From 625b7d8a40e3d54a4191d70f7dc41f7691c717ea Mon Sep 17 00:00:00 2001
From: rafapereirabr <rafa.pereira.br@gmail.com>
Date: Mon, 16 Sep 2024 15:25:21 -0300
Subject: [PATCH] coverage from gtfstools

---
 .github/workflows/test-coverage.yaml | 60 ++++++++++++++++------------
 1 file changed, 34 insertions(+), 26 deletions(-)

diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
index 2c5bb50..aa01bff 100644
--- a/.github/workflows/test-coverage.yaml
+++ b/.github/workflows/test-coverage.yaml
@@ -1,50 +1,58 @@
 # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
 # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+
 on:
   push:
-    branches: [main, master]
+    branches:
+      - main
+      - master
   pull_request:
-    branches: [main, master]
+    branches:
+      - main
+      - master
 
 name: test-coverage
 
 jobs:
   test-coverage:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     env:
+      RSPM: https://packagemanager.rstudio.com/cran/__linux__/jammy/latest
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v2
 
       - uses: r-lib/actions/setup-r@v2
-        with:
-          use-public-rspm: true
+        id: install-r
+
+      - name: Install pak and query dependencies
+        run: |
+          install.packages("pak", repos = "https://r-lib.github.io/p/pak/dev/")
+          saveRDS(pak::pkg_deps("local::.", dependencies = TRUE), ".github/r-depends.rds")
+        shell: Rscript {0}
 
-      - uses: r-lib/actions/setup-r-dependencies@v2
+      - name: Restore R package cache
+        uses: actions/cache@v2
         with:
-          extra-packages: any::covr
-          needs: coverage
+          path: |
+            ${{ env.R_LIBS_USER }}/*
+            !${{ env.R_LIBS_USER }}/pak
+          key: ubuntu-22.04-${{ steps.install-r.outputs.installed-r-version }}-1-${{ hashFiles('.github/r-depends.rds') }}
+          restore-keys: ubuntu-22.04-${{ steps.install-r.outputs.installed-r-version }}-1-
 
-      - name: Test coverage
+      - name: Install system dependencies
         run: |
-          covr::codecov(
-            quiet = FALSE,
-            clean = FALSE,
-            install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package")
-          )
+          pak::local_system_requirements(execute = TRUE)
+          pak::pkg_system_requirements("covr", execute = TRUE)
         shell: Rscript {0}
 
-      - name: Show testthat output
-        if: always()
+      - name: Install dependencies
         run: |
-          ## --------------------------------------------------------------------
-          find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
-        shell: bash
+          pak::local_install_dev_deps(upgrade = TRUE)
+          pak::pkg_install("covr")
+        shell: Rscript {0}
 
-      - name: Upload test results
-        if: failure()
-        uses: actions/upload-artifact@v3
-        with:
-          name: coverage-test-failures
-          path: ${{ runner.temp }}/package
+      - name: Test coverage
+        run: covr::codecov(quiet = FALSE)
+        shell: Rscript {0}