media <-as.numeric(tapply(met_kmol_y[,1] ,rep(1:(length(demet_kmol_y[,1])/12), each = 12), mean))
SOL_met_kmol_y_media <-as.numeric(tapply(met_kmol_y[,2] ,rep(1:(length(demet_kmol_y[,2])/12), each = 12), mean))
AOL_met_kmol_y_media <-as.numeric(tapply(met_kmol_y[,3] ,rep(1:(length(demet_kmol_y[,3])/12), each = 12), mean))
SED_met_kmol_y_media <-as.numeric(tapply(met_kmol_y[,4] ,rep(1:(length(met_kmol_y[,4])/12), each = 12), mean))
SED_demet_kmol_y_media[164]
SED_met_kmol_y_media[164]
OL_met_kmol_y_media[164]
met_kmol_y<-data.frame(OL_met_kmol_y_media, SOL_met_kmol_y_media, AOL_met_kmol_y_media)
demet_kmol_y<-data.frame(OL_demet_kmol_y_media, SOL_demet_kmol_y_media, AOL_demet_kmol_y_media)
met_kmol_y[164,]
demet_kmol_y[164,]
netto_prodotto_OL <-(OL_met_kmol_y_media - OL_demet_kmol_y_media)
netto_prodotto_SOL <-(SOL_met_kmol_y_media- SOL_demet_kmol_y_media)
netto_prodotto_AOL <-(AOL_met_kmol_y_media- AOL_demet_kmol_y_media)
netto_prodotto_SED <-(SED_met_kmol_y_media- SED_demet_kmol_y_media)
netto<-netto_prodotto_OL+netto_prodotto_SOL+netto_prodotto_AOL; mean(tail(netto,12))
netto_prodotto<-data.frame(netto_prodotto_OL,netto_prodotto_SOL,
netto_prodotto_AOL, netto)
write.csv(netto_prodotto, file='netto_prodotto_kmol_y_2050.csv')
write.table(netto, file='netto_TOT_2050.txt')
write.csv(netto_prodotto_TOT_long,file='netto_prodotto_long_2050.csv')
plot(netto_prodotto_OL);abline(h=2.9)
plot(netto_prodotto_SOL);abline(h=2.9)
plot(netto_prodotto_AOL);abline(h=2.9)
plot(netto);abline(h=2.9)
setwd('C:/Users/gi/Desktop/nuoveMEt3/add_sim2')#Fminmin
met<-read.csv('Bacterial_Methylation_Rate.csv', header=FALSE, skip = 1,sep = ",", dec=".")
names(met)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2");
met<-met[3:2414,1:13]
demet<-read.csv('Bacterial_Demethylation_Rate.csv', header=FALSE, skip = 1,sep = ",", dec=".")
names(demet)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2");
demet<-demet[3:2414,1:13]
mehg<-read.csv("Dissolved_Methyl_Hg.csv", header=FALSE, skip = 1,sep = ",", dec=".")
names(mehg)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2");
mehg<-mehg[3:2414,1:13]
DOCmehg<-read.csv("DOC_Sorbed_Methyl_Hg.csv", header=FALSE, skip = 1,sep = ",", dec=".")
names(DOCmehg)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2"); DOCmehg<-
DOCmehg<- DOCmehg[3:2414,1:13]
hg0<-read.csv("Elemental_Hg.csv", header=FALSE, skip = 1,sep = ",", dec=".")
names(hg0)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2");
hg0<-hg0[3:2414,1:13]
DOChg<-read.csv("DOC_Sorbed_Divalent_Hg.csv", header=FALSE, skip =1, sep = ",", dec=".")
names(DOChg)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2"); DOChg<-DOChg[3:2414,1:13]
hg<-read.csv("Dissolved_Divalent_Hg.csv", skip = 1,header=FALSE, sep = ",", dec=".")
names(hg)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2"); hg<-hg[3:2414,1:13]
hgT<-read.csv("Divalent_Hg.csv", skip = 1,header=FALSE, sep = ",", dec=".")
names(hgT)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2"); hgT<-hgT[3:2414,1:13]
mehgT<-read.csv("Methyl_Hg.csv", skip = 1,header=FALSE, sep = ",", dec=".")
names(mehgT)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2"); mehgT<-mehgT[3:2414,1:13]
OL1_vol_m3 <-5.9E+12; OL1_vol_L <-OL1_vol_m3*1000
CIL_vol_m3 <-4.5E+12; CIL_vol_L <-CIL_vol_m3*1000
oxy_vol_m3 <-5.9E+12; oxy_vol_L <-oxy_vol_m3*1000
SOL_vol_m3 <-7.4E+12; SOL_vol_L <-SOL_vol_m3*1000
UAL1_vol_m3 <-5.3E+13; UAL1_vol_L <-UAL1_vol_m3*1000
DAOL_vol_m3 <-2.9E+14; DAOL_vol_L <-DAOL_vol_m3*1000
BBL_vol_m3 <-1E+14; BBL_vol_L <-BBL_vol_m3*1000
Sed1_vol<-8.8*10^9
Sed2_vol<-2*10^10
diss_mehg<-DOCmehg+mehg; str(diss_mehg)
diss_hgII<-hg+DOChg; str(diss_hgII)
diss_mehg_pM<-(diss_mehg/215)*1000
diss_hgII_pM<-(diss_hgII/200.59)*1000
diss_hgt<-(diss_mehg_pM+diss_hgII_pM)
mehgT_pM <-(mehgT/215)*1000
hgT_pM <-(hgT/200.59)*1000
#-------conc diss hg
diss_hgII_pmol_OL1 <-diss_hgII_pM$Oxic1*OL1_vol_L
diss_hgII_pmol_OL2 <-diss_hgII_pM$Oxic2*OL1_vol_L
diss_hgII_pmol_CIL <-diss_hgII_pM$CIL*CIL_vol_L
diss_hgII_pmol_oxy <-diss_hgII_pM$Oxycline*oxy_vol_L
diss_hgII_pmol_SOL <-diss_hgII_pM$Suboxic1*SOL_vol_L
diss_hgII_pmol_UAL1 <-diss_hgII_pM$Suboxic2*UAL1_vol_L
diss_hgII_pmol_UAL2 <-diss_hgII_pM$Anoxic1 *UAL1_vol_L
diss_hgII_pmol_DAOL <-diss_hgII_pM$Anoxic2 *DAOL_vol_L
diss_hgII_pmol_BBL <-diss_hgII_pM$Anoxic3 *BBL_vol_L;
# ------ end
#----------------------------------------conc hgT
hgT_pmol_OL1 <-hgT_pM$Oxic1 *OL1_vol_L
hgT_pmol_OL2 <-hgT_pM$Oxic2 *OL1_vol_L
hgT_pmol_CIL <-hgT_pM$CIL *CIL_vol_L
hgT_pmol_oxy <-hgT_pM$Oxycline*oxy_vol_L
hgT_pmol_SOL <-hgT_pM$Suboxic1*SOL_vol_L
hgT_pmol_UAL1 <-hgT_pM$Suboxic2*UAL1_vol_L
hgT_pmol_UAL2 <-hgT_pM$Anoxic1 *UAL1_vol_L
hgT_pmol_DAOL <-hgT_pM$Anoxic2 *DAOL_vol_L
hgT_pmol_BBL <-hgT_pM$Anoxic3 *BBL_vol_L;
hgT_pmol_sed1 <-hgT_pM$Sed1 *Sed1_vol;
hgT_pmol_sed2 <-hgT_pM$Sed2 *Sed2_vol;
# ------ end
# ------ METHYLATION IN EACH ZONE
met_pmol_day_oxic <-(hgT_pmol_OL1*met$Oxic1)+(hgT_pmol_OL2*met$Oxic2)+(hgT_pmol_CIL*met$CIL)+(hgT_pmol_oxy*met$Oxycline)
met_pmol_day_suboxic <-(hgT_pmol_SOL*met$Suboxic1)
met_pmol_day_anoxic <-(hgT_pmol_UAL1*met$Suboxic2)+(hgT_pmol_UAL2*met$Anoxic1)+
(hgT_pmol_DAOL*met$Anoxic2) + (hgT_pmol_BBL*met$Anoxic3)
met_pmol_day_sed <-(hgT_pmol_sed1*met$Sed1)+(hgT_pmol_sed2*met$Sed2)
#----------------------------------------conc mehgT
mehgT_pmol_OL1 <-mehgT_pM$Oxic1 *OL1_vol_L
mehgT_pmol_OL2 <-mehgT_pM$Oxic2 *OL1_vol_L
mehgT_pmol_CIL <-mehgT_pM$CIL *CIL_vol_L
mehgT_pmol_oxy <-mehgT_pM$Oxycline*oxy_vol_L
mehgT_pmol_SOL <-mehgT_pM$Suboxic1*SOL_vol_L
mehgT_pmol_UAL1 <-mehgT_pM$Suboxic2*UAL1_vol_L
mehgT_pmol_UAL2 <-mehgT_pM$Anoxic1 *UAL1_vol_L
mehgT_pmol_DAOL <-mehgT_pM$Anoxic2 *DAOL_vol_L
mehgT_pmol_BBL <-mehgT_pM$Anoxic3 *BBL_vol_L;
mehgT_pmol_sed1 <-mehgT_pM$Sed1 *Sed1_vol;
mehgT_pmol_sed2 <-mehgT_pM$Sed2 *Sed2_vol;
# ------ DEMETHYLATION IN EACH ZONE
demet_pmol_day_oxic <-(mehgT_pmol_OL1 *demet$Oxic1) +(mehgT_pmol_OL2*demet$Oxic2)+
(mehgT_pmol_CIL *demet$CIL) +(mehgT_pmol_oxy*demet$Oxycline)
demet_pmol_day_suboxic <-(mehgT_pmol_SOL *demet$Suboxic1)
demet_pmol_day_anoxic <-(mehgT_pmol_UAL1*demet$Suboxic2)+(mehgT_pmol_UAL2*demet$Anoxic1)+
(mehgT_pmol_DAOL*demet$Anoxic2) +(mehgT_pmol_BBL*demet$Anoxic3)
demet_pmol_day_sed <-(mehgT_pmol_sed1*demet$Sed1)+(mehgT_pmol_sed2*met$Sed2)
met_kmol_y_OL <-met_pmol_day_oxic*365/10^15; mean(tail(met_kmol_y_OL,12)) # 27 kmol
met_kmol_y_SOL <-met_pmol_day_suboxic*365/10^15; mean(tail(met_kmol_y_SOL,12)) # 6.7 kmol
met_kmol_y_AOL <-met_pmol_day_anoxic*365/10^15; mean(tail(met_kmol_y_AOL,12)) # 206 kmol
met_kmol_y_SED <-met_pmol_day_sed*365/10^15; mean(tail(met_kmol_y_SED,12)) # 206 kmol
demet_kmol_y_OL <-demet_pmol_day_oxic*365/10^15; mean(tail(demet_kmol_y_OL,12)) # 27.8 kmol
demet_kmol_y_SOL <-demet_pmol_day_suboxic*365/10^15; mean(tail(demet_kmol_y_SOL,12)) # 10 kmol
demet_kmol_y_AOL <-demet_pmol_day_anoxic*365/10^15; mean(tail(demet_kmol_y_AOL,12))# 198 kmol
demet_kmol_y_SED <-demet_pmol_day_sed*365/10^15; mean(tail(demet_kmol_y_SED,12)) # 206 kmol
met_kmol_y<-data.frame(met_kmol_y_OL, met_kmol_y_SOL, met_kmol_y_AOL,met_kmol_y_SED)
demet_kmol_y<-data.frame(demet_kmol_y_OL, demet_kmol_y_SOL, demet_kmol_y_AOL,demet_kmol_y_SED)
trasf<-cbind(met_kmol_y,demet_kmol_y); str(trasf)
write.csv(trasf, file='trasformazioni.csv')
netto_prodotto_long<-met_kmol_y-demet_kmol_y
netto_prodotto_TOT_long<-rowSums(netto_prodotto_long)
metilato <-rowSums(met_kmol_y)
demetilato <-rowSums(demet_kmol_y)
mean(tail(metilato,36))
mean(tail(demetilato,36))
str(met_kmol_y_OL)
mean(tail(met_kmol_y_OL,12))/mean(tail(metilato,12))*100
mean(tail(met_kmol_y_SOL,12))/mean(tail(metilato,12))*100
mean(tail(met_kmol_y_AOL,12))/mean(tail(metilato,12))*100
mean(tail(demet_kmol_y_OL,12))/mean(tail(demetilato,12))*100
mean(tail(demet_kmol_y_SOL,12))/mean(tail(demetilato,12))*100
mean(tail(demet_kmol_y_AOL,12))/mean(tail(demetilato,12))*100
write.csv(netto_prodotto_long, file='mehg_prodotto_kmol_y_2050.csv')
write.csv(demetilato, file='demetilato.csv')
write.csv(metilato, file='metilato.csv')
head(netto_prodotto_long,30)
head(metilato,15)
head(demetilato,15)
met_kmol_y_media <-as.numeric(lapply(met_kmol_y ,rep(1:(length(met_kmol_y)/12),each=12), mean))
OL_demet_kmol_y_media <-as.numeric(tapply(demet_kmol_y[,1] ,rep(1:(length(demet_kmol_y[,1])/12), each = 12), mean))
SOL_demet_kmol_y_media <-as.numeric(tapply(demet_kmol_y[,2] ,rep(1:(length(demet_kmol_y[,2])/12), each = 12), mean))
AOL_demet_kmol_y_media <-as.numeric(tapply(demet_kmol_y[,3] ,rep(1:(length(demet_kmol_y[,3])/12), each = 12), mean))
SED_demet_kmol_y_media <-as.numeric(tapply(demet_kmol_y[,4] ,rep(1:(length(demet_kmol_y[,4])/12), each = 12), mean))
OL_met_kmol_y_media <-as.numeric(tapply(met_kmol_y[,1] ,rep(1:(length(demet_kmol_y[,1])/12), each = 12), mean))
SOL_met_kmol_y_media <-as.numeric(tapply(met_kmol_y[,2] ,rep(1:(length(demet_kmol_y[,2])/12), each = 12), mean))
AOL_met_kmol_y_media <-as.numeric(tapply(met_kmol_y[,3] ,rep(1:(length(demet_kmol_y[,3])/12), each = 12), mean))
SED_met_kmol_y_media <-as.numeric(tapply(met_kmol_y[,4] ,rep(1:(length(met_kmol_y[,4])/12), each = 12), mean))
SED_demet_kmol_y_media[164]
SED_met_kmol_y_media[164]
OL_met_kmol_y_media[164]
met_kmol_y<-data.frame(OL_met_kmol_y_media, SOL_met_kmol_y_media, AOL_met_kmol_y_media)
demet_kmol_y<-data.frame(OL_demet_kmol_y_media, SOL_demet_kmol_y_media, AOL_demet_kmol_y_media)
met_kmol_y[164,]
demet_kmol_y[164,]
netto_prodotto_OL <-(OL_met_kmol_y_media - OL_demet_kmol_y_media)
netto_prodotto_SOL <-(SOL_met_kmol_y_media- SOL_demet_kmol_y_media)
netto_prodotto_AOL <-(AOL_met_kmol_y_media- AOL_demet_kmol_y_media)
netto_prodotto_SED <-(SED_met_kmol_y_media- SED_demet_kmol_y_media)
netto<-netto_prodotto_OL+netto_prodotto_SOL+netto_prodotto_AOL; mean(tail(netto,12))
netto_prodotto<-data.frame(netto_prodotto_OL,netto_prodotto_SOL,
netto_prodotto_AOL, netto)
write.csv(netto_prodotto, file='netto_prodotto_kmol_y_2050.csv')
write.table(netto, file='netto_TOT_2050.txt')
write.csv(netto_prodotto_TOT_long,file='netto_prodotto_long_2050.csv')
plot(netto_prodotto_OL);abline(h=2.9)
plot(netto_prodotto_SOL);abline(h=2.9)
plot(netto_prodotto_AOL);abline(h=2.9)
plot(netto);abline(h=2.9)
setwd('C:/Users/gi/Desktop/nuoveMEt3/add_sim3')#Fminmin
met<-read.csv('Bacterial_Methylation_Rate.csv', header=FALSE, skip = 1,sep = ",", dec=".")
names(met)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2");
met<-met[3:2414,1:13]
demet<-read.csv('Bacterial_Demethylation_Rate.csv', header=FALSE, skip = 1,sep = ",", dec=".")
names(demet)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2");
demet<-demet[3:2414,1:13]
mehg<-read.csv("Dissolved_Methyl_Hg.csv", header=FALSE, skip = 1,sep = ",", dec=".")
names(mehg)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2");
mehg<-mehg[3:2414,1:13]
DOCmehg<-read.csv("DOC_Sorbed_Methyl_Hg.csv", header=FALSE, skip = 1,sep = ",", dec=".")
names(DOCmehg)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2"); DOCmehg<-
DOCmehg<- DOCmehg[3:2414,1:13]
hg0<-read.csv("Elemental_Hg.csv", header=FALSE, skip = 1,sep = ",", dec=".")
names(hg0)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2");
hg0<-hg0[3:2414,1:13]
DOChg<-read.csv("DOC_Sorbed_Divalent_Hg.csv", header=FALSE, skip =1, sep = ",", dec=".")
names(DOChg)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2"); DOChg<-DOChg[3:2414,1:13]
hg<-read.csv("Dissolved_Divalent_Hg.csv", skip = 1,header=FALSE, sep = ",", dec=".")
names(hg)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2"); hg<-hg[3:2414,1:13]
hgT<-read.csv("Divalent_Hg.csv", skip = 1,header=FALSE, sep = ",", dec=".")
names(hgT)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2"); hgT<-hgT[3:2414,1:13]
mehgT<-read.csv("Methyl_Hg.csv", skip = 1,header=FALSE, sep = ",", dec=".")
names(mehgT)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2"); mehgT<-mehgT[3:2414,1:13]
OL1_vol_m3 <-5.9E+12; OL1_vol_L <-OL1_vol_m3*1000
CIL_vol_m3 <-4.5E+12; CIL_vol_L <-CIL_vol_m3*1000
oxy_vol_m3 <-5.9E+12; oxy_vol_L <-oxy_vol_m3*1000
SOL_vol_m3 <-7.4E+12; SOL_vol_L <-SOL_vol_m3*1000
UAL1_vol_m3 <-5.3E+13; UAL1_vol_L <-UAL1_vol_m3*1000
DAOL_vol_m3 <-2.9E+14; DAOL_vol_L <-DAOL_vol_m3*1000
BBL_vol_m3 <-1E+14; BBL_vol_L <-BBL_vol_m3*1000
Sed1_vol<-8.8*10^9
Sed2_vol<-2*10^10
diss_mehg<-DOCmehg+mehg; str(diss_mehg)
diss_hgII<-hg+DOChg; str(diss_hgII)
diss_mehg_pM<-(diss_mehg/215)*1000
diss_hgII_pM<-(diss_hgII/200.59)*1000
diss_hgt<-(diss_mehg_pM+diss_hgII_pM)
mehgT_pM <-(mehgT/215)*1000
