Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

RNA stranded sequencing with wrong XS tags #199

Open
zhangpicb opened this issue Feb 6, 2025 · 0 comments
Open

RNA stranded sequencing with wrong XS tags #199

zhangpicb opened this issue Feb 6, 2025 · 0 comments

Comments

@zhangpicb
Copy link

Dear @kcotto @yang-yangfeng and other authors,

Thanks for the great tool!

When I use STAR mapping stranded RNA sequencing data with wrong parameter

 --outSAMstrandField intronMotif

but when use regtools

regtools junctions extract -a 8 -m 50 -M 500000 -s RF

The results will be OK? or not.

Thanks in advanced!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant