From 8c6fd66e6e9018fb81fb056cb471df3a3a571f57 Mon Sep 17 00:00:00 2001
From: Aditya Saini <adityasaini10012001@outlook.com>
Date: Fri, 28 Jun 2024 08:41:32 +0530
Subject: [PATCH] Move GPML Shapes from edges to nodes folder

---
 app/img/edges/binding.drawio (4).svg          |  4 +++
 app/img/nodes/DNA.svg                         |  2 +-
 app/img/{edges => nodes}/cell.svg             |  0
 app/img/{edges => nodes}/circle.svg           |  0
 .../{edges => nodes}/extracellularregion.svg  |  0
 app/img/nodes/gene-product.svg                |  2 +-
 app/img/nodes/gene1.drawio (1).svg            |  4 +++
 app/img/{edges => nodes}/golgiapparatus.svg   |  0
 app/img/{edges => nodes}/hexagon.svg          |  0
 app/img/{edges => nodes}/mitochondria.svg     |  0
 app/img/{edges => nodes}/nucleus.svg          |  0
 app/img/{edges => nodes}/octagon.svg          |  0
 app/img/{edges => nodes}/organelle.svg        |  0
 app/img/{edges => nodes}/pentagon.svg         |  0
 app/img/nodes/protein-gpml.svg                |  2 +-
 app/img/{edges => nodes}/rectangle.svg        |  0
 app/img/{edges => nodes}/roundedrectangle.svg |  0
 app/img/{edges => nodes}/triangle.svg         |  0
 app/img/{edges => nodes}/vesicle.svg          |  0
 index.html                                    | 32 +++++++++----------
 20 files changed, 27 insertions(+), 19 deletions(-)
 create mode 100644 app/img/edges/binding.drawio (4).svg
 rename app/img/{edges => nodes}/cell.svg (100%)
 rename app/img/{edges => nodes}/circle.svg (100%)
 rename app/img/{edges => nodes}/extracellularregion.svg (100%)
 create mode 100644 app/img/nodes/gene1.drawio (1).svg
 rename app/img/{edges => nodes}/golgiapparatus.svg (100%)
 rename app/img/{edges => nodes}/hexagon.svg (100%)
 rename app/img/{edges => nodes}/mitochondria.svg (100%)
 rename app/img/{edges => nodes}/nucleus.svg (100%)
 rename app/img/{edges => nodes}/octagon.svg (100%)
 rename app/img/{edges => nodes}/organelle.svg (100%)
 rename app/img/{edges => nodes}/pentagon.svg (100%)
 rename app/img/{edges => nodes}/rectangle.svg (100%)
 rename app/img/{edges => nodes}/roundedrectangle.svg (100%)
 rename app/img/{edges => nodes}/triangle.svg (100%)
 rename app/img/{edges => nodes}/vesicle.svg (100%)

diff --git a/app/img/edges/binding.drawio (4).svg b/app/img/edges/binding.drawio (4).svg
new file mode 100644
index 000000000..63d859287
--- /dev/null
+++ b/app/img/edges/binding.drawio (4).svg	
@@ -0,0 +1,4 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- Do not edit this file with editors other than draw.io -->
+<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN" "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
+<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" version="1.1" width="41px" height="17px" viewBox="-0.5 -0.5 41 17" content="&lt;mxfile host=&quot;app.diagrams.net&quot; modified=&quot;2024-06-28T02:25:06.326Z&quot; agent=&quot;Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/125.0.0.0 Safari/537.36&quot; etag=&quot;sqaW1dv_j3RUkPlz7R0J&quot; version=&quot;24.6.3&quot; type=&quot;google&quot; scale=&quot;1&quot; border=&quot;0&quot;&gt;&#10;  &lt;diagram name=&quot;Page-1&quot; id=&quot;Zv0p4ZRJ3lb28O2X4JgO&quot;&gt;&#10;    &lt;mxGraphModel dx=&quot;1097&quot; dy=&quot;555&quot; grid=&quot;1&quot; gridSize=&quot;10&quot; guides=&quot;1&quot; tooltips=&quot;1&quot; connect=&quot;1&quot; arrows=&quot;1&quot; fold=&quot;1&quot; page=&quot;1&quot; pageScale=&quot;1&quot; pageWidth=&quot;850&quot; pageHeight=&quot;1100&quot; background=&quot;#FFFFFF&quot; math=&quot;0&quot; shadow=&quot;0&quot;&gt;&#10;      &lt;root&gt;&#10;        &lt;mxCell id=&quot;0&quot; /&gt;&#10;        &lt;mxCell id=&quot;1&quot; parent=&quot;0&quot; /&gt;&#10;        &lt;mxCell id=&quot;4AtHRBGAZ1zVeppKE3sB-4&quot; value=&quot;&quot; style=&quot;endArrow=classic;html=1;rounded=0;strokeWidth=2;&quot; parent=&quot;1&quot; edge=&quot;1&quot;&gt;&#10;          &lt;mxGeometry width=&quot;50&quot; height=&quot;50&quot; relative=&quot;1&quot; as=&quot;geometry&quot;&gt;&#10;            &lt;mxPoint x=&quot;250&quot; y=&quot;190&quot; as=&quot;sourcePoint&quot; /&gt;&#10;            &lt;mxPoint x=&quot;274&quot; y=&quot;190&quot; as=&quot;targetPoint&quot; /&gt;&#10;          &lt;/mxGeometry&gt;&#10;        &lt;/mxCell&gt;&#10;      &lt;/root&gt;&#10;    &lt;/mxGraphModel&gt;&#10;  &lt;/diagram&gt;&#10;&lt;/mxfile&gt;&#10;" style="background-color: rgb(255, 255, 255);"><defs/><rect fill="#FFFFFF" width="100%" height="100%" x="0" y="0"/><g><g data-cell-id="0"><g data-cell-id="1"><g data-cell-id="4AtHRBGAZ1zVeppKE3sB-4"><g><path d="M 8 8 L 23.76 8" fill="none" stroke="rgb(0, 0, 0)" stroke-width="2" stroke-miterlimit="10" pointer-events="stroke"/><path d="M 29.76 8 L 21.76 12 L 23.76 8 L 21.76 4 Z" fill="rgb(0, 0, 0)" stroke="rgb(0, 0, 0)" stroke-width="2" stroke-miterlimit="10" pointer-events="all"/></g></g></g></g></g></svg>