hgT_pM <-(hgT/200.59)*1000
#-------conc diss hg
diss_hgII_pmol_OL1 <-diss_hgII_pM$Oxic1*OL1_vol_L
diss_hgII_pmol_OL2 <-diss_hgII_pM$Oxic2*OL1_vol_L
diss_hgII_pmol_CIL <-diss_hgII_pM$CIL*CIL_vol_L
diss_hgII_pmol_oxy <-diss_hgII_pM$Oxycline*oxy_vol_L
diss_hgII_pmol_SOL <-diss_hgII_pM$Suboxic1*SOL_vol_L
diss_hgII_pmol_UAL1 <-diss_hgII_pM$Suboxic2*UAL1_vol_L
diss_hgII_pmol_UAL2 <-diss_hgII_pM$Anoxic1 *UAL1_vol_L
diss_hgII_pmol_DAOL <-diss_hgII_pM$Anoxic2 *DAOL_vol_L
diss_hgII_pmol_BBL <-diss_hgII_pM$Anoxic3 *BBL_vol_L;
# ------ end
#----------------------------------------conc hgT
hgT_pmol_OL1 <-hgT_pM$Oxic1 *OL1_vol_L
hgT_pmol_OL2 <-hgT_pM$Oxic2 *OL1_vol_L
hgT_pmol_CIL <-hgT_pM$CIL *CIL_vol_L
hgT_pmol_oxy <-hgT_pM$Oxycline*oxy_vol_L
hgT_pmol_SOL <-hgT_pM$Suboxic1*SOL_vol_L
hgT_pmol_UAL1 <-hgT_pM$Suboxic2*UAL1_vol_L
hgT_pmol_UAL2 <-hgT_pM$Anoxic1 *UAL1_vol_L
hgT_pmol_DAOL <-hgT_pM$Anoxic2 *DAOL_vol_L
hgT_pmol_BBL <-hgT_pM$Anoxic3 *BBL_vol_L;
hgT_pmol_sed1 <-hgT_pM$Sed1 *Sed1_vol;
hgT_pmol_sed2 <-hgT_pM$Sed2 *Sed2_vol;
# ------ end
# ------ METHYLATION IN EACH ZONE
met_pmol_day_oxic <-(hgT_pmol_OL1*met$Oxic1)+(hgT_pmol_OL2*met$Oxic2)+(hgT_pmol_CIL*met$CIL)+(hgT_pmol_oxy*met$Oxycline)
met_pmol_day_suboxic <-(hgT_pmol_SOL*met$Suboxic1)
met_pmol_day_anoxic <-(hgT_pmol_UAL1*met$Suboxic2)+(hgT_pmol_UAL2*met$Anoxic1)+
(hgT_pmol_DAOL*met$Anoxic2) + (hgT_pmol_BBL*met$Anoxic3)
met_pmol_day_sed <-(hgT_pmol_sed1*met$Sed1)+(hgT_pmol_sed2*met$Sed2)
#----------------------------------------conc mehgT
mehgT_pmol_OL1 <-mehgT_pM$Oxic1 *OL1_vol_L
mehgT_pmol_OL2 <-mehgT_pM$Oxic2 *OL1_vol_L
mehgT_pmol_CIL <-mehgT_pM$CIL *CIL_vol_L
mehgT_pmol_oxy <-mehgT_pM$Oxycline*oxy_vol_L
mehgT_pmol_SOL <-mehgT_pM$Suboxic1*SOL_vol_L
mehgT_pmol_UAL1 <-mehgT_pM$Suboxic2*UAL1_vol_L
mehgT_pmol_UAL2 <-mehgT_pM$Anoxic1 *UAL1_vol_L
mehgT_pmol_DAOL <-mehgT_pM$Anoxic2 *DAOL_vol_L
mehgT_pmol_BBL <-mehgT_pM$Anoxic3 *BBL_vol_L;
mehgT_pmol_sed1 <-mehgT_pM$Sed1 *Sed1_vol;
mehgT_pmol_sed2 <-mehgT_pM$Sed2 *Sed2_vol;
# ------ DEMETHYLATION IN EACH ZONE
demet_pmol_day_oxic <-(mehgT_pmol_OL1 *demet$Oxic1) +(mehgT_pmol_OL2*demet$Oxic2)+
(mehgT_pmol_CIL *demet$CIL) +(mehgT_pmol_oxy*demet$Oxycline)
demet_pmol_day_suboxic <-(mehgT_pmol_SOL *demet$Suboxic1)
demet_pmol_day_anoxic <-(mehgT_pmol_UAL1*demet$Suboxic2)+(mehgT_pmol_UAL2*demet$Anoxic1)+
(mehgT_pmol_DAOL*demet$Anoxic2) +(mehgT_pmol_BBL*demet$Anoxic3)
demet_pmol_day_sed <-(mehgT_pmol_sed1*demet$Sed1)+(mehgT_pmol_sed2*met$Sed2)
met_kmol_y_OL <-met_pmol_day_oxic*365/10^15; mean(tail(met_kmol_y_OL,12)) # 27 kmol
met_kmol_y_SOL <-met_pmol_day_suboxic*365/10^15; mean(tail(met_kmol_y_SOL,12)) # 6.7 kmol
met_kmol_y_AOL <-met_pmol_day_anoxic*365/10^15; mean(tail(met_kmol_y_AOL,12)) # 206 kmol
met_kmol_y_SED <-met_pmol_day_sed*365/10^15; mean(tail(met_kmol_y_SED,12)) # 206 kmol
demet_kmol_y_OL <-demet_pmol_day_oxic*365/10^15; mean(tail(demet_kmol_y_OL,12)) # 27.8 kmol
demet_kmol_y_SOL <-demet_pmol_day_suboxic*365/10^15; mean(tail(demet_kmol_y_SOL,12)) # 10 kmol
demet_kmol_y_AOL <-demet_pmol_day_anoxic*365/10^15; mean(tail(demet_kmol_y_AOL,12))# 198 kmol
demet_kmol_y_SED <-demet_pmol_day_sed*365/10^15; mean(tail(demet_kmol_y_SED,12)) # 206 kmol
met_kmol_y<-data.frame(met_kmol_y_OL, met_kmol_y_SOL, met_kmol_y_AOL,met_kmol_y_SED)
demet_kmol_y<-data.frame(demet_kmol_y_OL, demet_kmol_y_SOL, demet_kmol_y_AOL,demet_kmol_y_SED)
trasf<-cbind(met_kmol_y,demet_kmol_y); str(trasf)
write.csv(trasf, file='trasformazioni.csv')
netto_prodotto_long<-met_kmol_y-demet_kmol_y
netto_prodotto_TOT_long<-rowSums(netto_prodotto_long)
metilato <-rowSums(met_kmol_y)
demetilato <-rowSums(demet_kmol_y)
mean(tail(metilato,36))
mean(tail(demetilato,36))
str(met_kmol_y_OL)
mean(tail(met_kmol_y_OL,12))/mean(tail(metilato,12))*100
mean(tail(met_kmol_y_SOL,12))/mean(tail(metilato,12))*100
mean(tail(met_kmol_y_AOL,12))/mean(tail(metilato,12))*100
mean(tail(demet_kmol_y_OL,12))/mean(tail(demetilato,12))*100
mean(tail(demet_kmol_y_SOL,12))/mean(tail(demetilato,12))*100
mean(tail(demet_kmol_y_AOL,12))/mean(tail(demetilato,12))*100
write.csv(netto_prodotto_long, file='mehg_prodotto_kmol_y_2050.csv')
write.csv(demetilato, file='demetilato.csv')
write.csv(metilato, file='metilato.csv')
head(netto_prodotto_long,30)
head(metilato,15)
head(demetilato,15)
met_kmol_y_media <-as.numeric(lapply(met_kmol_y ,rep(1:(length(met_kmol_y)/12),each=12), mean))
OL_demet_kmol_y_media <-as.numeric(tapply(demet_kmol_y[,1] ,rep(1:(length(demet_kmol_y[,1])/12), each = 12), mean))
SOL_demet_kmol_y_media <-as.numeric(tapply(demet_kmol_y[,2] ,rep(1:(length(demet_kmol_y[,2])/12), each = 12), mean))
AOL_demet_kmol_y_media <-as.numeric(tapply(demet_kmol_y[,3] ,rep(1:(length(demet_kmol_y[,3])/12), each = 12), mean))
SED_demet_kmol_y_media <-as.numeric(tapply(demet_kmol_y[,4] ,rep(1:(length(demet_kmol_y[,4])/12), each = 12), mean))
OL_met_kmol_y_media <-as.numeric(tapply(met_kmol_y[,1] ,rep(1:(length(demet_kmol_y[,1])/12), each = 12), mean))
SOL_met_kmol_y_media <-as.numeric(tapply(met_kmol_y[,2] ,rep(1:(length(demet_kmol_y[,2])/12), each = 12), mean))
AOL_met_kmol_y_media <-as.numeric(tapply(met_kmol_y[,3] ,rep(1:(length(demet_kmol_y[,3])/12), each = 12), mean))
SED_met_kmol_y_media <-as.numeric(tapply(met_kmol_y[,4] ,rep(1:(length(met_kmol_y[,4])/12), each = 12), mean))
SED_demet_kmol_y_media[164]
SED_met_kmol_y_media[164]
OL_met_kmol_y_media[164]
met_kmol_y<-data.frame(OL_met_kmol_y_media, SOL_met_kmol_y_media, AOL_met_kmol_y_media)
demet_kmol_y<-data.frame(OL_demet_kmol_y_media, SOL_demet_kmol_y_media, AOL_demet_kmol_y_media)
met_kmol_y[164,]
demet_kmol_y[164,]
netto_prodotto_OL <-(OL_met_kmol_y_media - OL_demet_kmol_y_media)
netto_prodotto_SOL <-(SOL_met_kmol_y_media- SOL_demet_kmol_y_media)
netto_prodotto_AOL <-(AOL_met_kmol_y_media- AOL_demet_kmol_y_media)
netto_prodotto_SED <-(SED_met_kmol_y_media- SED_demet_kmol_y_media)
netto<-netto_prodotto_OL+netto_prodotto_SOL+netto_prodotto_AOL; mean(tail(netto,12))
netto_prodotto<-data.frame(netto_prodotto_OL,netto_prodotto_SOL,
netto_prodotto_AOL, netto)
write.csv(netto_prodotto, file='netto_prodotto_kmol_y_2050.csv')
write.table(netto, file='netto_TOT_2050.txt')
write.csv(netto_prodotto_TOT_long,file='netto_prodotto_long_2050.csv')
plot(netto_prodotto_OL);abline(h=2.9)
plot(netto_prodotto_SOL);abline(h=2.9)
plot(netto_prodotto_AOL);abline(h=2.9)
plot(netto);abline(h=2.9)
setwd('C:/Users/gi/Desktop/nuoveMEt3/Fosfati/F6')#Fminmin
met<-read.csv('Bacterial_Methylation_Rate.csv', header=FALSE, skip = 1,sep = ",", dec=".")
names(met)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2");
met<-met[3:2414,1:13]
demet<-read.csv('Bacterial_Demethylation_Rate.csv', header=FALSE, skip = 1,sep = ",", dec=".")
names(demet)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2");
demet<-demet[3:2414,1:13]
mehg<-read.csv("Dissolved_Methyl_Hg.csv", header=FALSE, skip = 1,sep = ",", dec=".")
names(mehg)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2");
mehg<-mehg[3:2414,1:13]
DOCmehg<-read.csv("DOC_Sorbed_Methyl_Hg.csv", header=FALSE, skip = 1,sep = ",", dec=".")
names(DOCmehg)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2"); DOCmehg<-
DOCmehg<- DOCmehg[3:2414,1:13]
hg0<-read.csv("Elemental_Hg.csv", header=FALSE, skip = 1,sep = ",", dec=".")
names(hg0)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2");
hg0<-hg0[3:2414,1:13]
DOChg<-read.csv("DOC_Sorbed_Divalent_Hg.csv", header=FALSE, skip =1, sep = ",", dec=".")
names(DOChg)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2"); DOChg<-DOChg[3:2414,1:13]
hg<-read.csv("Dissolved_Divalent_Hg.csv", skip = 1,header=FALSE, sep = ",", dec=".")
names(hg)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2"); hg<-hg[3:2414,1:13]
hgT<-read.csv("Divalent_Hg.csv", skip = 1,header=FALSE, sep = ",", dec=".")
names(hgT)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2"); hgT<-hgT[3:2414,1:13]
mehgT<-read.csv("Methyl_Hg.csv", skip = 1,header=FALSE, sep = ",", dec=".")
names(mehgT)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2"); mehgT<-mehgT[3:2414,1:13]
OL1_vol_m3 <-5.9E+12; OL1_vol_L <-OL1_vol_m3*1000
CIL_vol_m3 <-4.5E+12; CIL_vol_L <-CIL_vol_m3*1000
oxy_vol_m3 <-5.9E+12; oxy_vol_L <-oxy_vol_m3*1000
SOL_vol_m3 <-7.4E+12; SOL_vol_L <-SOL_vol_m3*1000
UAL1_vol_m3 <-5.3E+13; UAL1_vol_L <-UAL1_vol_m3*1000
