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.gitmodules
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[submodule "tools/bamtools"]
path = tools/bamtools
url = https://github.com/gkno/bamtools.git
[submodule "tools/freebayes"]
path = tools/freebayes
url = https://github.com/gkno/freebayes.git
[submodule "tools/MOSAIK"]
path = tools/MOSAIK
url = https://github.com/gkno/MOSAIK.git
[submodule "tools/picard"]
path = tools/picard
url = https://github.com/gkno/picard.git
[submodule "tools/samtools"]
path = tools/samtools
url = https://github.com/gkno/samtools.git
[submodule "resources/homo_sapiens"]
path = resources/homo_sapiens
url = https://github.com/gkno/resources-homo_sapiens.git
[submodule "resources/tutorial"]
path = resources/tutorial
url = https://github.com/gkno/resources-tutorial.git
[submodule "tools/vcflib"]
path = tools/vcflib
url = https://github.com/gkno/vcflib.git
[submodule "tools/tabix"]
path = tools/tabix
url = https://github.com/gkno/tabix.git
[submodule "tools/Tangram"]
path = tools/Tangram
url = https://github.com/gkno/Tangram.git
[submodule "tools/bamUtil"]
path = tools/bamUtil
url = https://github.com/gkno/bamUtil.git
[submodule "tools/libStatGen"]
path = tools/libStatGen
url = https://github.com/gkno/libStatGen.git
[submodule "tools/blast"]
path = tools/blast
url = https://github.com/gkno/blast.git
[submodule "tools/Jellyfish"]
path = tools/Jellyfish
url = https://github.com/gkno/Jellyfish.git
[submodule "tools/seqan"]
path = tools/seqan
url = https://github.com/gkno/seqan.git
[submodule "tools/mutatrix"]
path = tools/mutatrix
url = https://github.com/gkno/mutatrix.git
[submodule "tools/fastQValidator"]
path = tools/fastQValidator
url = https://github.com/gkno/fastQValidator.git
[submodule "tools/Rufus"]
path = tools/Rufus
url = https://github.com/gkno/RUFUS.git
[submodule "tools/qplot"]
path = tools/qplot
url = https://github.com/gkno/qplot.git
[submodule "tools/parseSequenceIndex"]
path = tools/parseSequenceIndex
url = https://github.com/gkno/parseSequenceIndex.git
[submodule "tools/verifyBamID"]
path = tools/verifyBamID
url = https://github.com/gkno/verifyBamID.git
[submodule "tools/genomicRegions"]
path = tools/genomicRegions
url = https://github.com/gkno/genomicRegions.git
[submodule "tools/vt"]
path = tools/vt
url = https://github.com/gkno/vt.git
[submodule "tools/bwa"]
path = tools/bwa
url = https://github.com/gkno/bwa.git
[submodule "tools/pindel"]
path = tools/pindel
url = https://github.com/gkno/pindel.git
[submodule "tools/wham"]
path = tools/wham
url = https://github.com/gkno/wham.git
[submodule "tools/bedtools"]
path = tools/bedtools
url = https://github.com/gkno/bedtools2.git
[submodule "tools/htslib"]
path = tools/htslib
url = https://github.com/gkno/htslib.git
[submodule "tools/samblaster"]
path = tools/samblaster
url = https://github.com/gkno/samblaster
[submodule "tools/bamaddrg"]
path = tools/bamaddrg
url = https://github.com/gkno/bamaddrg
[submodule "tools/snpEff"]
path = tools/snpEff
url = https://github.com/gkno/snpEff.git
[submodule "resources/homo_sapiens_grch38"]
path = resources/homo_sapiens_grch38
url = https://github.com/gkno/resources-homo_sapiens_grch38.git
[submodule "resources/homo_sapiens_grch37"]
path = resources/homo_sapiens_grch37
url = https://github.com/gkno/resources-homo_sapiens_grch37.git