From 0b75bae4fd01df9d9e3fef13cf483c53374b4684 Mon Sep 17 00:00:00 2001 From: Mathew Biddle <8480023+MathewBiddle@users.noreply.github.com> Date: Fri, 13 Sep 2024 08:55:08 -0400 Subject: [PATCH] Update use-case.md --- _docs/use-case.md | 28 +++++++++++++++++++++------- 1 file changed, 21 insertions(+), 7 deletions(-) diff --git a/_docs/use-case.md b/_docs/use-case.md index df7e61e..0d42d98 100644 --- a/_docs/use-case.md +++ b/_docs/use-case.md @@ -89,22 +89,36 @@ click I "htpps://data.ioos.us" "IOOS Catalog" _blank click FC "https://data.noaa.gov/onestop/collections/details/55309a04-8383-42ff-b2fe-ab3497431756" "OneStop" _blank ``` -**Order of activities:** +#### Access Points + +Below is a table of the various places to discover these data and the process by which these data were standardized to Darwin Core. + +Source | URL +-------|----- +NERACOOS ERDDAP | +Data standardization process | +NCEI | +OBIS-USA IPT | +OBIS | +GBIF | +IOOS Catalog | +NOAA OneStop | + +### Order of activities:** 1. Serve data and metadata on RA ERDDAP 2. Align ERDDAP data to DarwinCore 3. Share to OBIS-USA 4. OBIS-USA shares via IPT to OBIS and GBIF -5. -### Serving raw data via IOOS RA ERDDAP +#### Serving raw data via IOOS RA ERDDAP Raw Gulf of Maine WBTS Calanus Abundance Observations available in ERDDAP: -### Aligning raw data to Darwin Core +#### Aligning raw data to Darwin Core This dataset was processed by Dylan Pugh during the 2022 Marine BioData Mobilization Workshop in the notebook linked below: **MBTS MBON process:** -### Sending data to OBIS-USA +#### Sending data to OBIS-USA Data were submitted to OBIS-USA by contributing the Darwin Core aligned files (and code) to the [ioos/bio-data-guide](https://github.com/ioos/bio_data_guide) repository. See this [GitHub Issue](https://github.com/ioos/bio_data_guide/issues/102) and subsequent Pull Requests [here](https://github.com/ioos/bio_data_guide/pull/101) and [here](https://github.com/ioos/bio_data_guide/pull/108) for more information on the conversion process. The processed files were uploaded to the repository and OBIS-USA downloaded them for loading in the OBIS-USA IPT. @@ -115,7 +129,7 @@ Data were shared to OBIS at: -### Sending data to NCEI +#### Sending data to NCEI 1. Use [ERDDAP's `ArchiveADataset.sh`](https://coastwatch.pfeg.noaa.gov/erddap/download/setup.html#ArchiveADataset) for the dataset to create an archival package for submission to NCEI as a one-off via [Send2NCEI](https://www.ncei.noaa.gov/archive/send2ncei/). 1. To run as a one liner with a [Docker deployed ERDDAP](https://ioos.github.io/erddap-gold-standard/index.html), use this ``` @@ -140,7 +154,7 @@ Data were shared to GBIF at: