Skip to content

issues Search Results · repo:griffithlab/DeepSVR language:"Jupyter Notebook"

Filter by

7 results
 (87 ms)

7 results

ingriffithlab/DeepSVR (press backspace or delete to remove)

griffithlab/DeepSVR
All candidates are predicted as true mutations

Dear DeepSVR team, Thank you for providing this tool for the community. I have tried it on two cell lines with known mutation sites (majority are true mutations) and realized that the tool predicts every ...
  • ozlemmuslu
  • 1
  • Opened 
    on May 18, 2020
  • #16

griffithlab/DeepSVR
Deepsvr package not installing

Hello, First of all, thank you for the valuable work and detailed tutorial. I was trying to install the Deepsvr package on Anaconda (OS: Window 64bit) and confronted with incompatibility issue that seems ...
  • yi6kim
  • 2
  • Opened 
    on Dec 12, 2019
  • #15

griffithlab/DeepSVR
Pre-trained models

Are there pre-trained models in the repository? After looking through the repo, I have found 3 instances of saved models: 1. DeepSVR/deepsvr/data 2. DeepSVR/deepsvr/tests/test_data/training_data 3. ...
  • matnguyen
  • Opened 
    on Aug 2, 2019
  • #14

griffithlab/DeepSVR
Fix broken links to data assembly python notebooks

Links to python notebooks on page https://github.com/griffithlab/DeepSVR/wiki/Data-Assembly give 404 file not found errors. Broken links: - https://github.com/griffithlab/DeepSVR/blob/master/notebooks/Add%20project%20specific%20features.ipynb ...
  • aloraine
  • 1
  • Opened 
    on Nov 14, 2018
  • #11

griffithlab/DeepSVR
Inverted ROC

Hi, I tried running DeepSVR by selecting around 300 raw mutect calls (i.e accepted and rejected), Of the 304 variants mutect ultimately accepted 45 and rejected 259, mostly because they were present in ...
  • AidanJFlynn
  • 9
  • Opened 
    on Nov 8, 2018
  • #10

griffithlab/DeepSVR
sample.review.one_based file

Is the sample.review.one_based file necessary for data preparation? If so, how is it different from sample.review?
  • przemekl
  • 6
  • Opened 
    on Nov 7, 2018
  • #9

griffithlab/DeepSVR
nonexistent directory 'create_classifier'

Wiki page https://github.com/griffithlab/DeepSVR/wiki/Create-the-Classifier contains links to nonexistent directory https://github.com/griffithlab/DeepSVR/tree/master/deepsvr/tests/test_data/create_classifier/ ...
  • przemekl
  • 6
  • Opened 
    on Nov 6, 2018
  • #8
Issue origami icon

Learn how you can use GitHub Issues to plan and track your work.

Save views for sprints, backlogs, teams, or releases. Rank, sort, and filter issues to suit the occasion. The possibilities are endless.Learn more about GitHub Issues
ProTip! 
Restrict your search to the title by using the in:title qualifier.
Issue origami icon

Learn how you can use GitHub Issues to plan and track your work.

Save views for sprints, backlogs, teams, or releases. Rank, sort, and filter issues to suit the occasion. The possibilities are endless.Learn more about GitHub Issues
ProTip! 
Restrict your search to the title by using the in:title qualifier.
Issue search results · GitHub