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As shown below, when searching in the API, the tissue information is there. However, if we use mr.get_mibi_image(image_id), the tissue information is missing from metadata. Same for slides et al. information.
The text was updated successfully, but these errors were encountered:
Thanks @YubinXie for posting this! This is expected behavior (at present) because the image metadata gets written upon TIFF creation, and we need to add better MIBItracker integration to insert that information into the file. This is on our roadmap; in the mean time, you are correct that the information is available from the API (mr.get('/images/229/') in your example), so you can add it to the MibiImage you are working with (im.slide = <xx>).
I will leave this issue open so that we can update on progress of getting the data added as part of upload.
As shown below, when searching in the API, the tissue information is there. However, if we use mr.get_mibi_image(image_id), the tissue information is missing from metadata. Same for slides et al. information.
The text was updated successfully, but these errors were encountered: