pyfasta.fasta.FastaNotFound: "True"

[abrozzi]

Hi all,

when running:

bigsi bulk_search -c config_10K_00.yaml -f csv -t 0.0 --score True foo.fas

with the files of the paper
https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000499

I get this error:

Traceback (most recent call last):
  File "/usr/local/bin/bigsi", line 11, in <module>
    load_entry_point('bigsi==0.3.5', 'console_scripts', 'bigsi')()
  File "/usr/local/lib/python3.7/dist-packages/bigsi-0.3.5-py3.7.egg/bigsi/__main__.py", line 307, in main
  File "/usr/local/lib/python3.7/dist-packages/hug/api.py", line 399, in __call__
    result = self.commands.get(command)()
  File "/usr/local/lib/python3.7/dist-packages/hug/interface.py", line 546, in __call__
    raise exception
  File "/usr/local/lib/python3.7/dist-packages/hug/interface.py", line 542, in __call__
    result = self.output(self.interface(**pass_to_function), context)
  File "/usr/local/lib/python3.7/dist-packages/hug/interface.py", line 100, in __call__
    return __hug_internal_self._function(*args, **kwargs)
  File "/usr/local/lib/python3.7/dist-packages/bigsi-0.3.5-py3.7.egg/bigsi/__main__.py", line 259, in bulk_search
  File "/usr/local/lib/python3.7/dist-packages/pyfasta/fasta.py", line 67, in __init__
    raise FastaNotFound('"' + fasta_name + '"')
pyfasta.fasta.FastaNotFound: "True"

Looking in the code --score should accept True or False.

Without --score it works properly.

Where I am wrong?

Thank you in advance,
Alex