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Leidenalg not found error #187

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SimonDMurray opened this issue Jul 27, 2022 · 1 comment
Open

Leidenalg not found error #187

SimonDMurray opened this issue Jul 27, 2022 · 1 comment

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@SimonDMurray
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When running the single cell RNA seq course last week. We found that the command:
srat <- FindClusters(srat, verbose = F, algorithm = 4, resolution = 0.9)

produced the error:
Error: Cannot find Leiden algorithm, please install through pip (e.g. pip install leidenalg).

even though the dockerfile contains:
RUN pip install --upgrade --no-cache leidenalg

This error occurred when students tried to run the Seurat notebook through Rstudio.

@SimonDMurray
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