From ab3cb9876ddb61987c85c23baa7ce2cf036c0fef Mon Sep 17 00:00:00 2001
From: Sebastian Uhrig <s.uhrig@dkfz.de>
Date: Fri, 23 Dec 2022 11:16:35 +0100
Subject: [PATCH] FILTER description in VCF header

---
 scripts/convert_fusions_to_vcf.sh | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/scripts/convert_fusions_to_vcf.sh b/scripts/convert_fusions_to_vcf.sh
index 51e36d0..0145287 100755
--- a/scripts/convert_fusions_to_vcf.sh
+++ b/scripts/convert_fusions_to_vcf.sh
@@ -34,7 +34,8 @@ awk -F '\t' '
 	FILENAME == "/dev/stdin" { contigs[$0] }
 	FILENAME != "/dev/stdin" && $1 in contigs { print "##contig=<ID="$1",length="$2">" }
 ' /dev/stdin "$ASSEMBLY.fai" >> "$OUTPUT"
-echo '##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
+echo '##FILTER=<ID=PASS,Description="All filters passed">
+##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
 ##INFO=<ID=MATEID,Number=.,Type=String,Description="ID of mate breakends">
 ##INFO=<ID=GENE_NAME,Number=.,Type=String,Description="Name of gene hit by breakpoint">
 ##INFO=<ID=GENE_ID,Number=.,Type=String,Description="ID of gene hit by breakpoint">