diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml index 1adef53..32b5f93 100644 --- a/.github/workflows/ci.yaml +++ b/.github/workflows/ci.yaml @@ -4,16 +4,18 @@ on: push: branches: - main + - dev pull_request: branches: - main + - dev jobs: Testing: runs-on: ${{ matrix.os }} strategy: matrix: - os: [ ubuntu-latest, macos-latest ] + os: [ ubuntu-latest ] python-version: [ 3.8, 3.9, "3.10", 3.11 ] steps: - uses: actions/checkout@v3 @@ -30,11 +32,23 @@ jobs: python=${{ matrix.python-version }} snakemake mamba + poetry init-shell: bash cache-environment: true post-cleanup: 'all' - - name: Test workflow (local test data) + + - uses: eWaterCycle/setup-singularity@v7 + with: + singularity-version: 3.7.1 + + - name: Install + shell: bash -el {0} + run: | + micromamba activate test-env + make install-ci + + - name: Test shell: bash -el {0} run: | micromamba activate test-env - python -m unittest discover -v -v -v -s tests -t . \ No newline at end of file + make test \ No newline at end of file diff --git a/Makefile b/Makefile new file mode 100644 index 0000000..429f8cf --- /dev/null +++ b/Makefile @@ -0,0 +1,26 @@ +# Inspired by https://github.com/snakemake/snakefmt/blob/master/Makefile +PROJECT = pling +OS := $(shell uname -s) +VERSION := $(shell poetry version -s) +BOLD := $(shell tput bold) +NORMAL := $(shell tput sgr0) + +.PHONY: all +all: install + +.PHONY: install +install: + poetry install + +.PHONY: install-ci +install-ci: + poetry install --no-interaction + poetry run pling --help + +.PHONY: test +test: + poetry run python -m unittest discover -s tests -t . + +.PHONY: build +build: + poetry build diff --git a/poetry.lock b/poetry.lock index c949195..222f6df 100644 --- a/poetry.lock +++ b/poetry.lock @@ -31,112 +31,112 @@ tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pyte [[package]] name = "certifi" -version = "2023.7.22" +version = "2023.11.17" description = "Python package for providing Mozilla's CA Bundle." optional = false python-versions = ">=3.6" files = [ - {file = "certifi-2023.7.22-py3-none-any.whl", hash = "sha256:92d6037539857d8206b8f6ae472e8b77db8058fec5937a1ef3f54304089edbb9"}, - {file = "certifi-2023.7.22.tar.gz", hash = "sha256:539cc1d13202e33ca466e88b2807e29f4c13049d6d87031a3c110744495cb082"}, + {file = "certifi-2023.11.17-py3-none-any.whl", hash = "sha256:e036ab49d5b79556f99cfc2d9320b34cfbe5be05c5871b51de9329f0603b0474"}, + {file = "certifi-2023.11.17.tar.gz", hash = "sha256:9b469f3a900bf28dc19b8cfbf8019bf47f7fdd1a65a1d4ffb98fc14166beb4d1"}, ] [[package]] name = "charset-normalizer" -version = "3.3.0" +version = "3.3.2" description = "The Real First Universal Charset Detector. 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--git a/pyproject.toml b/pyproject.toml index 3657bda..43a18eb 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -14,9 +14,9 @@ keywords = ["Plasmids", "Comparative genomics", "Genome rearrangement", "DCJ-ind pling = 'pling.run_pling:main' [tool.poetry.dependencies] -python = ">=3.9,<3.13" +python = ">=3.8,<3.13" snakemake = "^7.32.4" -pandas = "^2.1.1" +pandas = "^2.0.3" [build-system] requires = ["poetry-core>=1.0.0"] diff --git a/tests/integration_test/data/all_plasmids_distances.align.truth.tsv b/tests/integration_test/data/all_plasmids_distances.align.truth.tsv new file mode 100644 index 0000000..6ebd00b --- /dev/null +++ b/tests/integration_test/data/all_plasmids_distances.align.truth.tsv @@ -0,0 +1,17 @@ + plasmid_1 plasmid_2 distance +0 CP057418.1 CP057418.1 0 +1 CP057418.1 NZ_CP027199.1 23 +2 CP057418.1 NZ_LR882977.1 19 +3 CP057418.1 NZ_MF510423.1 +4 NZ_CP027199.1 CP057418.1 23 +5 NZ_CP027199.1 NZ_CP027199.1 0 +6 NZ_CP027199.1 NZ_LR882977.1 19 +7 NZ_CP027199.1 NZ_MF510423.1 +8 NZ_LR882977.1 CP057418.1 19 +9 NZ_LR882977.1 NZ_CP027199.1 19 +10 NZ_LR882977.1 NZ_LR882977.1 0 +11 NZ_LR882977.1 NZ_MF510423.1 +12 NZ_MF510423.1 CP057418.1 +13 NZ_MF510423.1 NZ_CP027199.1 +14 NZ_MF510423.1 NZ_LR882977.1 +15 NZ_MF510423.1 NZ_MF510423.1 0 diff --git a/tests/integration_test/data/all_plasmids_distances.anno.truth.tsv b/tests/integration_test/data/all_plasmids_distances.anno.truth.tsv new file mode 100644 index 0000000..0188fde --- /dev/null +++ b/tests/integration_test/data/all_plasmids_distances.anno.truth.tsv @@ -0,0 +1,17 @@ + plasmid_1 plasmid_2 distance +0 CP057418.1 CP057418.1 0 +1 CP057418.1 NZ_CP027199.1 18 +2 CP057418.1 NZ_LR882977.1 14 +3 CP057418.1 NZ_MF510423.1 +4 NZ_CP027199.1 CP057418.1 18 +5 NZ_CP027199.1 NZ_CP027199.1 0 +6 NZ_CP027199.1 NZ_LR882977.1 16 +7 NZ_CP027199.1 NZ_MF510423.1 +8 NZ_LR882977.1 CP057418.1 14 +9 NZ_LR882977.1 NZ_CP027199.1 16 +10 NZ_LR882977.1 NZ_LR882977.1 0 +11 NZ_LR882977.1 NZ_MF510423.1 +12 NZ_MF510423.1 CP057418.1 +13 NZ_MF510423.1 NZ_CP027199.1 +14 NZ_MF510423.1 NZ_LR882977.1 +15 NZ_MF510423.1 NZ_MF510423.1 0 diff --git a/tests/integration_test/data/all_plasmids_matrix.align.truth.dist b/tests/integration_test/data/all_plasmids_matrix.align.truth.dist new file mode 100644 index 0000000..bad1485 --- /dev/null +++ b/tests/integration_test/data/all_plasmids_matrix.align.truth.dist @@ -0,0 +1,5 @@ +4 +CP057418.1 0 23 19 +NZ_CP027199.1 23 0 19 +NZ_LR882977.1 19 19 0 +NZ_MF510423.1 0 diff --git a/tests/integration_test/data/all_plasmids_matrix.anno.truth.dist b/tests/integration_test/data/all_plasmids_matrix.anno.truth.dist new file mode 100644 index 0000000..2e6c9de --- /dev/null +++ b/tests/integration_test/data/all_plasmids_matrix.anno.truth.dist @@ -0,0 +1,5 @@ +4 +CP057418.1 0 18 14 +NZ_CP027199.1 18 0 16 +NZ_LR882977.1 14 16 0 +NZ_MF510423.1 0 diff --git a/tests/integration_test/data/all_plasmids_matrix.truth.dist b/tests/integration_test/data/all_plasmids_matrix.truth.dist deleted file mode 100644 index 572a8d9..0000000 --- a/tests/integration_test/data/all_plasmids_matrix.truth.dist +++ /dev/null @@ -1,5 +0,0 @@ -4 -CP057418.1 0 22 17 -NZ_CP027199.1 22 0 19 -NZ_LR882977.1 17 19 0 -NZ_MF510423.1 0 diff --git a/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR.LIB.h3f b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR.LIB.h3f new file mode 100644 index 0000000..c0ea3d2 Binary files /dev/null and b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR.LIB.h3f differ diff --git a/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR.LIB.h3i b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR.LIB.h3i new file mode 100644 index 0000000..fc43349 Binary files /dev/null and b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR.LIB.h3i differ diff --git a/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR.LIB.h3m b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR.LIB.h3m new file mode 100644 index 0000000..08792c6 Binary files /dev/null and b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR.LIB.h3m differ diff --git a/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR.LIB.h3p b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR.LIB.h3p new file mode 100644 index 0000000..13916d0 Binary files /dev/null and b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR.LIB.h3p differ diff --git a/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMRProt-mutation.tab b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMRProt-mutation.tab new file mode 100644 index 0000000..d72d696 --- /dev/null +++ b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMRProt-mutation.tab @@ -0,0 +1,2 @@ +#taxgroup accession_version mutation_position mutation_symbol class subclass mutated_protein_name +Escherichia WP_000019358.1 12 soxS_A12S MULTIDRUG AMPICILLIN/CHLORAMPHENICOL/QUINOLONE/RIFAMPIN/TETRACYCLINE Escherichia_ampicillin/chloramphenicol/quinolone/rifampin/tetracycline_resistant_SoxS diff --git a/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMRProt-suppress b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMRProt-suppress new file mode 100644 index 0000000..3fa3beb --- /dev/null +++ b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMRProt-suppress @@ -0,0 +1,2 @@ +#taxgroup protein_accession protein_gi +Escherichia AAA21095.1 151858 diff --git a/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMRProt-susceptible.tab b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMRProt-susceptible.tab new file mode 100644 index 0000000..a6fbb92 --- /dev/null +++ b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMRProt-susceptible.tab @@ -0,0 +1,2 @@ +#taxgroup gene_symbol accession_version resistance_cutoff class subclass resistance_protein_name +Streptococcus_pneumoniae pbp1a WP_001040013.1 99.000000 BETA-LACTAM BETA-LACTAM Streptococcus_pneumoniae_beta-lactam_resistant_PBP1A diff --git a/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMRProt.pdb b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMRProt.pdb new file mode 100644 index 0000000..bfdee97 Binary files /dev/null and b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMRProt.pdb differ diff --git a/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMRProt.phr b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMRProt.phr new file mode 100644 index 0000000..846aa17 Binary files /dev/null and b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMRProt.phr differ diff --git a/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMRProt.pin b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMRProt.pin new file mode 100644 index 0000000..114daf9 Binary files /dev/null and b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMRProt.pin differ diff --git a/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMRProt.psq b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMRProt.psq new file mode 100644 index 0000000..87a663b Binary files /dev/null and b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMRProt.psq differ diff --git a/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMRProt.ptf b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMRProt.ptf new file mode 100644 index 0000000..a40a744 Binary files /dev/null and b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMRProt.ptf differ diff --git a/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMRProt.pto b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMRProt.pto new file mode 100644 index 0000000..6ce6e03 Binary files /dev/null and b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMRProt.pto differ diff --git a/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR_CDS.ndb b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR_CDS.ndb new file mode 100644 index 0000000..9b89ab9 Binary files /dev/null and b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR_CDS.ndb differ diff --git a/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR_CDS.nhr b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR_CDS.nhr new file mode 100644 index 0000000..42912a3 Binary files /dev/null and b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR_CDS.nhr differ diff --git a/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR_CDS.nin b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR_CDS.nin new file mode 100644 index 0000000..47b5741 Binary files /dev/null and b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR_CDS.nin differ diff --git a/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR_CDS.not b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR_CDS.not new file mode 100644 index 0000000..933018d Binary files /dev/null and b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR_CDS.not differ diff --git a/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR_CDS.nsq b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR_CDS.nsq new file mode 100644 index 0000000..690eaa6 Binary files /dev/null and b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR_CDS.nsq differ diff --git a/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR_CDS.ntf b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR_CDS.ntf new file mode 100644 index 0000000..a40a744 Binary files /dev/null and b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR_CDS.ntf differ diff --git a/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR_CDS.nto b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR_CDS.nto new file mode 100644 index 0000000..6ce6e03 Binary files /dev/null and b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/AMR_CDS.nto differ diff --git a/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/database_format_version.txt b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/database_format_version.txt new file mode 100644 index 0000000..251b350 --- /dev/null +++ b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/database_format_version.txt @@ -0,0 +1 @@ +3.10.16 diff --git a/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/fam.tab b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/fam.tab new file mode 100644 index 0000000..a54e67d --- /dev/null +++ b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/fam.tab @@ -0,0 +1,1744 @@ +#node_id parent_node_id gene_symbol hmm_id hmm_tc1 hmm_tc2 blastrule_complete_ident blastrule_complete_wp_coverage blastrule_complete_br_coverage blastrule_partial_ident blastrule_partial_wp_coverage blastrule_partial_br_coverage reportable type subtype class subclass family_name +ACID STRESS - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS ACID +ALL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 +AME AMR - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR aminoglycoside modifying enzymes +AMR ALL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR +BIOCIDE STRESS - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS BIOCIDE +BcII bla-B1 bla2 NF033095.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM BcII family subclass B1 metallo-beta-lactamase +CDF_efflux METAL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL CDF family cation efflux transporter +CMY2-MIR-ACT-EC bla-C ampC NF012173.1 680.00 680.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM CMY2/MIR/ACT/EC family class C beta-lactamase +EFFLUX AMR - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR efflux +HARLDQ_not_B3 bla-B3 - NF000405.1 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR HARLDQ motif MBL-fold protein +HEAT STRESS - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS HEAT +HTH_5 METAL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL ArsR/SmtB family metalloregulatory transcriptional repressor +LHR_hdeD HEAT hdeD-GI - 0.00 0.00 90.00 90.00 90.00 93.00 90.00 25.00 1 STRESS HEAT heat resistance membrane protein HdeD-GI +LHR_hsp20A HEAT hsp20 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS HEAT small heat shock protein sHSP20 +LHR_hsp20B HEAT shsP - 0.00 0.00 93.00 90.00 90.00 94.00 90.00 25.00 1 STRESS HEAT small heat shock protein sHSP20-GI +LHR_kefB HEAT kefB-GI - 0.00 0.00 86.00 90.00 90.00 90.00 90.00 25.00 1 STRESS HEAT heat resistance system K+/H+ antiporter KefB-GI +LHR_psiE HEAT psi-GI - 0.00 0.00 88.00 90.00 90.00 90.00 90.00 25.00 1 STRESS HEAT heat resistance protein PsiE-GI +LHR_trx HEAT trxLHR - 0.00 0.00 85.00 90.00 90.00 90.00 90.00 25.00 1 STRESS HEAT heat resistance system thioredoxin Trx-GI +LHR_yfdX1 HEAT yfdX1 - 0.00 0.00 88.00 90.00 90.00 90.00 90.00 25.00 1 STRESS HEAT heat resistance protein YfdX1 +LHR_yfdX2 HEAT yfdX2 - 0.00 0.00 90.00 90.00 90.00 90.00 90.00 25.00 1 STRESS HEAT heat resistance protein YfdX2 +MATE_efflux EFFLUX - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR multidrug efflux MATE transporter +METAL-RND-IM METAL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL cation efflux RND transporter permease subunit +METAL STRESS - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL Metal Resistance +MFS_efflux_CHL MFS_efflux cml - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL chloramphenicol efflux MFS transporter +MFS_efflux_qac BIOCIDE qac NF000089.1 900.00 900.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM QacA/B family quaternary ammonium compound efflux MFS transporter +MFS_efflux EFFLUX - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR multidrug efflux MFS transporter +MerP_Gneg merP merP TIGR02052.1 92.55 92.55 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY MERCURY mercury resistance system periplasmic binding protein MerP +OM_sidero VIRULENCE_Ecoli - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE TonB-dependent siderophore receptor +P-type_ATPase METAL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL metal-translocating P-type ATPase +PERI-SENSOR METAL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL periplasmic heavy metal sensor +RESPONSE_REG AMR - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR DNA-binding response regulator +RND-IM EFFLUX - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR multidrug efflux RND transporter permease subunit +RND-OM EFFLUX - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR multidrug efflux transporter outer membrane subunit +RND-peri EFFLUX - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR multidrug efflux RND transporter periplasmic adaptor subunit +SMR_efflux_bcrB SMR_efflux bcrB NF033469.1 205.00 205.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE BACITRACIN BACITRACIN quaternary ammonium compound efflux SMR transporter BcrB +SMR_efflux_bcrC SMR_efflux bcrC NF033470.1 225.00 225.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE BACITRACIN BACITRACIN quaternary ammonium compound efflux SMR transporter BcrC +SMR_efflux_emrE SMR_efflux emrE NF000336.1 195.00 195.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS BIOCIDE EFFLUX EFFLUX multidrug efflux SMR transporter EmrE +SMR_efflux_smr SMR_efflux smr NF000280.1 200.00 200.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM multidrug efflux SMR transporter Smr +SMR_efflux BIOCIDE qac - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM SMR family small multidrug resistance efflux protein +SMR_qac_int SMR_efflux qac NF033137.0 188.00 188.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM Qac family quaternary ammonium compound efflux SMR transporter +SMR_qac_pB8 SMR_efflux qac NF000148.1 200.00 200.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM Qac-pB8 family quaternary ammonium compound efflux SMR transporter +STRESS ALL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS STRESS +VIRULENCE_Cdiff VIRULENCE - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE +VIRULENCE_Cperf VIRULENCE - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE +VIRULENCE_Ecoli VIRULENCE - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE +VIRULENCE_Saur VIRULENCE - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE +VIRULENCE ALL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE +aac(2')-IIa aac(2') aac(2')-IIa NF000100.2 510.00 510.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KASUGAMYCIN kasugamycin N-acetyltransferase AAC(2')-IIa +aac(2')-IIb aac(2') aac(2')-IIb NF033472.1 390.00 390.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KASUGAMYCIN kasugamycin N-acetyltransferase AAC(2')-IIb +aac(2')-Ia aac(2') aac(2')-Ia NF000108.1 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN/TOBRAMCYIN aminoglycoside N-acetyltransferase AAC(2')-Ia +aac(2')-Ib aac(2') aac(2')-Ib NF000010.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN/TOBRAMCYIN aminoglycoside N-acetyltransferase AAC(2')-Ib +aac(2')-Ic aac(2') aac(2')-Ic NF000034.1 375.00 375.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN/TOBRAMCYIN aminoglycoside N-acetyltransferase AAC(2')-Ic +aac(2')-Id aac(2') aac(2')-Id NF000042.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN/TOBRAMCYIN aminoglycoside N-acetyltransferase AAC(2')-Id +aac(2')-Ie aac(2') aac(2')-Ie NF000054.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN/TOBRAMCYIN aminoglycoside N-acetyltransferase AAC(2')-Ie +aac(2') aac aac(2') - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 2'-N-acetyltransferase +aac(3)-IIIa aac(3) aac(3)-IIIa - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 40.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-IIIa +aac(3)-IIIb aac(3) aac(3)-IIIb - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-IIIb +aac(3)-IIIc aac(3) aac(3)-IIIc - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-IIIc +aac(3)-IIa aac(3)-II aac(3)-IIa - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 50.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-IIa +aac(3)-IIb aac(3)-II aac(3)-IIb - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 50.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-IIb +aac(3)-IIc aac(3)-II aac(3)-IIc - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 50.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-IIc +aac(3)-IId aac(3)-II aac(3)-IId - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 50.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-IId +aac(3)-IIe aac(3)-II aac(3)-IIe - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 50.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-IIe +aac(3)-IIg aac(3)-II aac(3)-IIg - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 25.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-IIg +aac(3)-II aac(3) aac(3)-II NF033080.0 480.00 480.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN AAC(3)-II family aminoglycoside N-acetyltransferase +aac(3)-IVa aac(3)_IV_fam aac(3)-IVa - 0.00 0.00 98.00 90.00 97.00 99.00 95.00 45.00 2 AMR AMR AMINOGLYCOSIDE APRAMYCIN/GENTAMICIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(3)-IVa +aac(3)-IVb aac(3)_IV_fam aac(3)-IVb - 0.00 0.00 85.00 90.00 90.00 90.00 90.00 25.00 2 AMR AMR AMINOGLYCOSIDE APRAMYCIN/GENTAMICIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(3)-IVb +aac(3)-IXa aac(3) aac(3)-IXa - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside N-acetyltransferase AAC(3)-IXa +aac(3)-Ia aac(3)-I aac(3)-Ia - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 50.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-Ia +aac(3)-Ib aac(3)-I aac(3)-Ib - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 50.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-Ib +aac(3)-Ic aac(3)-I aac(3)-Ic - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 50.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-Ic +aac(3)-Id aac(3)-I aac(3)-Id - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 50.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-Id +aac(3)-If aac(3)-I aac(3)-If - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 50.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-If +aac(3)-Ig aac(3)-I aac(3)-Ig - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 25.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-Ig +aac(3)-Ih aac(3)-I aac(3)-Ih - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 50.00 1 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-Ih +aac(3)-Ii aac(3)-I aac(3)-Ii - 0.00 0.00 98.00 97.00 97.00 99.00 97.00 50.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-Ii +aac(3)-I aac(3)_gen aac(3)-I NF033083.0 200.00 200.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN AAC(3)-I family aminoglycoside 3-N-acetyltransferase +aac(3)-VIII aac(3) aac(3)-VIII NF033180.1 560.00 560.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside N-acetyltransferase AAC(3)-VIII +aac(3)-VIIa aac(3) aac(3)-VIIa - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside N-acetyltransferase AAC(3)-VIIa +aac(3)-VIa aac(3) aac(3)-VIa NF033612.0 675.00 675.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(3)-VIa +aac(3)-XI aac(3)_gen aac(3)-XI NF000482.1 300.00 300.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside N-acetyltransferase AAC(3)-XI +aac(3)-Xa aac(3) aac(3)-Xa - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside N-acetyltransferase AAC(3)-Xa +aac(3)_IV_fam aac(3)_gen aac(3)-IV NF033081.0 420.00 420.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN AAC(3)-IV family aminoglycoside N-acetyltransferase +aac(3)_gen aac aac(3) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside 3-N-acetyltransferase +aac(3) aac(3)_gen aac(3) NF033082.0 270.00 270.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside 3-N-acetyltransferase +aac(6')-29 aac(6') aac(6')-29 NF000050.2 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase AAC(6')-29 +aac(6')-30 aac(6') aac(6')-30 NF033077.0 255.00 255.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase AAC(6')-30 +aac(6')-31 aac(6')-set_A aac(6')-31 NF000118.3 385.00 385.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside N-acetyltransferase AAC(6')-31 +aac(6')-35 aac(6') aac(6')-35 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN aminoglycoside 6'-N-acetyltransferase AAC(6')-35 +aac(6')-III aac(6') aac(6')-III NF038102.1 305.00 305.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE TOBRAMYCIN tobramycin N-acetyltransferase AAC(6')-III +aac(6')-IIa aac(6')-II aac(6')-IIa - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN/KANAMYCIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(6')-IIa +aac(6')-IIc aac(6')-II aac(6')-IIc NF000135.2 415.00 415.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN/KANAMYCIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(6')-IIc +aac(6')-IId aac(6')-Ib-G aac(6')-IId - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside N-acetyltransferase AAC(6')-IId +aac(6')-II aac(6')-set_A aac(6')-II - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN/KANAMYCIN/TOBRAMYCIN AAC(6')-II family aminoglycoside 6'-N-acetyltransferase +aac(6')-Iad aac(6')-I aac(6')-Iad NF000115.2 275.00 275.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(6')-Iad +aac(6')-Iag aac(6') aacA48 NF033130.1 300.00 300.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN aminoglycoside 6'-N-acetyltransferase AAC(6')-Iag +aac(6')-Iak aac(6')_Steno aac(6')-Iak NF000497.1 325.00 325.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside N-acetyltransferase AAC(6')-Iak +aac(6')-Ian aac(6')-I aac(6')-Ian NF000431.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(6')-Ian +aac(6')-Ia aac(6')_Ia_fam aac(6')-Ia - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase AAC(6')-Ia +aac(6')-Ib'' aac(6')-Ib-KT aac(6')-Ib'' - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(6')-Ib'' +aac(6')-Ib' aac(6')-Ib-G aac(6')-Ib' - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN aminoglycoside N-acetyltransferase AAC(6')-Ib' +aac(6')-Ib-AGKT aac(6')-Ib aac(6')-Ib - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase +aac(6')-Ib-AKT aac(6')-Ib aac(6')-Ib - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase +aac(6')-Ib-D181Y aac(6')-Ib aac(6')-Ib - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase +aac(6')-Ib-G aac(6')-Ib aac(6')-Ib - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase +aac(6')-Ib-KT aac(6')-Ib aac(6')-Ib - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN/TOBRAMYCIN AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase +aac(6')-Ib-K aac(6')-Ib aac(6')-Ib - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase +aac(6')-Ib-W104R aac(6')-Ib aac(6')-Ib - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase +aac(6')-Ib-cr aac(6')-Ib aac(6')-Ib-cr - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE/QUINOLONE AMIKACIN/KANAMYCIN/QUINOLONE/TOBRAMYCIN fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr +aac(6')-Ib-generic aac(6')-Ib aac(6')-Ib - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase +aac(6')-Ib11 aac(6')-Ib-AGKT aac(6')-Ib11 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(6')-Ib11 +aac(6')-Ib aac(6')-set_A aac(6')-Ib NF033074.0 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase +aac(6')-Id aac(6')-I aac(6')-Id NF033374.6 320.00 320.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside N-acetyltransferase AAC(6')-Id +aac(6')-Ie2 aac(6')-Ie_fam aac(6')-Ie - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(6')-Ie +aac(6')-Ie_fam aac(6')-I aac(6')-Ie NF033693.0 340.00 340.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-Ie family aminoglycoside N-acetyltransferase +aac(6')-Ie aac(6')-Ie_fam aac(6')-Ie NF000507.1 450.00 420.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(6')-Ie +aac(6')-If aac(6')-I aac(6')-If NF000110.2 300.00 300.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(6')-If +aac(6')-Il aac(6')-I aac(6')-Il NF000158.2 270.00 270.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(6')-Il +aac(6')-Im aac(6')-I aac(6')-Im NF000016.1 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(6')-Im +aac(6')-Ip aac(6')_Ia_fam aac(6')-Ip NF000486.1 390.00 390.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase AAC(6')-Ip +aac(6')-Iq aac(6')_Ia_fam aac(6')-Iq - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN aminoglycoside 6'-N-acetyltransferase AAC(6')-Iq +aac(6')-Iz aac(6')_Steno aac(6')-Iz NF000138.1 320.00 320.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(6')-Iz +aac(6')-I aac(6') aac(6')-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-I family aminoglycoside 6'-N-acetyltransferase +aac(6')-set_A aac(6') aac(6') NF012165.0 280.00 280.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase +aac(6')-sk aac(6')_Strep aac(6')-kana - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase +aac(6')_Acine aac(6')-I aac(6')-I NF000224.3 225.00 225.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-Ighjkrstuvwx family aminoglycoside N-acetyltransferase +aac(6')_Entco aac(6') aac(6')-I NF000165.3 300.00 300.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase +aac(6')_Ia_fam aac(6') aac(6') NF033078.2 265.00 265.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE AAC(6')-Ia family aminoglycoside 6'-N-acetyltransferase +aac(6')_Serra aac(6') aac(6') NF000021.4 310.00 310.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase +aac(6')_Steno aac(6') aac(6') NF033075.0 290.00 290.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase +aac(6')_Strep aac(6') aac(6') NF000225.3 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase +aac(6')_Yersi aac(6') aac(6') NF033076.0 290.00 290.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase +aac(6') aac aac(6') - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN aminoglycoside 6'-N-acetyltransferase +aacA-ACI1 aac(6')_Acine aac(6')-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-Ighjkrstuvwx family aminoglycoside N-acetyltransferase +aacA-ACI2 aac(6')_Acine aac(6')-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-Ighjkrstuvwx family aminoglycoside N-acetyltransferase +aacA-ACI3 aac(6')_Acine aac(6')-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-Ighjkrstuvwx family aminoglycoside N-acetyltransferase +aacA-ACI4 aac(6')_Acine aac(6')-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-Ighjkrstuvwx family aminoglycoside N-acetyltransferase +aacA-ACI5 aac(6')_Acine aac(6')-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-Ighjkrstuvwx family aminoglycoside N-acetyltransferase +aacA-ACI6 aac(6')_Acine aac(6')-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-Ighjkrstuvwx family aminoglycoside N-acetyltransferase +aacA-ACI7 aac(6')_Acine aac(6')-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-Ighjkrstuvwx family aminoglycoside N-acetyltransferase +aacA-ENT1 aac(6')_Entco aac(6')-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase +aacA-ENT2 aac(6')_Entco aac(6')-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase +aacA-ENT3 aac(6')_Entco aac(6')-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase +aacA-ENT4 aac(6')_Entco aac(6')-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase +aacA-STR-10 aac(6')_Strep aac(6') - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase +aacA-STR-13 aac(6')_Strep aac(6') - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase +aacA-STR-15 aac(6')_Strep aac(6') - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase +aacA-STR-7 aac(6')_Strep aac(6') - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase +aacA10 aac(6')-I aacA10 NF033151.0 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN AAC(6')-I family aminoglycoside 6'-N-acetyltransferase +aacA32 aac(6')-set_A aacA32 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase +aacA34 aac(6') aacA34 NF000123.2 300.00 300.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase AacA34 +aacA37 aac(6') aacA37 NF000152.2 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase AacA37 +aacA38 aac(6')-set_A aacA38 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase AacA38 +aacA40 aac(6')-II aacA40 NF000048.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase AacA40 +aacA43 aac(6')_Ia_fam aacA43 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN/TOBRAMYCIN AAC(6')-Ia family aminoglycoside 6'-N-acetyltransferase AacA43 +aacA49 aac(6')_Ia_fam aacA49 NF033150.1 410.00 410.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE AAC(6')-Ia family aminoglycoside 6'-N-acetyltransferase AacA49 +aacA57-2 aacA57 aacA57-2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside N-acetyltransferase AAC(6')-Ian +aacA57 aac(6')-Ian aacA57 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN aminoglycoside N-acetyltransferase AAC(6')-Ian +aacA8 aac(6')-set_A aacA8 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside 6'-N-acetyltransferase AacA8 +aac AME aac - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside N-acetyltransferase +aad9 ant(9) aad9 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE ANT(9) family aminoglycoside nucleotidyltransferase +aadA10 ant(3'')-Ia aadA10 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA10 +aadA11 ant(3'')-Ia aadA11 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA11 +aadA12 ant(3'')-Ia aadA12 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA12 +aadA13 ant(3'')-Ia aadA13 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA13 +aadA15 ant(3'')-Ia aadA15 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA15 +aadA16 ant(3'')-Ia aadA16 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA16 +aadA1bt aadA1 aadA1bt - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1bt +aadA1 ant(3'')-Ia aadA1 NF033126.1 587.00 587.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1 +aadA21 ant(3'')-Ia aadA21 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA21 +aadA22 ant(3'')-Ia aadA22 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA22 +aadA25 ant(3'')-Ia aadA25 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA25 +aadA27 ant(3'')-II aadA27 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN/STREPTOMYCIN ANT(3'')-II family aminoglycoside nucleotidyltransferase AadA27 +aadA2 ant(3'')-Ia aadA2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2 +aadA31 ant(3'')-Ia aadA31 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA31 +aadA3 ant(3'')-Ia aadA3 NF033127.1 595.50 595.50 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA3 +aadA4 aadA_4_5 aadA4 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA4 +aadA5 aadA_4_5 aadA5 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA5 +aadA6 ant(3'')-Ia aadA6 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA6 +aadA7 ant(3'')-Ia aadA7 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA7 +aadA8 ant(3'')-Ia aadA8 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA8 +aadA9 ant(3'')-Ia aadA9 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA9 +aadA_4_5 ant(3'')-Ia aadA_4_5 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN/STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA +aadE-Cc ant(6) aadE-Cc NF033221.1 620.00 620.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside 6-adenylyltransferase AadE-Cc +aadE ant(6) aadE - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside 6-adenylyltransferase AadE +aadK ant(6) aadK NF000312.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside 6-adenylyltransferase AadK +aadS_fam ant6_gen aadS NF033387.1 450.00 450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN AadS family aminoglycoside 6-adenylyltransferase +aadS aadS_fam aadS - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside 6-adenylyltransferase AadS +aafA VIRULENCE_Ecoli aafA - 0.00 0.00 76.00 90.00 90.00 85.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria II major subunit AafA +aafB VIRULENCE_Ecoli aafB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria II minor subunit AafB +aafC VIRULENCE_Ecoli aafC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria II usher protein AafC +aafD VIRULENCE_Ecoli aafD - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria II chaperone AafD +aaiC VIRULENCE_Ecoli aaiC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE type VI secretion system protein AaiC/Hcp2 +aap VIRULENCE_Ecoli aap - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE dispersin Aap +aar VIRULENCE_Ecoli aar - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE AggR-activated transcriptional regulator Aar +aatA VIRULENCE_Ecoli aatA - 0.00 0.00 86.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE dispersin export ABC transporter outer membrane protein AatA +abaF MFS_efflux abaF - 0.00 0.00 71.00 90.00 90.00 96.00 84.00 25.00 1 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin efflux MFS transporter AbaF +abc-f AMR abc-f NF000355.3 450.00 440.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE ABC-F type ribosomal protection protein +abcf-produ abc-f abc-f NF000171.1 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE TlrC/CarA/OleB/SrmB family ABC-F type ribosomal protection protein +acr3_gen METAL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL ARSENIC ARSENITE Acr3 family arsenite efflux transporter +acr3 acr3_gen acr3 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENITE arsenite efflux transporter Acr3 +acrF RND-IM acrF - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter permease subunit AcrF +adeC-K-oprM RND-OM adeC - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor +adeC adeC-K-oprM adeC NF033142.1 975.00 975.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter AdeABC outer membrane channel subunit AdeC +adeD RND-peri adeD - 0.00 0.00 86.00 90.00 90.00 96.00 88.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter periplasmic adaptor subunit AdeD +adeE RND-IM adeE - 0.00 0.00 85.00 90.00 90.00 88.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter permease subunit AdeE +afaC VIRULENCE_Ecoli afaC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE AfaC-I/III family usher protein +agg3A VIRULENCE_Ecoli agg3A - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria 3 major subunit Agg3A +agg3B VIRULENCE_Ecoli agg3B - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria 3 minor subunit Agg3B +agg3C VIRULENCE_Ecoli agg3C - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria 3 usher protein Agg3C +agg3D VIRULENCE_Ecoli agg3D - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria 3 chaperone Agg3D +agg4A VIRULENCE_Ecoli agg4A - 0.00 0.00 80.00 90.00 90.00 85.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria 4 major subunit Agg4A/HdaA +agg4D VIRULENCE_Ecoli agg4D - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria 4 chaperone Agg4D/HdaD +agg5A VIRULENCE_Ecoli agg5A - 0.00 0.00 95.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria V major subunit Agg5A +aggA VIRULENCE_Ecoli aggA - 0.00 0.00 60.00 80.00 90.00 70.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria I major subunit AggA +aggB VIRULENCE_Ecoli aggB - 0.00 0.00 80.00 80.00 90.00 85.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria I minor subunit AggB +aggC VIRULENCE_Ecoli aggC - 0.00 0.00 80.00 80.00 90.00 85.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria I usher protein AggC +aggD VIRULENCE_Ecoli aggD - 0.00 0.00 80.00 80.00 90.00 85.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence fimbria I chaperone AggD +aggR VIRULENCE_Ecoli aggR - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE aggregative adherence transcriptional regulator AggR +air VIRULENCE_Ecoli air - 0.00 0.00 85.00 80.00 80.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE inverse autotransporter adhesin EaeX/Air +almG AMR almG - 0.00 0.00 80.00 80.00 90.00 85.00 90.00 25.00 1 AMR AMR COLISTIN COLISTIN glycine--lipid A transferase AlmG +alpha-1 alpha eae - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE INTIMIN ALPHA intimin type alpha +alpha-2 alpha eae - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE INTIMIN ALPHA intimin type alpha +alpha-5 alpha eae - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE INTIMIN NU intimin type nu +alpha-6 alpha eae - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE INTIMIN ZETA intimin type zeta +alpha-8 alpha eae - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE INTIMIN ALPHA intimin type alpha +alpha eae_typing_E._coli eae NF033639.1 2050.00 2050.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE INTIMIN ALPHA intimin type alpha +amvA MFS_efflux amvA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux MFS transporter AmvA +ant(2'')-Ia ant(2'') ant(2'')-Ia NF000064.3 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN/KANAMYCIN/TOBRAMYCIN aminoglycoside nucleotidyltransferase ANT(2'')-Ia +ant(2'') ant ant(2'') - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN/KANAMYCIN/TOBRAMYCIN ANT(2'') family aminoglycoside adenylyltransferase +ant(3'')-IIa ant(3'')-II ant(3'')-IIa - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN/STREPTOMYCIN aminoglycoside nucleotidyltransferase ANT(3'')-IIa +ant(3'')-IIb ant(3'')-II ant(3'')-IIb - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN/STREPTOMYCIN aminoglycoside nucleotidyltransferase ANT(3'')-IIb +ant(3'')-IIc ant(3'')-II ant(3'')-IIc - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN/STREPTOMYCIN aminoglycoside nucleotidyltransferase ANT(3'')-IIc +ant(3'')-II ant ant(3'')-II NF033220.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN/STREPTOMYCIN ANT(3'')-II family aminoglycoside nucleotidyltransferase +ant(3'')-Ia ant(3'')-I ant(3'')-Ia - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN/STREPTOMYCIN ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA +ant(3'')-Ib ant ant(3'')-Ib - 0.00 0.00 90.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN/STREPTOMYCIN aminoglycoside nucleotidyltransferase ANT(3'')-Ib +ant(3'')-Ih ant(3'')-I ant(3'')-Ih - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN/STREPTOMYCIN aminoglycoside nucleotidyltransferase ANT(3'')-Ih +ant(3'')-Ij ant(3'')-I ant(3'')-Ij - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN/STREPTOMYCIN aminoglycoside nucleotidyltransferase ANT(3'')-Ij +ant(3'')-I ant ant(3'') NF012157.0 375.00 375.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN/STREPTOMYCIN ANT(3'')-I family aminoglycoside nucleotidyltransferase +ant(4')-IIa ant(4')-II ant(4')-IIa - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN aminoglycoside nucleotidyltransferase ANT(4')-IIa +ant(4')-IIb ant(4')-II ant(4')-IIb - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN aminoglycoside nucleotidyltransferase ANT(4')-IIb +ant(4')-II ant(4') ant(4') NF028535.0 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN/TOBRAMYCIN ANT(4')-II family aminoglycoside nucleotidyltransferase +ant(4')-Ia ant(4')-I aadD1 NF000181.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN/TOBRAMYCIN aminoglycoside O-nucleotidyltransferase ANT(4')-Ia +ant(4')-Ib ant(4')-I aadD2 NF000079.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN/TOBRAMYCIN aminoglycoside O-nucleotidyltransferase ANT(4')-Ib +ant(4')-Ic ant(4')-I ant(4')-Ic - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN/TOBRAMYCIN aminoglycoside O-nucleotidyltransferase ANT(4')-Ic +ant(4')-I ant(4') ant(4')-I NF033061.1 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN/TOBRAMYCIN ANT(4')-I family aminoglycoside nucleotidyltransferase +ant(4') ant ant(4') - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN/TOBRAMYCIN ANT(4') family aminoglycoside nucleotidyltransferase +ant(6)-Ia ant(6) ant(6)-Ia - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside nucleotidyltransferase ANT(6)-Ia +ant(6)-Ib ant(6) ant(6)-Ib - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside nucleotidyltransferase ANT(6)-Ib +ant(6)-Ic ant(6) ant(6)-Ic - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside nucleotidyltransferase ANT(6)-Ic +ant(6) ant6_gen ant(6) NF033084.2 420.00 420.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside 6-nucleotidyltransferase +ant(9)-Ia ant(9) ant(9)-Ia - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN aminoglycoside nucleotidyltransferase ANT(9)-Ia +ant(9)-Ib ant(9) ant(9)-Ib - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN aminoglycoside nucleotidyltransferase ANT(9)-Ib +ant(9) ant ant(9) NF012212.0 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN ANT(9) family aminoglycoside nucleotidyltransferase +ant6_gen ant ant(6) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside 6-adenylyltransferase +ant AME ant - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside nucleotidyltransferase +aph(2'')-IIIa aph(2'') aph(2'')-IIIa NF000044.2 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN aminoglycoside O-phosphotransferase APH(2'')-IIIa +aph(2'')-IIa aph(2'') aph(2'')-IIa NF000015.3 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN aminoglycoside O-phosphotransferase APH(2'')-IIa +aph(2'')-IVa aph-Ie-IVa aph(2'')-IVa - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN aminoglycoside O-phosphotransferase APH(2'')-IVa +aph(2'')-I_a_f_h aph(2'') aph(2'')-I NF033692.1 475.00 475.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN APH(2'')-Ia/If/Ih family aminoglycoside O-phosphotransferase +aph(2'')-Ia aph(2'')-I_a_f_h aph(2'')-Ia NF000508.1 600.00 570.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN aminoglycoside O-phosphotransferase APH(2'')-Ia +aph(2'')-Ie aph-Ie-IVa aph(2'')-Ie - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN aminoglycoside O-phosphotransferase APH(2'')-Ie +aph(2'')-If2 aph(2'')-I_a_f_h aph(2'')-If2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN aminoglycoside O-phosphotransferase APH(2'')-If2 +aph(2'')-If_h aph(2'')-I_a_f_h aph(2'')-I NF000498.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN APH(2'')-If/Ih family aminoglycoside O-phosphotransferase +aph(2'')-If aph(2'')-If_h aph(2'')-If - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN aminoglycoside O-phosphotransferase APH(2'')-If +aph(2'')-Ig aph(2'') aph(2'')-Ig NF000132.2 620.00 620.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN aminoglycoside O-phosphotransferase APH(2'')-Ig +aph(2'')-Ih aph(2'')-If_h aph(2'')-Ih - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN aminoglycoside O-phosphotransferase APH(2'')-Ih +aph(2'') aph aph(2'') - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN APH(2'') family aminoglycoside O-phosphotransferase +aph(3'')-Ia aph(3'') aph(3'')-Ia NF032894.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside O-phosphotransferase APH(3'')-Ia +aph(3'')-Ib aph(3'') aph(3'')-Ib NF032895.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside O-phosphotransferase APH(3'')-Ib +aph(3'')-Ic aph(3'') aph(3'')-Ic - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside O-phosphotransferase APH(3'')-Ic +aph(3'') aph aph(3'') NF032896.1 325.00 325.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN APH(3'') family aminoglycoside O-phosphotransferase +aph(3')-II-therm aph(3')-II aph(3')-II - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN APH(3')-II family aminoglycoside O-phosphotransferase +aph(3')-IIIa aph(3') aph(3')-IIIa NF033064.0 530.00 530.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-IIIa +aph(3')-IIa aph(3')-II aph(3')-IIa - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-IIa +aph(3')-IIb aph(3')-II aph(3')-IIb - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-IIb +aph(3')-IIc aph(3')-II aph(3')-IIc - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-IIc +aph(3')-IId aph(3')-II aph(3')-IId - 0.00 0.00 88.00 90.00 90.00 92.00 90.00 25.00 1 AMR AMR AMINOGLYCOSIDE KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-IId +aph(3')-II aph(3') aph(3')-II NF032898.1 360.00 360.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN APH(3')-II family aminoglycoside O-phosphotransferase +aph(3')-IVa aph(3') aph(3')-IVa NF033065.0 530.00 530.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-IVa +aph(3')-IX aph(3') aph(3')-IX - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN APH(3') family aminoglycoside O-phosphotransferase +aph(3')-Ia aph(3')-I aph(3')-Ia - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-Ia +aph(3')-Ib aph(3')-I aph(3')-Ib - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-Ib +aph(3')-Id aph(3')-I aph(3')-Id - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-Id +aph(3')-I aph(3') aph(3')-I NF033059.2 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN/KANAMYCIN APH(3')-I family aminoglycoside O-phosphotransferase +aph(3')-VIIIa aph(3')-VIII aph(3')-VIIIa - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-VIIIa +aph(3')-VIIIb aph(3')-VIII aph(3')-VIIIb - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-VIIIb +aph(3')-VIII aph(3') aph(3')-VIII NF033066.0 520.00 520.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-VIII +aph(3')-VIIa aph(3') aph(3')-VIIa NF033067.1 530.00 530.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-VIIa +aph(3')-VIa aph(3')-VI aph(3')-VIa - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-VIa +aph(3')-VIb aph(3')-VI aph(3')-VIb - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-VIb +aph(3')-VI aph(3') aph(3')-VI NF033062.0 525.00 525.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN APH(3')-VI family aminoglycoside O-phosphotransferase +aph(3')-Va aph(3')-V aph(3')-Va - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside O-phosphotransferase APH(3')-Va +aph(3')-Vb aph(3')-V aph(3')-Vb - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside O-phosphotransferase APH(3')-Vb +aph(3')-Vc aph(3')-V aph(3')-Vc - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside O-phosphotransferase APH(3')-Vc +aph(3')-V aph(3') aph(3')-V NF032897.1 450.00 450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE APH(3')-V family aminoglycoside O-phosphotransferase +aph(3')-XV aph(3') aph(3')-XV NF033063.0 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN aminoglycoside O-phosphotransferase APH(3')-XV +aph(3') aph aph(3') NF033068.1 205.00 205.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE APH(3') family aminoglycoside O-phosphotransferase +aph(4)-Ia aph(4)-I aph(4)-Ia NF000107.2 725.00 725.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE HYGROMYCIN aminoglycoside O-phosphotransferase APH(4)-Ia +aph(4)-I aph aph(4)-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE HYGROMYCIN APH(4)-I family aminoglycoside O-phosphotransferase +aph(6)-Ia aph(6)-I aph(6)-Ia - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside O-phosphotransferase APH(6)-Ia +aph(6)-Ib aph(6)-I aph(6)-Ib - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside O-phosphotransferase APH(6)-Ib +aph(6)-Ic_gen aph(6)-I aph(6)-I NF033614.1 460.00 460.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN APH(6)-I family aminoglycoside O-phosphotransferase +aph(6)-Ic aph(6)-Ic_gen aph(6)-Ic NF000011.2 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside O-phosphotransferase APH(6)-Ic +aph(6)-Id aph(6)-I aph(6)-Id - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN aminoglycoside O-phosphotransferase APH(6)-Id +aph(6)-I aph aph(6)-I NF012171.0 325.00 325.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN APH(6)-I family aminoglycoside O-phosphotransferase +aph(6)-Smalt aph(6)-I aph(6) NF012160.0 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE APH(6) family putative aminoglycoside O-phosphotransferase +aph(7'')-Ia aph aph(7'')-Ia NF000137.2 640.00 640.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE HYGROMYCIN aminoglycoside O-phosphotransferase APH(7'')-Ia +aph(9)-Ia aph(9)-I aph(9)-Ia NF000052.4 680.00 680.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN aminoglycoside O-phosphotransferase APH(9)-Ia +aph(9)-Ib aph(9)-I aph(9)-Ib NF000029.2 675.00 675.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN aminoglycoside O-phosphotransferase APH(9)-Ib +aph(9)-I aph aph(9)-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN APH(9)-I family aminoglycoside O-phosphotransferase +aph-Ie-IVa aph(2'') aph(2'') NF000076.3 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/GENTAMICIN/KANAMYCIN/TOBRAMYCIN APH(2'')-Ie/IVa family aminoglycoside O-phosphotransferase +aphA16 aph(3') aphA16 NF033112.0 580.00 580.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMIKACIN/KANAMYCIN APH(3') family aminoglycoside O-phosphotransferase AphA16 +aph AME aph - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE aminoglycoside O-phosphotransferase +apmA AMR apmA NF000084.1 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE APRAMYCIN aminocyclitol acetyltransferase ApmA +ariR ACID ymgB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS ACID biofilm/acid-resistance regulator AriR +armA rmt armA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN ArmA family 16S rRNA (guanine(1405)-N(7))-methyltransferase +arr-2b arr arr NF000066.1 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMYCIN NAD(+)--rifampin ADP-ribosyltransferase +arr-3 arr arr-3 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMYCIN NAD(+)--rifampin ADP-ribosyltransferase Arr-3 +arr-6 arr arr - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMYCIN NAD(+)--rifampin ADP-ribosyltransferase Arr-6 +arr-Msmeg arr arr NF000318.1 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMYCIN NAD(+)--rifampin ADP-ribosyltransferase Arr-2b +arr AMR arr NF033144.1 130.00 130.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMYCIN NAD(+)--rifampin ADP-ribosyltransferase +arsA METAL arsA - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENITE arsenite efflux transporter ATPase subunit ArsA +arsB_Lm acr3_gen arsB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENITE arsenite efflux transporter membrane subunit ArsB +arsB_R773 arsB arsB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENITE arsenite efflux transporter membrane subunit ArsB +arsB_pI258 arsB arsB NF033877.0 760.00 760.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL ARSENIC ARSENITE arsenite efflux transporter membrane subunit ArsB +arsB_pKW301 arsB arsB - 0.00 0.00 96.00 90.00 90.00 98.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENITE arsenite efflux transporter membrane subunit ArsB +arsB_pYV arsB arsB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENITE arsenite efflux transporter membrane subunit ArsB +arsB METAL arsB - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL ARSENIC ARSENITE arsenite efflux transporter membrane subunit ArsB +arsC_gluta METAL arsC NF007456.1 242.00 242.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL ARSENIC ARSENATE glutaredoxin-dependent arsenate reductase +arsC_thio METAL arsC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL ARSENIC ARSENATE thioredoxin-dependent arsenate reductase +arsD_like METAL arsD2 - 0.00 0.00 70.00 90.00 90.00 80.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENITE arsenite efflux transporter metallochaperone ArsD-related protein +arsD METAL arsD NF033727.1 95.00 95.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL ARSENIC ARSENITE arsenite efflux transporter metallochaperone ArsD +arsH METAL arsH - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENIC arsenic resistance NADPH-dependent reductase ArsH +arsN1a arsN_gen arsN1 NF040503.1 170.00 170.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL ARSENIC ARSENIC arsinothricin resistance N-acetyltransferase ArsN1 family A +arsN1b arsN_gen arsN1 NF040504.1 210.00 210.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL ARSENIC ARSENIC arsinothricin resistance N-acetyltransferase ArsN1 family B +arsN2 arsN_gen arsN2 NF040501.1 125.00 125.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL ARSENIC ARSENIC arsenic resistance N-acetyltransferase ArsN2 +arsN_gen METAL arsN - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL ARSENIC ARSENIC ArsN family N-acetyltransferase +arsP METAL arsP - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL ARSENIC ORGANOARSENIC organoarsenical efflux permease ArsP +arsR_K-12 arsR arsR - 0.00 0.00 87.00 90.00 90.00 95.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENIC As(III)-sensing metalloregulatory transcriptional repressor ArsR +arsR_LGI2_1 arsR arsR - 0.00 0.00 87.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENITE As(III)-sensing metalloregulatory transcriptional repressor ArsR +arsR_LGI2_2 arsR arsR - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENITE As(III)-sensing metalloregulatory transcriptional repressor ArsR +arsR_R46 arsR arsR - 0.00 0.00 88.00 90.00 90.00 94.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENIC As(III)-sensing metalloregulatory transcriptional repressor ArsR +arsR_Tn7102 arsR arsR - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENITE As(III)-sensing metalloregulatory transcriptional repressor ArsR +arsR_pI258 arsR arsR - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENIC As(III)-sensing metalloregulatory transcriptional repressor ArsR +arsR_pKW301 arsR_R46 arsR - 0.00 0.00 88.00 90.00 90.00 94.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENIC As(III)-sensing metalloregulatory transcriptional repressor ArsR +arsR_pSX267 arsR arsR - 0.00 0.00 92.00 90.00 90.00 94.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENIC As(III)-sensing metalloregulatory transcriptional repressor ArsR +arsR_pYV arsR arsR - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL ARSENIC ARSENIC As(III)-sensing metalloregulatory transcriptional repressor ArsR +arsR HTH_5 arsR - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL ARSENIC ARSENITE As(III)-sensing metalloregulatory transcriptional repressor ArsR +asr ACID asr NF033636.1 50.00 40.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS ACID acid resistance repetitive basic protein Asr +astA VIRULENCE_Ecoli astA NF033646.1 80.00 80.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE heat-stable enterotoxin EAST1 +aur VIRULENCE_Saur aur - 0.00 0.00 88.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE zinc metalloproteinase aureolysin +auto_tox VIRULENCE_Ecoli - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE SPATE family serine protease autotransporter +bcrA_Lm AMR bcrA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR BACITRACIN BACITRACIN bacitracin resistance ABC transporter ATP-binding subunit BcrA +becA VIRULENCE_Cperf becA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE ADP-ribosylating binary toxin enzymatic subunit BecA +becB VIRULENCE_Cperf becB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE ADP-ribosylating binary toxin binding subunit BecB +bepC RND-OM bepC - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter outer membrane subunit BepC +bepD RND-peri bepD - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter periplasmic adaptor subunit BepD +bepE RND-IM bepE - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter permease subunit BepE +bepF RND-peri bepF - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter periplasmic adaptor subunit BepF +bepG RND-IM bepG - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter permease subunit BepG +beta-1 beta eae - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 60.00 1 VIRULENCE VIRULENCE INTIMIN BETA intimin type beta +beta-2 beta eae - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 60.00 1 VIRULENCE VIRULENCE INTIMIN BETA intimin type beta +beta-4 beta eae - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 60.00 1 VIRULENCE VIRULENCE INTIMIN KAPPA intimin type kappa +beta eae_typing_E._coli eae - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 60.00 1 VIRULENCE VIRULENCE INTIMIN BETA intimin type beta +bexA MATE_efflux bexA - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux MATE transporter BexA +bfpA pilus bfpA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE bundle-forming pilus major subunit BfpA +bin_CdtA VIRULENCE_Cdiff cdtA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE ADP-ribosylating binary toxin enzymatic subunit CdtA +bin_CdtB VIRULENCE_Cdiff cdtB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE ADP-ribosylating binary toxin binding subunit CdtB +bind_CopB multi_Cu_ox copB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL COPPER COPPER copper-binding protein CopB +bla-A2 bla-A bla NF012099.1 320.00 320.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A beta-lactamase, subclass A2 +bla-A_Chryseo bla-A2 bla-A NF000447.2 510.00 510.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM CGA/CIA family class A beta-lactamase +bla-A_carba bla-A bla NF000538.0 410.00 410.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM carbapenem-hydrolyzing class A beta-lactamase +bla-A_firm bla-A bla NF012167.0 427.00 427.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A beta-lactamase +bla-A bla bla NF033103.1 200.00 200.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A beta-lactamase +bla-B1-FLAV blaB-IND-MUS bla-B1-FLAV NF000450.2 450.00 450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM subclass B1 metallo-beta-lactamase +bla-B1 bla-B bla NF033088.2 200.00 200.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM subclass B1 metallo-beta-lactamase +bla-B2 bla-B bla NF033087.1 240.00 240.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM subclass B2 metallo-beta-lactamase +bla-B3-CAR bla-B blaCAR NF000469.2 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM CAR family subclass B3 metallo-beta-lactamase +bla-B3 bla-B bla NF033105.1 240.00 240.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM subclass B3 metallo-beta-lactamase +bla-B bla bla NF012229.1 100.00 100.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM metallo-beta-lactamase +bla-C bla ampC NF033085.1 415.00 415.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class C beta-lactamase +bla-D-Gpos blaOXA blaOXA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM BPU/BAT/BSU family class D beta-lactamase +bla-D bla blaOXA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class D beta-lactamase +bla1 bla-A_firm bla NF033096.1 630.00 630.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A beta-lactamase Bla1 +bla2a bla-A bla2a NF033099.1 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM Exo family class A beta-lactamase +blaAAK blaSHV-LEN blaAAK NF038195.1 655.00 655.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM AAK family class A beta-lactamase +blaACC bla-C blaACC NF000397.2 850.00 850.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN ACC family cephalosporin-hydrolyzing class C beta-lactamase +blaACI bla-A blaACI NF000448.2 640.00 640.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN ACI family class A beta-lactamase +blaACT CMY2-MIR-ACT-EC blaACT NF000385.4 810.00 810.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN ACT family cephalosporin-hydrolyzing class C beta-lactamase +blaADC-8_fam bla-C blaADC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN ADC-like cephalosporin-hydrolyzing class C beta-lactamase +blaADC bla-C blaADC NF000425.2 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN ADC family extended-spectrum class C beta-lactamase +blaAER bla-A blaAER - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM AER family class A beta-lactamase +blaAFM bla-B1 blaAFM NF033736.1 610.00 610.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM AFM family subclass B1 metallo-beta-lactamase +blaAIM bla-B3 blaAIM NF000439.2 675.00 675.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM AIM family subclass B3 metallo-beta-lactamase +blaALG11 bla-B3 blaALG11 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM ALG11 family subclass B3 metallo-beta-lactamase +blaALG6 bla-B3 blaALG6 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM ALG6 family subclass B3 metallo-beta-lactamase +blaALI bla-B1 blaALI NF033582.2 450.00 450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM ALI family subclass B1 metallo-beta-lactamase +blaANA bla-B1 blaANA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM ANA family subclass B1 metallo-beta-lactamase +blaAQU blaCMY-FOX blaAQU NF033467.0 815.00 815.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM AQU family class C beta-lactamase +blaARL bla-A blaARL NF033386.1 620.00 620.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM ARL family class A beta-lactamase +blaAST bla-A blaAST - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM AST family class A beta-lactamase +blaASU1 bla-A blaASU1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM ASU1 family class A beta-lactamase +blaAXC bla-A blaAXC NF033929.1 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM AXC family carbapenem-hydrolyzing class A beta-lactamase +blaA_Mtub bla-A blaA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A beta-lactamase BlaA +blaA_Yent bla-A blaA NF033152.0 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A beta-lactamase BlaA +blaB-IND-MUS bla-B1 bla NF012146.1 270.00 270.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM BlaB/IND/MUS family subclass B1 metallo-beta-lactamase +blaB3SU1 bla-B3 blaB3SU1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM B3SU1 family subclass B3 metallo-beta-lactamase +blaB3SU2 bla-B3 blaB3SU2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM B3SU2 family subclass B3 metallo-beta-lactamase +blaBAT bla-D-Gpos blaBAT - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM BAT family class D beta-lactamase +blaBBI bla-A_firm blaBBI NF033714.1 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM BBI family class A beta-lactamase +blaBCL bla-A_firm blaBCL NF033060.0 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM BCL family class A beta-lactamase +blaBEL bla-A blaBEL NF000398.2 620.00 620.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN BEL family class A extended-spectrum beta-lactamase +blaBES bla-A blaBES NF000451.2 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN BES family class A beta-lactamase +blaBIC bla-A_carba blaBIC NF000449.2 640.00 640.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM BIC family carbapenem-hydrolyzing class A beta-lactamase +blaBJP bla-B3 blaBJP NF012140.0 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM BJP family subclass B3 metallo-beta-lactamase +blaBKC_GPC bla-A bla NF033626.2 575.00 575.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM BKC/GPC family carbapenem-hydrolyzing class A beta-lactamase +blaBKC blaBKC_GPC blaBKC NF000413.2 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM BKC family carbapenem-hydrolyzing class A beta-lactamase +blaBPU bla-D-Gpos blaBPU NF012098.1 525.00 525.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM BPU family class D beta-lactamase +blaBRO bla-A blaBRO - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM BRO family class A beta-lactamase +blaBSU bla-D-Gpos blaBSU - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM BSU family class D beta-lactamase +blaBUT CMY2-MIR-ACT-EC blaBUT NF038238.1 850.00 850.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM BUT family class C beta-lactamase +blaB blaB-IND-MUS blaB NF033107.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM BlaB family subclass B1 metallo-beta-lactamase +blaCAM blaB-IND-MUS blaCAM NF033895.1 535.00 535.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM CAM family subclass B1 metallo-beta-lactamase +blaCARB_gen bla-A blaCARB NF000481.1 430.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM CARB/PSE/RTG family carbenicillin-hydrolyzing class A beta-lactamase +blaCARB blaCARB_gen blaCARB NF000188.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM CARB family carbenicillin-hydrolyzing class A beta-lactamase +blaCAU/MBL1b bla-B3 blaCAU NF000427.2 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM CAU/MBL1b family subclass B3 metallo-beta-lactamase +blaCBP bla-A blaCBP NF000517.2 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM CBP family penicillin-hydrolyzing class A beta-lactamase +blaCDD bla-D blaCDD NF033866.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM CDD family class D beta-lactamase +blaCFE blaCMY blaCFE - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN CMY-2 family cephalosporin-hydrolyzing class C beta-lactamase +blaCGA bla-A_Chryseo blaCGA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN CGA family class A extended-spectrum beta-lactamase +blaCIA bla-A_Chryseo blaCIA NF000446.2 640.00 640.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN CIA family class A extended-spectrum beta-lactamase +blaCKO bla-A blaCKO - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM MAL/CKO family class A beta-lactamase +blaCMA blaCrA blaCMA NF033700.1 887.00 887.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOTHIN CMA family class C beta-lactamase +blaCME bla-A2 blaCME NF000511.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM CME family class A extended-spectrum beta-lactamase +blaCMH blaACT blaCMH NF000419.2 875.00 875.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM CMH family class C beta-lactamase +blaCMY-FOX bla-C ampC NF012172.1 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM FOX/MOX family class C beta-lactamase +blaCMY CMY2-MIR-ACT-EC blaCMY NF000191.1 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN CMY-2 family class C beta-lactamase +blaCPS bla-B3 blaCPS NF000454.2 620.00 620.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM CPS family subclass B3 metallo-beta-lactamase +blaCRD3 bla-B3 blaCRD3 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM CRD3 family subclass B3 metallo-beta-lactamase +blaCRH bla-A_carba blaCRH NF033211.1 630.00 630.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM CRH family carbapenem-hydrolyzing class A beta-lactamase +blaCRP bla-A_carba blaCRP NF040548.1 630.00 630.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM CRP family carbapenem-hydrolyzing class A beta-lactamase +blaCSA blaCrA blaCSA NF033698.1 884.00 884.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOTHIN CSA family class C beta-lactamase +blaCSP bla-A2 blaCSP - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN CSP family class A beta-lactamase +blaCTX-M-151_fam bla-A blaCTX-M - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN CTX-M-151 family class A beta-lactamase +blaCTX-M bla-A blaCTX-M NF033089.1 570.00 570.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN CTX-M family class A extended-spectrum beta-lactamase +blaCVI bla-B2 blaCVI NF038046.1 575.00 575.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM CVI family subclass B2 metallo-beta-lactamase +blaCrA bla-C ampC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM CrA family class C beta-lactamase +blaDES bla-A blaDES - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM DES family class A beta-lactamase +blaDHA bla-C blaDHA NF012102.1 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN DHA family class C beta-lactamase +blaDHT2 bla-B3 blaDHT2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM DHT2 family subclass B3 metallo-beta-lactamase +blaDIM-SIM-IMP bla-B1 blaDIM NF012145.1 288.00 288.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM DIM/SIM/IMP family subclass B1 metallo-beta-lactamase +blaDIM blaDIM-SIM-IMP blaDIM NF000445.2 560.00 560.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM DIM family subclass B1 metallo-beta-lactamase +blaEAM bla-B3 blaEAM NF040470.1 660.00 660.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN EAM family subclass B3 metallo-beta-lactamase +blaEBR blaB-IND-MUS blaEBR NF000444.2 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM EBR family subclass B1 metallo-beta-lactamase +blaECM bla-B3 blaECM NF040468.1 640.00 640.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN ECM family subclass B3 metallo-beta-lactamase +blaECV bla-B1 blaECV - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM ECV family subclass B1 metallo-beta-lactamase +blaEC CMY2-MIR-ACT-EC blaEC NF000185.2 850.00 850.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR BETA-LACTAM BETA-LACTAM BlaEC family class C beta-lactamase +blaEFM bla-B3 blaEFM NF040469.1 610.00 610.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM EFM family subclass B3 metallo-beta-lactamase +blaELM bla-B3 blaELM - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM ELM family subclass B3 metallo-beta-lactamase +blaERP bla-A blaERP - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM ERP family class A beta-lactamase +blaESP bla-B3 blaESP NF000455.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM ESP-1 family subclass B3 metallo-beta-lactamase +blaEVM bla-B3 blaEVM - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN EVM family subclass B3 metallo-beta-lactamase +blaE bla-C blaE - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class C beta-lactamase +blaFAR bla-A blaFAR - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM FAR family class A beta-lactamase +blaFEZ bla-B3 blaFEZ NF000216.