Turtle output

[subwaystation]

In order to feed that data into our SPARQL endpoint, we need to provide the data structure in .ttl format. The ontology is defined in vgteam/vg#2710.

Questions:

• Do we want to use https://github.com/RDFLib/rdflib? We would have to add code to build an RDF store comparable to SpOdgi and then we could serialize it to turtle: https://github.com/pangenome/spodgi/blob/master/odgi_to_rdf.py.
• We could implement a direct serialization of components -> .ttl

@6br @JervenBolleman What would you recommend?

[subwaystation]

I will directly emit the .ttl.

[subwaystation]

@JervenBolleman
@dimatr and I were wondering if we could split the output into several .ttl?
Or do you need one .ttl in the end?

[JervenBolleman]

As many as you want. No need for it to be a single file.

…

On Thu, Apr 9, 2020 at 2:20 PM Simon Heumos ***@***.***> wrote: @JervenBolleman <https://github.com/JervenBolleman> @dimatr <https://github.com/dimatr> and I were wondering if we could split the output into several .ttl? Or do you need one .ttl in the end? — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#34 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAHQYFMTQRYRQBNOFOR5ZNDRLW4P7ANCNFSM4MESRXCA> .

-- Jerven Bolleman [email protected]

[subwaystation]

Blocked by #36

[josiahseaman]

This issue should no longer be blocked by #36