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CHANGELOG.md

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opentile changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

Unreleased -

0.13.4 - 2024-11-06

Fixed

  • Added APERIO_JP2000_YCBC as supported compression format for svs files.

0.13.3 - 2024-10-10

Fixed

  • Relaxed numpy requirement.

0.13.2 - 2024-09-06

Fixed

  • Rounding error when calculating level pyramid index if downsampled image size was rounded up.

0.13.1 - 2024-07-01

Fixed

  • Fix for not closing file handle when OpenTile.open() is not used as a context manager.

0.13.0 - 2024-07-01

Changed

  • More efficient OpenTile.open() by reusing the TiffFile instance.

Removed

  • OpenTile.get_tiler() method removed. Use OpenTile.detect_format() to get the format of a file or OpenTile.open() to get an opened instance of a tiler instead.

Fixed

  • Missing to close file handle when using OpenTile.open() or OpenTile.detect_format().

0.12.0 - 2024-02-20

Added

  • Support for opening files using fsspec.

0.11.2 - 2024-02-20

Fixed

  • Updated ome-types to 0.5.0.

0.11.1 - 2023-12-06

Fixed

  • Missing jpeg headers when using TurboJpeg 3.
  • Check for either libturbojpeg.dll or turbojpeg.dll.

0.11.0 - 2023-12-06

Changed

  • Return iterators of tiles instead of lists.
  • Encode Jpeg and Jpeg 2000 using imagecodecs.

0.10.4 - 2023-11-30

Fixed

  • Order of pixel spacing for philips tiff files.

0.10.3 - 2023-09-01

Fixed

  • Change version requirement for tifffile and imagecodecs to allow newer versions.

0.10.2 - 2023-08-29

Fixed

  • Bumped version of ome-types to support pydantic 2.0.

0.10.1 - 2023-07-07

Fixed

  • Bumped version of ome-types to pin pydantic to 1.x.

0.10.0 - 2023-06-26

Changed

  • Relaxed python requirement to >= 3.8.

0.9.0 - 2023-04-03

Added

  • Basic support for OME tiff files.

Changed

  • Refactored code, renamed OpenTilePage to TiffImage (and reflecting the change to subclasses). Removed abstract method get_image() and added abstract methods get_level(), get_label(), and get_overview().

0.8.1 - 2023-03-31

Added

  • Added conda installation instructions to readme.

Changed

  • Implementation and use of Region updated to that of wsidicom.

0.8.0 - 2023-03-21

Added

  • Added optional image_offset property in metadata class.

Fixed

  • Fixed error in readme.

0.7.1 - 2023-03-15

Fixed

  • Use MCU read from frame instead of from subsampling tag as the latter can be incorrect.

0.7.0 - 2023-02-13

Changed

  • Crop out label and overview page from macro page of ndpi-files.

0.6.0 - 2023-01-24

Changed

  • Added Python 3.11 as supported version.

0.5.0 - 2022-12-13

Changed

  • get_tiles() changed from list comprehension of get_tile to sequentially read all tiles and then process them. This allows all tiles to be read with the same file lock improving threading performance.

0.4.2 - 2022-11-24

Fixed

  • Use PHOTOMETRIC-enum from tifffile for photometric interpretation.
  • Update imagecodecs to 2022.9.26.

0.4.1 - 2022-11-24

Fixed

  • Added missing tag in Philips tiff tiler.

0.4.0 - 2022-11-24

Added

  • Support for 3DHISTECH tiff files.
  • Tiler-property icc_profile returning icc profile if found in file.

Changed

  • tifffile minimum version set to 2022.5.4.
  • Replaced Dict property properties of tilers with property metadata of Metadata-class.

Fixed

  • Use COMPRESSION-enum from TiffFile for compression type checks.
  • Decompress jpeg data to RGB instead of BGR when using turbojpeg.

0.3.0 - 2022-04-20

Added

  • Scripts and github actions for downloading test data.
  • Properties photometric_interpretation, subsampling, and samples_per_pixel for OpenTilePage.
  • enter and exit for Tiler.
  • version added.

Changed

  • Dropped support for python 3.7.

Fixed

  • Generation of blank tiles for philips tiff.
  • Border appearing when cropping one-frammed ndpi pages.
  • Even more descriptive error when jpeg crop fails.

0.2.0 - 2022-02-14

Added

  • Support for svs overview and label images.

Changed

  • More descriptive error when jpeg crop fails.

Fixed

  • Jpeg tables are not duplicated.
  • Return j2k and not jp2 when encoding jpeg2000.

0.1.1 - 2021-12-02

Changed

  • Fix calculations of pixel spacing and mpp.

0.1.0 - 2021-11-30

Added

  • Initial release of opentile.