DAOL_vol_m3 <-2.9E+14; DAOL_vol_L <-DAOL_vol_m3*1000
BBL_vol_m3 <-1E+14; BBL_vol_L <-BBL_vol_m3*1000
Sed1_vol<-8.8*10^9
Sed2_vol<-2*10^10
diss_mehg<-DOCmehg+mehg; str(diss_mehg)
diss_hgII<-hg+DOChg; str(diss_hgII)
diss_mehg_pM<-(diss_mehg/215)*1000
diss_hgII_pM<-(diss_hgII/200.59)*1000
diss_hgt<-(diss_mehg_pM+diss_hgII_pM)
mehgT_pM <-(mehgT/215)*1000
hgT_pM <-(hgT/200.59)*1000
#-------conc diss hg
diss_hgII_pmol_OL1 <-diss_hgII_pM$Oxic1*OL1_vol_L
diss_hgII_pmol_OL2 <-diss_hgII_pM$Oxic2*OL1_vol_L
diss_hgII_pmol_CIL <-diss_hgII_pM$CIL*CIL_vol_L
diss_hgII_pmol_oxy <-diss_hgII_pM$Oxycline*oxy_vol_L
diss_hgII_pmol_SOL <-diss_hgII_pM$Suboxic1*SOL_vol_L
diss_hgII_pmol_UAL1 <-diss_hgII_pM$Suboxic2*UAL1_vol_L
diss_hgII_pmol_UAL2 <-diss_hgII_pM$Anoxic1 *UAL1_vol_L
diss_hgII_pmol_DAOL <-diss_hgII_pM$Anoxic2 *DAOL_vol_L
diss_hgII_pmol_BBL <-diss_hgII_pM$Anoxic3 *BBL_vol_L;
# ------ end
#----------------------------------------conc hgT
hgT_pmol_OL1 <-hgT_pM$Oxic1 *OL1_vol_L
hgT_pmol_OL2 <-hgT_pM$Oxic2 *OL1_vol_L
hgT_pmol_CIL <-hgT_pM$CIL *CIL_vol_L
hgT_pmol_oxy <-hgT_pM$Oxycline*oxy_vol_L
hgT_pmol_SOL <-hgT_pM$Suboxic1*SOL_vol_L
hgT_pmol_UAL1 <-hgT_pM$Suboxic2*UAL1_vol_L
hgT_pmol_UAL2 <-hgT_pM$Anoxic1 *UAL1_vol_L
hgT_pmol_DAOL <-hgT_pM$Anoxic2 *DAOL_vol_L
hgT_pmol_BBL <-hgT_pM$Anoxic3 *BBL_vol_L;
hgT_pmol_sed1 <-hgT_pM$Sed1 *Sed1_vol;
hgT_pmol_sed2 <-hgT_pM$Sed2 *Sed2_vol;
# ------ end
# ------ METHYLATION IN EACH ZONE
met_pmol_day_oxic <-(hgT_pmol_OL1*met$Oxic1)+(hgT_pmol_OL2*met$Oxic2)+(hgT_pmol_CIL*met$CIL)+(hgT_pmol_oxy*met$Oxycline)
met_pmol_day_suboxic <-(hgT_pmol_SOL*met$Suboxic1)
met_pmol_day_anoxic <-(hgT_pmol_UAL1*met$Suboxic2)+(hgT_pmol_UAL2*met$Anoxic1)+
(hgT_pmol_DAOL*met$Anoxic2) + (hgT_pmol_BBL*met$Anoxic3)
met_pmol_day_sed <-(hgT_pmol_sed1*met$Sed1)+(hgT_pmol_sed2*met$Sed2)
#----------------------------------------conc mehgT
mehgT_pmol_OL1 <-mehgT_pM$Oxic1 *OL1_vol_L
mehgT_pmol_OL2 <-mehgT_pM$Oxic2 *OL1_vol_L
mehgT_pmol_CIL <-mehgT_pM$CIL *CIL_vol_L
mehgT_pmol_oxy <-mehgT_pM$Oxycline*oxy_vol_L
mehgT_pmol_SOL <-mehgT_pM$Suboxic1*SOL_vol_L
mehgT_pmol_UAL1 <-mehgT_pM$Suboxic2*UAL1_vol_L
mehgT_pmol_UAL2 <-mehgT_pM$Anoxic1 *UAL1_vol_L
mehgT_pmol_DAOL <-mehgT_pM$Anoxic2 *DAOL_vol_L
mehgT_pmol_BBL <-mehgT_pM$Anoxic3 *BBL_vol_L;
mehgT_pmol_sed1 <-mehgT_pM$Sed1 *Sed1_vol;
mehgT_pmol_sed2 <-mehgT_pM$Sed2 *Sed2_vol;
# ------ DEMETHYLATION IN EACH ZONE
demet_pmol_day_oxic <-(mehgT_pmol_OL1 *demet$Oxic1) +(mehgT_pmol_OL2*demet$Oxic2)+
(mehgT_pmol_CIL *demet$CIL) +(mehgT_pmol_oxy*demet$Oxycline)
demet_pmol_day_suboxic <-(mehgT_pmol_SOL *demet$Suboxic1)
demet_pmol_day_anoxic <-(mehgT_pmol_UAL1*demet$Suboxic2)+(mehgT_pmol_UAL2*demet$Anoxic1)+
(mehgT_pmol_DAOL*demet$Anoxic2) +(mehgT_pmol_BBL*demet$Anoxic3)
demet_pmol_day_sed <-(mehgT_pmol_sed1*demet$Sed1)+(mehgT_pmol_sed2*met$Sed2)
met_kmol_y_OL <-met_pmol_day_oxic*365/10^15; mean(tail(met_kmol_y_OL,12)) # 27 kmol
met_kmol_y_SOL <-met_pmol_day_suboxic*365/10^15; mean(tail(met_kmol_y_SOL,12)) # 6.7 kmol
met_kmol_y_AOL <-met_pmol_day_anoxic*365/10^15; mean(tail(met_kmol_y_AOL,12)) # 206 kmol
met_kmol_y_SED <-met_pmol_day_sed*365/10^15; mean(tail(met_kmol_y_SED,12)) # 206 kmol
demet_kmol_y_OL <-demet_pmol_day_oxic*365/10^15; mean(tail(demet_kmol_y_OL,12)) # 27.8 kmol
demet_kmol_y_SOL <-demet_pmol_day_suboxic*365/10^15; mean(tail(demet_kmol_y_SOL,12)) # 10 kmol
demet_kmol_y_AOL <-demet_pmol_day_anoxic*365/10^15; mean(tail(demet_kmol_y_AOL,12))# 198 kmol
demet_kmol_y_SED <-demet_pmol_day_sed*365/10^15; mean(tail(demet_kmol_y_SED,12)) # 206 kmol
met_kmol_y<-data.frame(met_kmol_y_OL, met_kmol_y_SOL, met_kmol_y_AOL,met_kmol_y_SED)
demet_kmol_y<-data.frame(demet_kmol_y_OL, demet_kmol_y_SOL, demet_kmol_y_AOL,demet_kmol_y_SED)
trasf<-cbind(met_kmol_y,demet_kmol_y); str(trasf)
write.csv(trasf, file='trasformazioni.csv')
netto_prodotto_long<-met_kmol_y-demet_kmol_y
netto_prodotto_TOT_long<-rowSums(netto_prodotto_long)
metilato <-rowSums(met_kmol_y)
demetilato <-rowSums(demet_kmol_y)
mean(tail(metilato,36))
mean(tail(demetilato,36))
str(met_kmol_y_OL)
mean(tail(met_kmol_y_OL,12))/mean(tail(metilato,12))*100
mean(tail(met_kmol_y_SOL,12))/mean(tail(metilato,12))*100
mean(tail(met_kmol_y_AOL,12))/mean(tail(metilato,12))*100
mean(tail(demet_kmol_y_OL,12))/mean(tail(demetilato,12))*100
mean(tail(demet_kmol_y_SOL,12))/mean(tail(demetilato,12))*100
mean(tail(demet_kmol_y_AOL,12))/mean(tail(demetilato,12))*100
write.csv(netto_prodotto_long, file='mehg_prodotto_kmol_y_2050.csv')
write.csv(demetilato, file='demetilato.csv')
write.csv(metilato, file='metilato.csv')
head(netto_prodotto_long,30)
head(metilato,15)
head(demetilato,15)
met_kmol_y_media <-as.numeric(lapply(met_kmol_y ,rep(1:(length(met_kmol_y)/12),each=12), mean))
OL_demet_kmol_y_media <-as.numeric(tapply(demet_kmol_y[,1] ,rep(1:(length(demet_kmol_y[,1])/12), each = 12), mean))
SOL_demet_kmol_y_media <-as.numeric(tapply(demet_kmol_y[,2] ,rep(1:(length(demet_kmol_y[,2])/12), each = 12), mean))
AOL_demet_kmol_y_media <-as.numeric(tapply(demet_kmol_y[,3] ,rep(1:(length(demet_kmol_y[,3])/12), each = 12), mean))
SED_demet_kmol_y_media <-as.numeric(tapply(demet_kmol_y[,4] ,rep(1:(length(demet_kmol_y[,4])/12), each = 12), mean))
OL_met_kmol_y_media <-as.numeric(tapply(met_kmol_y[,1] ,rep(1:(length(demet_kmol_y[,1])/12), each = 12), mean))
SOL_met_kmol_y_media <-as.numeric(tapply(met_kmol_y[,2] ,rep(1:(length(demet_kmol_y[,2])/12), each = 12), mean))
AOL_met_kmol_y_media <-as.numeric(tapply(met_kmol_y[,3] ,rep(1:(length(demet_kmol_y[,3])/12), each = 12), mean))
SED_met_kmol_y_media <-as.numeric(tapply(met_kmol_y[,4] ,rep(1:(length(met_kmol_y[,4])/12), each = 12), mean))
SED_demet_kmol_y_media[164]
SED_met_kmol_y_media[164]
OL_met_kmol_y_media[164]
met_kmol_y<-data.frame(OL_met_kmol_y_media, SOL_met_kmol_y_media, AOL_met_kmol_y_media)
demet_kmol_y<-data.frame(OL_demet_kmol_y_media, SOL_demet_kmol_y_media, AOL_demet_kmol_y_media)
met_kmol_y[164,]
demet_kmol_y[164,]
netto_prodotto_OL <-(OL_met_kmol_y_media - OL_demet_kmol_y_media)
netto_prodotto_SOL <-(SOL_met_kmol_y_media- SOL_demet_kmol_y_media)
netto_prodotto_AOL <-(AOL_met_kmol_y_media- AOL_demet_kmol_y_media)
netto_prodotto_SED <-(SED_met_kmol_y_media- SED_demet_kmol_y_media)
netto<-netto_prodotto_OL+netto_prodotto_SOL+netto_prodotto_AOL; mean(tail(netto,12))
netto_prodotto<-data.frame(netto_prodotto_OL,netto_prodotto_SOL,
netto_prodotto_AOL, netto)
write.csv(netto_prodotto, file='netto_prodotto_kmol_y_2050.csv')
write.table(netto, file='netto_TOT_2050.txt')
write.csv(netto_prodotto_TOT_long,file='netto_prodotto_long_2050.csv')
plot(netto_prodotto_OL);abline(h=2.9)
plot(netto_prodotto_SOL);abline(h=2.9)
plot(netto_prodotto_AOL);abline(h=2.9)
plot(netto);abline(h=2.9)
setwd('C:/Users/gi/Desktop/nuoveMEt3/Fosfati/F2')#Fminmin
met<-read.csv('Bacterial_Methylation_Rate.csv', header=FALSE, skip = 1,sep = ",", dec=".")
names(met)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2");
met<-met[3:2414,1:13]
demet<-read.csv('Bacterial_Demethylation_Rate.csv', header=FALSE, skip = 1,sep = ",", dec=".")
names(demet)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2");
demet<-demet[3:2414,1:13]
mehg<-read.csv("Dissolved_Methyl_Hg.csv", header=FALSE, skip = 1,sep = ",", dec=".")
names(mehg)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2");
mehg<-mehg[3:2414,1:13]
DOCmehg<-read.csv("DOC_Sorbed_Methyl_Hg.csv", header=FALSE, skip = 1,sep = ",", dec=".")
names(DOCmehg)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2"); DOCmehg<-
DOCmehg<- DOCmehg[3:2414,1:13]
hg0<-read.csv("Elemental_Hg.csv", header=FALSE, skip = 1,sep = ",", dec=".")
names(hg0)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2");
hg0<-hg0[3:2414,1:13]
DOChg<-read.csv("DOC_Sorbed_Divalent_Hg.csv", header=FALSE, skip =1, sep = ",", dec=".")
names(DOChg)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2"); DOChg<-DOChg[3:2414,1:13]
hg<-read.csv("Dissolved_Divalent_Hg.csv", skip = 1,header=FALSE, sep = ",", dec=".")
names(hg)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2"); hg<-hg[3:2414,1:13]
hgT<-read.csv("Divalent_Hg.csv", skip = 1,header=FALSE, sep = ",", dec=".")
names(hgT)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2"); hgT<-hgT[3:2414,1:13]
mehgT<-read.csv("Methyl_Hg.csv", skip = 1,header=FALSE, sep = ",", dec=".")
names(mehgT)<-c("Time", "Oxic1","Oxic2", "CIL", "Oxycline","Suboxic1", "Suboxic2",
"Anoxic1","Anoxic2","Anoxic3","Sed1","Sed2"); mehgT<-mehgT[3:2414,1:13]
OL1_vol_m3 <-5.9E+12; OL1_vol_L <-OL1_vol_m3*1000
CIL_vol_m3 <-4.5E+12; CIL_vol_L <-CIL_vol_m3*1000
oxy_vol_m3 <-5.9E+12; oxy_vol_L <-oxy_vol_m3*1000
SOL_vol_m3 <-7.4E+12; SOL_vol_L <-SOL_vol_m3*1000
UAL1_vol_m3 <-5.3E+13; UAL1_vol_L <-UAL1_vol_m3*1000
DAOL_vol_m3 <-2.9E+14; DAOL_vol_L <-DAOL_vol_m3*1000
BBL_vol_m3 <-1E+14; BBL_vol_L <-BBL_vol_m3*1000
Sed1_vol<-8.8*10^9
Sed2_vol<-2*10^10
diss_mehg<-DOCmehg+mehg; str(diss_mehg)
diss_hgII<-hg+DOChg; str(diss_hgII)
diss_mehg_pM<-(diss_mehg/215)*1000
diss_hgII_pM<-(diss_hgII/200.59)*1000
diss_hgt<-(diss_mehg_pM+diss_hgII_pM)
mehgT_pM <-(mehgT/215)*1000
hgT_pM <-(hgT/200.59)*1000
#-------conc diss hg
diss_hgII_pmol_OL1 <-diss_hgII_pM$Oxic1*OL1_vol_L
diss_hgII_pmol_OL2 <-diss_hgII_pM$Oxic2*OL1_vol_L
diss_hgII_pmol_CIL <-diss_hgII_pM$CIL*CIL_vol_L
diss_hgII_pmol_oxy <-diss_hgII_pM$Oxycline*oxy_vol_L
diss_hgII_pmol_SOL <-diss_hgII_pM$Suboxic1*SOL_vol_L
diss_hgII_pmol_UAL1 <-diss_hgII_pM$Suboxic2*UAL1_vol_L
diss_hgII_pmol_UAL2 <-diss_hgII_pM$Anoxic1 *UAL1_vol_L
diss_hgII_pmol_DAOL <-diss_hgII_pM$Anoxic2 *DAOL_vol_L
diss_hgII_pmol_BBL <-diss_hgII_pM$Anoxic3 *BBL_vol_L;
# ------ end
#----------------------------------------conc hgT
hgT_pmol_OL1 <-hgT_pM$Oxic1 *OL1_vol_L
hgT_pmol_OL2 <-hgT_pM$Oxic2 *OL1_vol_L
hgT_pmol_CIL <-hgT_pM$CIL *CIL_vol_L
hgT_pmol_oxy <-hgT_pM$Oxycline*oxy_vol_L
hgT_pmol_SOL <-hgT_pM$Suboxic1*SOL_vol_L
hgT_pmol_UAL1 <-hgT_pM$Suboxic2*UAL1_vol_L
hgT_pmol_UAL2 <-hgT_pM$Anoxic1 *UAL1_vol_L
hgT_pmol_DAOL <-hgT_pM$Anoxic2 *DAOL_vol_L
hgT_pmol_BBL <-hgT_pM$Anoxic3 *BBL_vol_L;
hgT_pmol_sed1 <-hgT_pM$Sed1 *Sed1_vol;
hgT_pmol_sed2 <-hgT_pM$Sed2 *Sed2_vol;
# ------ end
# ------ METHYLATION IN EACH ZONE
met_pmol_day_oxic <-(hgT_pmol_OL1*met$Oxic1)+(hgT_pmol_OL2*met$Oxic2)+(hgT_pmol_CIL*met$CIL)+(hgT_pmol_oxy*met$Oxycline)
met_pmol_day_suboxic <-(hgT_pmol_SOL*met$Suboxic1)
met_pmol_day_anoxic <-(hgT_pmol_UAL1*met$Suboxic2)+(hgT_pmol_UAL2*met$Anoxic1)+
(hgT_pmol_DAOL*met$Anoxic2) + (hgT_pmol_BBL*met$Anoxic3)
met_pmol_day_sed <-(hgT_pmol_sed1*met$Sed1)+(hgT_pmol_sed2*met$Sed2)
#----------------------------------------conc mehgT
mehgT_pmol_OL1 <-mehgT_pM$Oxic1 *OL1_vol_L
mehgT_pmol_OL2 <-mehgT_pM$Oxic2 *OL1_vol_L
mehgT_pmol_CIL <-mehgT_pM$CIL *CIL_vol_L
mehgT_pmol_oxy <-mehgT_pM$Oxycline*oxy_vol_L
mehgT_pmol_SOL <-mehgT_pM$Suboxic1*SOL_vol_L
mehgT_pmol_UAL1 <-mehgT_pM$Suboxic2*UAL1_vol_L
mehgT_pmol_UAL2 <-mehgT_pM$Anoxic1 *UAL1_vol_L
mehgT_pmol_DAOL <-mehgT_pM$Anoxic2 *DAOL_vol_L
mehgT_pmol_BBL <-mehgT_pM$Anoxic3 *BBL_vol_L;
mehgT_pmol_sed1 <-mehgT_pM$Sed1 *Sed1_vol;
mehgT_pmol_sed2 <-mehgT_pM$Sed2 *Sed2_vol;
# ------ DEMETHYLATION IN EACH ZONE
demet_pmol_day_oxic <-(mehgT_pmol_OL1 *demet$Oxic1) +(mehgT_pmol_OL2*demet$Oxic2)+
(mehgT_pmol_CIL *demet$CIL) +(mehgT_pmol_oxy*demet$Oxycline)
demet_pmol_day_suboxic <-(mehgT_pmol_SOL *demet$Suboxic1)
demet_pmol_day_anoxic <-(mehgT_pmol_UAL1*demet$Suboxic2)+(mehgT_pmol_UAL2*demet$Anoxic1)+
(mehgT_pmol_DAOL*demet$Anoxic2) +(mehgT_pmol_BBL*demet$Anoxic3)
demet_pmol_day_sed <-(mehgT_pmol_sed1*demet$Sed1)+(mehgT_pmol_sed2*met$Sed2)
met_kmol_y_OL <-met_pmol_day_oxic*365/10^15; mean(tail(met_kmol_y_OL,12)) # 27 kmol
met_kmol_y_SOL <-met_pmol_day_suboxic*365/10^15; mean(tail(met_kmol_y_SOL,12)) # 6.7 kmol
met_kmol_y_AOL <-met_pmol_day_anoxic*365/10^15; mean(tail(met_kmol_y_AOL,12)) # 206 kmol
met_kmol_y_SED <-met_pmol_day_sed*365/10^15; mean(tail(met_kmol_y_SED,12)) # 206 kmol
demet_kmol_y_OL <-demet_pmol_day_oxic*365/10^15; mean(tail(demet_kmol_y_OL,12)) # 27.8 kmol
demet_kmol_y_SOL <-demet_pmol_day_suboxic*365/10^15; mean(tail(demet_kmol_y_SOL,12)) # 10 kmol
demet_kmol_y_AOL <-demet_pmol_day_anoxic*365/10^15; mean(tail(demet_kmol_y_AOL,12))# 198 kmol
demet_kmol_y_SED <-demet_pmol_day_sed*365/10^15; mean(tail(demet_kmol_y_SED,12)) # 206 kmol
met_kmol_y<-data.frame(met_kmol_y_OL, met_kmol_y_SOL, met_kmol_y_AOL,met_kmol_y_SED)
demet_kmol_y<-data.frame(demet_kmol_y_OL, demet_kmol_y_SOL, demet_kmol_y_AOL,demet_kmol_y_SED)
trasf<-cbind(met_kmol_y,demet_kmol_y); str(trasf)
write.csv(trasf, file='trasformazioni.csv')
netto_prodotto_long<-met_kmol_y-demet_kmol_y
netto_prodotto_TOT_long<-rowSums(netto_prodotto_long)
metilato <-rowSums(met_kmol_y)
demetilato <-rowSums(demet_kmol_y)
mean(tail(metilato,36))
mean(tail(demetilato,36))
str(met_kmol_y_OL)
mean(tail(met_kmol_y_OL,12))/mean(tail(metilato,12))*100
mean(tail(met_kmol_y_SOL,12))/mean(tail(metilato,12))*100
mean(tail(met_kmol_y_AOL,12))/mean(tail(metilato,12))*100