From 481ed95338e0d789642055eed7e10dd762ddf6ab Mon Sep 17 00:00:00 2001
From: Abhishek Dasgupta <abhishek.dasgupta@dtc.ox.ac.uk>
Date: Sat, 7 Sep 2024 22:34:04 +0100
Subject: [PATCH] outbreaks(mpox-2024): add aggregate table

---
 src/obr/outbreaks/__init__.py    | 9 +++++++++
 src/obr/outbreaks/mpox-2024.html | 8 ++++++++
 2 files changed, 17 insertions(+)

diff --git a/src/obr/outbreaks/__init__.py b/src/obr/outbreaks/__init__.py
index 71ebcd2..83f3b49 100644
--- a/src/obr/outbreaks/__init__.py
+++ b/src/obr/outbreaks/__init__.py
@@ -4,6 +4,7 @@
 
 from ..plots import (
     get_counts,
+    get_aggregate,
     get_countries_with_status,
     get_countries_with_anyof_statuses,
     plot_epicurve,
@@ -62,6 +63,14 @@
             "button_text": "Download MPXV clades",
         },
     ),
+    (
+        "table/aggregate",
+        get_aggregate,
+        {
+            "country_col": "Location_Admin0",
+            "columns": [("Case_status", "confirmed"), ("Outcome", "death")],
+        },
+    ),
     (
         "data",
         get_countries_with_status,
diff --git a/src/obr/outbreaks/mpox-2024.html b/src/obr/outbreaks/mpox-2024.html
index 3dfbd37..7cc4a4a 100644
--- a/src/obr/outbreaks/mpox-2024.html
+++ b/src/obr/outbreaks/mpox-2024.html
@@ -66,6 +66,14 @@ <h2>Summary</h2>
             </figcaption>
         </figure>
 
+        <figure>
+
+            {{{ aggregate }}}
+
+            <figcaption>
+                <strong>Table 1</strong>: Aggregate data of confirmed cases and deaths by country
+            </figcaption>
+        </figure>
         <figure>
 
             {{{ age_gender }}}