\ No newline at end of file
diff --git a/app/img/nodes/DNA.svg b/app/img/nodes/DNA.svg
index a1a4277c0..f6497bbef 100644
--- a/app/img/nodes/DNA.svg
+++ b/app/img/nodes/DNA.svg
@@ -1,4 +1,4 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!-- Do not edit this file with editors other than draw.io -->
 <!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN" "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
-<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" version="1.1" width="85px" height="85px" viewBox="-0.5 -0.5 85 85" content="&lt;mxfile host=&quot;app.diagrams.net&quot; modified=&quot;2024-06-21T02:18:13.927Z&quot; agent=&quot;Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/125.0.0.0 Safari/537.36&quot; etag=&quot;xP9xrQHsqbnQ29pYnumw&quot; version=&quot;24.6.0&quot; type=&quot;google&quot; scale=&quot;1&quot; border=&quot;0&quot;&gt;&#10;  &lt;diagram name=&quot;Page-1&quot; id=&quot;q1-SDoWiZCvx7y37Y8ex&quot;&gt;&#10;    &lt;mxGraphModel dx=&quot;1434&quot; dy=&quot;799&quot; grid=&quot;1&quot; gridSize=&quot;10&quot; guides=&quot;1&quot; tooltips=&quot;1&quot; connect=&quot;1&quot; arrows=&quot;1&quot; fold=&quot;1&quot; page=&quot;1&quot; pageScale=&quot;1&quot; pageWidth=&quot;850&quot; pageHeight=&quot;1100&quot; background=&quot;#ffffff&quot; math=&quot;0&quot; shadow=&quot;0&quot;&gt;&#10;      &lt;root&gt;&#10;        &lt;object label=&quot;&quot; id=&quot;0&quot;&gt;&#10;          &lt;mxCell /&gt;&#10;        &lt;/object&gt;&#10;        &lt;mxCell id=&quot;1&quot; parent=&quot;0&quot; /&gt;&#10;        &lt;mxCell id=&quot;uN-oIFkim_hjW-EH7Oua-1&quot; value=&quot;DNA&quot; style=&quot;rounded=0;whiteSpace=wrap;html=1;strokeWidth=5;fontSize=30;&quot; parent=&quot;1&quot; vertex=&quot;1&quot;&gt;&#10;          &lt;mxGeometry x=&quot;300&quot; y=&quot;190&quot; width=&quot;80&quot; height=&quot;80&quot; as=&quot;geometry&quot; /&gt;&#10;        &lt;/mxCell&gt;&#10;      &lt;/root&gt;&#10;    &lt;/mxGraphModel&gt;&#10;  &lt;/diagram&gt;&#10;&lt;/mxfile&gt;&#10;" style="background-color: rgb(255, 255, 255);"><defs/><rect fill="#ffffff" width="100%" height="100%" x="0" y="0"/><g><g data-cell-id="0"><g data-cell-id="1"><g data-cell-id="uN-oIFkim_hjW-EH7Oua-1"><g><rect x="2" y="2" width="80" height="80" fill="rgb(255, 255, 255)" stroke="rgb(0, 0, 0)" stroke-width="5" pointer-events="all"/></g><g><g transform="translate(-0.5 -0.5)"><switch><foreignObject pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility" style="overflow: visible; text-align: left;"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe center; justify-content: unsafe center; width: 78px; height: 1px; padding-top: 42px; margin-left: 3px;"><div data-drawio-colors="color: rgb(0, 0, 0); " style="box-sizing: border-box; font-size: 0px; text-align: center;"><div style="display: inline-block; font-size: 30px; font-family: Helvetica; color: rgb(0, 0, 0); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;">DNA</div></div></div></foreignObject><text x="42" y="51" fill="rgb(0, 0, 0)" font-family="&quot;Helvetica&quot;" font-size="30px" text-anchor="middle">DNA</text></switch></g></g></g></g></g></g></svg>
\ No newline at end of file
+<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" version="1.1" width="43px" height="33px" viewBox="-0.5 -0.5 43 33" content="&lt;mxfile host=&quot;app.diagrams.net&quot; modified=&quot;2024-06-28T03:00:38.917Z&quot; agent=&quot;Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/125.0.0.0 Safari/537.36&quot; etag=&quot;m8uwkqR6zn0EpIdbJv0J&quot; version=&quot;24.6.3&quot; type=&quot;google&quot; scale=&quot;1&quot; border=&quot;0&quot;&gt;&#10;  &lt;diagram name=&quot;Page-1&quot; id=&quot;i3CGTynv7duNABP0OKcN&quot;&gt;&#10;    &lt;mxGraphModel dx=&quot;1924&quot; dy=&quot;555&quot; grid=&quot;1&quot; gridSize=&quot;10&quot; guides=&quot;1&quot; tooltips=&quot;1&quot; connect=&quot;1&quot; arrows=&quot;1&quot; fold=&quot;1&quot; page=&quot;1&quot; pageScale=&quot;1&quot; pageWidth=&quot;827&quot; pageHeight=&quot;1169&quot; math=&quot;0&quot; shadow=&quot;0&quot;&gt;&#10;      &lt;root&gt;&#10;        &lt;mxCell id=&quot;0&quot; /&gt;&#10;        &lt;mxCell id=&quot;1&quot; parent=&quot;0&quot; /&gt;&#10;        &lt;mxCell id=&quot;5kA5N6ndATuV0K74gQPi-7&quot; value=&quot;&amp;lt;font style=&amp;quot;font-size: 15px;&amp;quot;&amp;gt;DNA&amp;lt;/font&amp;gt;&quot; style=&quot;rounded=0;whiteSpace=wrap;html=1;strokeWidth=3;&quot; parent=&quot;1&quot; vertex=&quot;1&quot;&gt;&#10;          &lt;mxGeometry x=&quot;-400&quot; y=&quot;170&quot; width=&quot;40&quot; height=&quot;30&quot; as=&quot;geometry&quot; /&gt;&#10;        &lt;/mxCell&gt;&#10;      &lt;/root&gt;&#10;    &lt;/mxGraphModel&gt;&#10;  &lt;/diagram&gt;&#10;&lt;/mxfile&gt;&#10;" style="background-color: rgb(255, 255, 255);"><defs/><rect fill="#ffffff" width="100%" height="100%" x="0" y="0"/><g><g data-cell-id="0"><g data-cell-id="1"><g data-cell-id="5kA5N6ndATuV0K74gQPi-7"><g><rect x="1" y="1" width="40" height="30" fill="rgb(255, 255, 255)" stroke="rgb(0, 0, 0)" stroke-width="3" pointer-events="all"/></g><g><g transform="translate(-0.5 -0.5)"><switch><foreignObject pointer-events="none" width="100%" height="100%" requiredFeatures="http://www.w3.org/TR/SVG11/feature#Extensibility" style="overflow: visible; text-align: left;"><div xmlns="http://www.w3.org/1999/xhtml" style="display: flex; align-items: unsafe center; justify-content: unsafe center; width: 38px; height: 1px; padding-top: 16px; margin-left: 2px;"><div data-drawio-colors="color: rgb(0, 0, 0); " style="box-sizing: border-box; font-size: 0px; text-align: center;"><div style="display: inline-block; font-size: 12px; font-family: Helvetica; color: rgb(0, 0, 0); line-height: 1.2; pointer-events: all; white-space: normal; overflow-wrap: normal;"><font style="font-size: 15px;">DNA</font></div></div></div></foreignObject><image x="2" y="7.5" width="38" height="21" 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\ No newline at end of file
diff --git a/app/img/edges/cell.svg b/app/img/nodes/cell.svg
similarity index 100%
rename from app/img/edges/cell.svg
rename to app/img/nodes/cell.svg
diff --git a/app/img/edges/circle.svg b/app/img/nodes/circle.svg
similarity index 100%
rename from app/img/edges/circle.svg
rename to app/img/nodes/circle.svg
diff --git a/app/img/edges/extracellularregion.svg b/app/img/nodes/extracellularregion.svg
similarity index 100%
rename from app/img/edges/extracellularregion.svg
rename to app/img/nodes/extracellularregion.svg
diff --git a/app/img/nodes/gene-product.svg b/app/img/nodes/gene-product.svg
index 58fce8a89..1641742e7 100644
--- a/app/img/nodes/gene-product.svg
+++ b/app/img/nodes/gene-product.svg
@@ -1,4 +1,4 @@
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new file mode 100644
index 000000000..aceabfa97
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similarity index 100%
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similarity index 100%
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rename to app/img/nodes/hexagon.svg
diff --git a/app/img/edges/mitochondria.svg b/app/img/nodes/mitochondria.svg
similarity index 100%
rename from app/img/edges/mitochondria.svg
rename to app/img/nodes/mitochondria.svg
diff --git a/app/img/edges/nucleus.svg b/app/img/nodes/nucleus.svg
similarity index 100%
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rename to app/img/nodes/nucleus.svg
diff --git a/app/img/edges/octagon.svg b/app/img/nodes/octagon.svg
similarity index 100%
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rename to app/img/nodes/octagon.svg
diff --git a/app/img/edges/organelle.svg b/app/img/nodes/organelle.svg
similarity index 100%
rename from app/img/edges/organelle.svg
rename to app/img/nodes/organelle.svg
diff --git a/app/img/edges/pentagon.svg b/app/img/nodes/pentagon.svg
similarity index 100%
rename from app/img/edges/pentagon.svg
rename to app/img/nodes/pentagon.svg
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diff --git a/app/img/edges/rectangle.svg b/app/img/nodes/rectangle.svg
similarity index 100%
rename from app/img/edges/rectangle.svg
rename to app/img/nodes/rectangle.svg
diff --git a/app/img/edges/roundedrectangle.svg b/app/img/nodes/roundedrectangle.svg
similarity index 100%
rename from app/img/edges/roundedrectangle.svg
rename to app/img/nodes/roundedrectangle.svg
diff --git a/app/img/edges/triangle.svg b/app/img/nodes/triangle.svg
similarity index 100%
rename from app/img/edges/triangle.svg
rename to app/img/nodes/triangle.svg
