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tf_factor_rule.txt
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Family SubFamily DNA-binding domain Auxiliary domain Forbidden domain
AP2/ERF AP2 AP2 (>=2) (PF00847) - -
AP2/ERF ERF AP2 (1) (PF00847) - -
AP2/ERF RAV AP2 (PF00847) and B3 (PF02362) - -
B3 superfamily ARF B3 (PF02362) Auxin_resp (PF06507) -
B3 superfamily B3 B3 (PF02362) - -
BBR-BPC BBR-BPC GAGA_bind (PF06217) - -
BES1 BES1 DUF822 (PF05687) - -
bHLH bHLH HLH (PF00010) - -
bZIP bZIP bZIP_1 (PF00170) - -
C2C2 CO-like zf-B_box (PF00643) CCT (PF06203) -
C2C2 Dof Zf-Dof (PF02701) - -
C2C2 GATA GATA-zf (PF00320) - -
C2C2 LSD Zf-LSD1 (PF06943) - Peptidase_C14 (PF00656)
C2C2 YABBY YABBY (PF04690) - -
C2H2 C2H2 zf-C2H2 (PF00096) - RNase_T (PF00929)
C3H C3H Zf-CCCH (PF00642) - RRM_1 (PF00076) or Helicase_C (PF00271)
CAMTA CAMTA CG1 (PF03859) - -
CPP CPP TCR (PF03638) - -
DBB DBB zf-B_box (>=2) (PF00643) - -
E2F/DP E2F/DP E2F_TDP (PF02319) - -
EIL EIL EIN3 (PF04873) - -
FAR1 FAR1 FAR1 (PF03101) - -
GARP ARR-B G2-like (self-build) Response_reg (PF00072) -
GARP G2-like G2-like (self-build) - -
GeBP GeBP DUF573 (PF04504) - -
GRAS GRAS GRAS (PF03514) - -
GRF GRF WRC (PF08879) QLQ (PF08880) -
HB HD-ZIP Homeobox (PF00046) HD-ZIP_I/II (self-build) or SMART (PF01852) -
HB TALE Homeobox (PF00046) BELL (self-build)or ELK (PF03789) -
HB WOX homeobox (PF00046) Wus type homeobox (self-build) -
HB HB-PHD homeobox (PF00046) PHD (PF00628) -
HB HB-other homeobox (PF00046) - -
HRT-like HRT-like HRT-like (self-build) - -
HSF HSF HSF_dna_bind (PF00447) - -
LBD (AS2/LOB) LBD (AS2/LOB) DUF260 (PF03195) - -
LFY LFY FLO_LFY (PF01698) - -
MADS M_type SRF-TF (PF00319) - -
MADS MIKC SRF-TF (PF00319) K-box (PF01486) -
MYB superfamily MYB Myb_dna_bind (>=2) (PF00249) - SWIRM (PF04433)
MYB superfamily MYB_related Myb_dna_bind (1) (PF00249) - SWIRM (PF04433)
NAC NAC NAM (PF02365) - -
NF-X1 NF-X1 Zf-NF-X1 (PF01422) - -
NF-Y NF-YA CBFB_NFYA (PF02045) - -
NF-Y NF-YB NF-YB (self-build) - -
NF-Y NF-YC NF-YC (self-build) - -
Nin-like Nin-like RWP-RK (PF02042) - -
NZZ/SPL NZZ/SPL NOZZLE (PF08744) - -
S1Fa-like S1Fa-like S1FA (PF04689) - -
SAP SAP SAP (self-build) - -
SBP SBP SBP (PF03110) - -
SRS SRS DUF702 (PF05142) - -
STAT STAT STAT (self-build) - -
TCP TCP TCP (PF03634) - -
Trihelix Trihelix Trihelix (self-build) - -
VOZ VOZ VOZ (self-build) - -
Whirly Whirly Whirly (PF08536) - -
WRKY WRKY WRKY (PF03106) - -
ZF-HD ZF-HD ZF-HD_dimer (PF04770) - -