diff --git a/source/rmarkdown/compositional_analysis/insekp_compositional_differences.Rmd b/source/rmarkdown/compositional_analysis/insekp_compositional_differences.Rmd index 07c47eb..8e409ca 100644 --- a/source/rmarkdown/compositional_analysis/insekp_compositional_differences.Rmd +++ b/source/rmarkdown/compositional_analysis/insekp_compositional_differences.Rmd @@ -193,6 +193,7 @@ m1 <- sccomp_estimate( .cell_group = taxon_resolved, .abundance = count, cores = 4, + output_directory = "sccomp_draws_files", # might want to change this bimodal_mean_variability_association = FALSE, percent_false_positive = 5, inference_method = "pathfinder", # 'hmc'