diff --git a/app/img/edges/vesicle.svg b/app/img/nodes/vesicle.svg
similarity index 100%
rename from app/img/edges/vesicle.svg
rename to app/img/nodes/vesicle.svg
diff --git a/index.html b/index.html
index 6451df186..b6218c654 100644
--- a/index.html
+++ b/index.html
@@ -845,7 +845,7 @@
                                                                 <div class="panel-body">
                                                                     <div id="gpml-node-palette" class="element-palette node-palette">
                                                                         <div class="paletteWrapper">
-                                                                            <div class="paletteCol"><img src="app/img/nodes/gene-product.svg" language="GPML"
+                                                                            <div class="paletteCol"><img src="app/img/nodes/gene1.drawio (1).svg" language="GPML"
                                                                                     value="Gene" title="Gene" /></div>
                                                                             <div class="paletteCol"><img src="app/img/nodes/metabolite.svg" language="GPML"
                                                                                     value="Meta" title="Meta" /></div>
@@ -890,7 +890,7 @@
                                                                                     title="catalysis" /></div>
                                                                             <div class="paletteCol"><img src="app/img/edges/stimulation-gpml.svg" language="GPML" value="stimulation"
                                                                                     title="stimulation" /></div>
-                                                                            <div class="paletteCol"><img src="app/img/edges/binding.svg" language="GPML" value="binding"
+                                                                            <div class="paletteCol"><img src="app/img/edges/binding.drawio (4).svg" language="GPML" value="binding"
                                                                                     title="binding" /></div>
                                                                             <div class="paletteCol"><img src="app/img/edges/translocation.svg" language="GPML"
                                                                                     value="translocation" title="translocation" /></div>
@@ -905,33 +905,33 @@
                                                             <div class="panel-body" style="padding-bottom: 0px;">
                                                                 <div id="gpml-edge-palette" class="element-palette edge-palette">
                                                                     <div class="paletteWrapper">
-                                                                        <div class="paletteCol"><img src="app/img/edges/circle.svg" language="GPML"
+                                                                        <div class="paletteCol"><img src="app/img/nodes/circle.svg" language="GPML"
                                                                                 value="circle" title="circle" /></div>
-                                                                        <div class="paletteCol"><img src="app/img/edges/roundedrectangle.svg" language="GPML"
+                                                                        <div class="paletteCol"><img src="app/img/nodes/roundedrectangle.svg" language="GPML"
                                                                                 value="RoundedRectangle" title="RoundedRectangle" /></div>
-                                                                        <div class="paletteCol"><img src="app/img/edges/triangle.svg" language="GPML"
+                                                                        <div class="paletteCol"><img src="app/img/nodes/triangle.svg" language="GPML"
                                                                                 value="triangle" title="Triangle" /></div>
-                                                                        <div class="paletteCol"><img src="app/img/edges/rectangle.svg" language="GPML"
+                                                                        <div class="paletteCol"><img src="app/img/nodes/rectangle.svg" language="GPML"
                                                                                 value="rectangle" title="Rectangle" /></div>
-                                                                        <div class="paletteCol"><img src="app/img/edges/pentagon.svg" language="GPML" 
+                                                                        <div class="paletteCol"><img src="app/img/nodes/pentagon.svg" language="GPML" 
                                                                                 value="pentagon"  title="Pentagon" /></div>       
-                                                                        <div class="paletteCol"><img src="app/img/edges/hexagon.svg" language="GPML"
+                                                                        <div class="paletteCol"><img src="app/img/nodes/hexagon.svg" language="GPML"
                                                                                 value="hexagon" title="Hexagon" /></div>
-                                                                        <div class="paletteCol"><img src="app/img/edges/octagon.svg" language="GPML"
+                                                                        <div class="paletteCol"><img src="app/img/nodes/octagon.svg" language="GPML"
                                                                                 value="octagon" title="Octagon" /></div>
-                                                                        <div class="paletteCol"><img src="app/img/edges/cell.svg" language="GPML"
+                                                                        <div class="paletteCol"><img src="app/img/nodes/cell.svg" language="GPML"
                                                                                 value="cell" title="Cell" /></div>
-                                                                        <div class="paletteCol"><img src="app/img/edges/nucleus.svg" language="GPML"
+                                                                        <div class="paletteCol"><img src="app/img/nodes/nucleus.svg" language="GPML"
                                                                                 value="nucleus" title="Nucleus" /></div>
-                                                                        <div class="paletteCol"><img src="app/img/edges/golgiapparatus.svg" language="GPML"
+                                                                        <div class="paletteCol"><img src="app/img/nodes/golgiapparatus.svg" language="GPML"
                                                                                 value="golgiapparatus" title="GolgiApparatus" /></div>
-                                                                        <div class="paletteCol"><img src="app/img/edges/mitochondria.svg" language="GPML" 
+                                                                        <div class="paletteCol"><img src="app/img/nodes/mitochondria.svg" language="GPML" 
                                                                             value="mitochondria"  title="Mitochondria" /></div>
-                                                                        <div class="paletteCol"><img src="app/img/edges/organelle.svg" language="GPML" 
+                                                                        <div class="paletteCol"><img src="app/img/nodes/organelle.svg" language="GPML" 
                                                                             value="organelle" title="Organelle" /></div>
-                                                                        <div class="paletteCol"><img src="app/img/edges/vesicle.svg" language="GPML" 
+                                                                        <div class="paletteCol"><img src="app/img/nodes/vesicle.svg" language="GPML" 
                                                                             value="vesicle" title="Vesicle" /></div>
-                                                                        <div class="paletteCol"><img src="app/img/edges/extracellularregion.svg" language="GPML" 
+                                                                        <div class="paletteCol"><img src="app/img/nodes/extracellularregion.svg" language="GPML" 
                                                                             value="extracellularregion" title="ExtracellularRegion" /></div>