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When running the single cell RNA seq course last week. We found that the command: srat <- FindClusters(srat, verbose = F, algorithm = 4, resolution = 0.9)
produced the error: Error: Cannot find Leiden algorithm, please install through pip (e.g. pip install leidenalg).
even though the dockerfile contains: RUN pip install --upgrade --no-cache leidenalg
This error occurred when students tried to run the Seurat notebook through Rstudio.
The text was updated successfully, but these errors were encountered:
When running the single cell RNA seq course last week. We found that the command:
srat <- FindClusters(srat, verbose = F, algorithm = 4, resolution = 0.9)
produced the error:
Error: Cannot find Leiden algorithm, please install through pip (e.g. pip install leidenalg).
even though the dockerfile contains:
RUN pip install --upgrade --no-cache leidenalg
This error occurred when students tried to run the Seurat notebook through Rstudio.
The text was updated successfully, but these errors were encountered: