From 30497e47f43e3b77fcad52b7f5316311291790d8 Mon Sep 17 00:00:00 2001
From: koles <koles@google.com>
Date: Fri, 4 Dec 2020 16:42:17 -0800
Subject: [PATCH] Change happy output directory in DeepTrio case studies.

PiperOrigin-RevId: 345782376
---
 docs/deeptrio-pacbio-case-study.md | 6 +++---
 docs/deeptrio-wgs-case-study.md    | 6 +++---
 2 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/docs/deeptrio-pacbio-case-study.md b/docs/deeptrio-pacbio-case-study.md
index 979788ff..33703ebf 100644
--- a/docs/deeptrio-pacbio-case-study.md
+++ b/docs/deeptrio-pacbio-case-study.md
@@ -244,7 +244,7 @@ sudo docker run \
   /output/HG002.output.vcf.gz \
   -f /benchmark/HG002_GRCh38_1_22_v4.2_benchmark.bed \
   -r /reference/GRCh38_no_alt_analysis_set.fasta \
-  -o /happy/happy.output \
+  -o /happy/HG002.output \
   --engine=vcfeval \
   -l chr20
 
@@ -259,7 +259,7 @@ sudo docker run \
   /output/HG003.output.vcf.gz \
   -f /benchmark/HG003_GRCh38_1_22_v4.2_benchmark.bed \
   -r /reference/GRCh38_no_alt_analysis_set.fasta \
-  -o /happy/happy.output \
+  -o /happy/HG003.output \
   --engine=vcfeval \
   -l chr20
 
@@ -274,7 +274,7 @@ sudo docker run \
   /output/HG004.output.vcf.gz \
   -f /benchmark/HG004_GRCh38_1_22_v4.2_benchmark.bed \
   -r /reference/GRCh38_no_alt_analysis_set.fasta \
-  -o /happy/happy.output \
+  -o /happy/HG004.output \
   --engine=vcfeval \
   -l chr20
 ```
diff --git a/docs/deeptrio-wgs-case-study.md b/docs/deeptrio-wgs-case-study.md
index ff106414..2e5ab28c 100644
--- a/docs/deeptrio-wgs-case-study.md
+++ b/docs/deeptrio-wgs-case-study.md
@@ -229,7 +229,7 @@ sudo docker run \
   /output/HG002.output.vcf.gz \
   -f /benchmark/HG002_GRCh38_1_22_v4.2_benchmark.bed \
   -r /reference/GRCh38_no_alt_analysis_set.fasta \
-  -o /happy/happy.output \
+  -o /happy/HG002.output \
   --engine=vcfeval \
   -l chr20
 
@@ -244,7 +244,7 @@ sudo docker run \
   /output/HG003.output.vcf.gz \
   -f /benchmark/HG003_GRCh38_1_22_v4.2_benchmark.bed \
   -r /reference/GRCh38_no_alt_analysis_set.fasta \
-  -o /happy/happy.output \
+  -o /happy/HG003.output \
   --engine=vcfeval \
   -l chr20
 
@@ -259,7 +259,7 @@ sudo docker run \
   /output/HG004.output.vcf.gz \
   -f /benchmark/HG004_GRCh38_1_22_v4.2_benchmark.bed \
   -r /reference/GRCh38_no_alt_analysis_set.fasta \
-  -o /happy/happy.output \
+  -o /happy/HG004.output \
   --engine=vcfeval \
   -l chr20
 ```