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM FEZ family subclass B3 metallo-beta-lactamase +blaFIA bla-B1 blaFIA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM FIA family subclass B1 metallo-beta-lactamase +blaFIM bla-B1 blaFIM NF000437.2 590.00 590.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM FIM family subclass B1 metallo-beta-lactamase +blaFONA bla-A blaFONA NF000323.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM FONA family class A beta-lactamase +blaFOX blaCMY-FOX blaFOX NF000399.2 850.00 850.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN FOX family cephalosporin-hydrolyzing class C beta-lactamase +blaFPH bla-A blaFPH - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM FPH family carbapenem-hydrolyzing class A beta-lactamase +blaFRI bla-A_carba blaFRI NF000428.4 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM FRI family carbapenem-hydrolyzing class A beta-lactamase +blaFTU bla-A blaFTU NF000513.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM FTU family class A beta-lactamase +blaF bla-A blaF - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A beta-lactamase +blaGES bla-A blaGES NF012103.0 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN GES family class A beta-lactamase +blaGIL bla-A blaGIL NF000505.2 640.00 640.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM GIL family class A beta-lactamase +blaGIM blaDIM-SIM-IMP blaGIM NF000396.2 540.00 540.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM GIM family subclass B1 metallo-beta-lactamase +blaGMB bla-B1 blaGMB NF038103.1 580.00 580.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM GMB family subclass B1 metallo-beta-lactamase +blaGOB bla-B3 blaGOB NF012101.1 560.00 560.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM GOB family subclass B3 metallo-beta-lactamase +blaGPC blaBKC_GPC blaGPC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM GPC family carbapenem-hydrolyzing class A beta-lactamase +blaGRD23 blaDIM-SIM-IMP blaGRD23 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM GRD23 family subclass B1 metallo-beta-lactamase +blaGRD33 bla-B3 blaGRD33 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM GRD33 family subclass B3 metallo-beta-lactamase +blaHER bla-A blaHER - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM HER family class A beta-lactamase +blaHMB blaKHM-HMB blaHMB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM HMB family subclass B1 metallo-beta-lactamase +blaIDC bla-C blaIDC NF038069.1 850.00 850.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM IDC family class C beta-lactamase +blaIMI bla-A_carba blaIMI NF000400.2 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM IMI family carbapenem-hydrolyzing class A beta-lactamase +blaIMP blaDIM-SIM-IMP blaIMP NF012147.1 460.00 460.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM IMP family subclass B1 metallo-beta-lactamase +blaIND blaB-IND-MUS blaIND NF012149.0 430.00 430.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM IND family subclass B1 metallo-beta-lactamase +blaI_gen AMR blaI - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR BETA-LACTAM BETA-LACTAM beta-lactamase repressor +blaI_of_Z blaI_gen blaI NF000186.1 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM penicillinase repressor BlaI +blaJOHN bla-B1-FLAV blaJOHN - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM JOHN family subclass B1 metallo-beta-lactamase +blaKHM-HMB blaDIM-SIM-IMP blaKHM-HMB NF012148.0 450.00 450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM KHM/HMB family subclass B1 metallo-beta-lactamase +blaKHM blaKHM-HMB blaKHM - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM KHM family subclass B1 metallo-beta-lactamase +blaKLUC blaCTX-M blaKLUC NF000452.2 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN KLUC family class A extended-spectrum beta-lactamase +blaKPC bla-A_carba blaKPC NF012141.0 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM KPC family carbapenem-hydrolyzing class A beta-lactamase +blaL1 bla-B3 blaL1 NF033106.1 560.00 560.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM L1 family subclass B3 metallo-beta-lactamase +blaL2 bla-A blaL2 NF000232.1 540.00 540.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM L2 family class A beta-lactamase +blaLAP bla-A blaLAP NF000383.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LAP family class A beta-lactamase +blaLAQ CMY2-MIR-ACT-EC blaLAQ NF040478.1 850.00 850.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LAQ family class C beta-lactamase +blaLAT blaCMY blaLAT - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN cephalosporin-hydrolyzing class C beta-lactamase +blaLCR_NPS blaOXA blaLCR - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LCR/NPS family class D beta-lactamase +blaLCR blaLCR_NPS blaLCR - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LCR family class D beta-lactamase +blaLEN blaSHV-LEN blaLEN NF000233.2 640.00 640.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LEN family class A beta-lactamase +blaLHK bla-C blaLHK NF033569.1 850.00 850.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LHK family class C beta-lactamase +blaLMB bla-B3 blaLMB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM LMB family subclass B3 metallo-beta-lactamase +blaLRA-10_fam bla-C blaLRA10 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA10 family class C beta-lactamase +blaLRA-12_fam bla-B3 blaLRA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA12 family subclass B3 metallo-beta-lactamase +blaLRA-12 blaLRA-12_fam blaLRA12 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA12 family subclass B3 metallo-beta-lactamase +blaLRA-13 bla-C blaLRA13 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA13 family bifunctional class D/class C beta-lactamase +blaLRA-17 blaLRA-12_fam blaLRA17 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA17 family subclass B3 metallo-beta-lactamase +blaLRA-18_fam bla-C blaLRA18 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA18 family class C beta-lactamase +blaLRA-19 blaLRA-12_fam blaLRA19 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA19 family subclass B3 metallo-beta-lactamase +blaLRA-1 bla-A blaLRA1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA1 family class A beta-lactamase +blaLRA-2_fam bla-B3 blaLRA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA2 family subclass B3 metallo-beta-lactamase +blaLRA-2 blaLRA-2_fam blaLRA2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA2 family subclass B3 metallo-beta-lactamase +blaLRA-3_fam bla-B3 blaLRA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA3 family subclass B3 metallo-beta-lactamase +blaLRA-3 blaLRA-3_fam blaLRA3 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA3 family subclass B3 metallo-beta-lactamase +blaLRA-5 bla-A blaLRA5 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA5 family class A beta-lactamase +blaLRA-7 blaLRA-3_fam blaLRA7 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA7 family subclass B3 metallo-beta-lactamase +blaLRA-8 blaLRA-2_fam blaLRA8 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA8 family subclass B3 metallo-beta-lactamase +blaLRA-9 blaLRA-3_fam blaLRA9 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LRA9 family subclass B3 metallo-beta-lactamase +blaLRG bla-A blaLRG - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN LRG family class A beta-lactamase +blaLUS bla-A2 blaLUS - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM LUS family class A beta-lactamase +blaLUT bla-A blaLUT NF000324.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN LUT family class A beta-lactamase +blaL bla-A blaL NF033101.0 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM BlaL family class A beta-lactamase +blaM-1 blaM blaM - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A beta-lactamase +blaMCA bla-C blaMCA NF033406.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM MCA family class C beta-lactamase +blaMIR blaACT blaMIR NF000187.3 882.00 882.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN MIR family cephalosporin-hydrolyzing class C beta-lactamase +blaMOC blaMUS-TUS-MOC blaMOC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM XUS family subclass B1 metallo-beta-lactamase +blaMOX blaCMY-FOX blaMOX NF000239.3 770.00 770.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN CMY-1/MOX family class C beta-lactamase +blaMSI-1_fam bla-B3 blaMSI NF000456.2 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM MSI-1 family subclass B3 metallo-beta-lactamase +blaMUS-TUS-MOC blaB-IND-MUS bla NF012137.0 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM MUS/TUS/MOC family subclass B1 metallo-beta-lactamase +blaMUS blaMUS-TUS-MOC blaMUS NF000441.2 540.00 540.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM MUS family subclass B1 metallo-beta-lactamase +blaMYO bla-B1 blaMYO - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM MYO family subclass B1 metallo-beta-lactamase +blaMYX bla-B1 blaMYX - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM MYX family subclass B1 metallo-beta-lactamase +blaM bla-A blaM - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A beta-lactamase +blaNDM bla-B1 blaNDM NF000259.2 580.00 580.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM NDM family subclass B1 metallo-beta-lactamase +blaNPS blaLCR_NPS blaNPS - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM NPS family class D beta-lactamase +blaOCH bla-C blaOCH NF000264.2 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN OCH family class C extended-spectrum beta-lactamase +blaOHIO blaSHV-LEN blaOHIO - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN OHIO family class A beta-lactamase +blaOKP-A blaOKP blaOKP-A - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OKP-A family class A broad-spectrum beta-lactamase +blaOKP-B blaOKP blaOKP-B - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OKP-B family class A broad-spectrum beta-lactamase +blaOKP-C blaSHV-LEN blaOKP-C - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OKP-C family class A broad-spectrum beta-lactamase +blaOKP-D blaSHV-LEN blaOKP-D - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OKP-D family class A broad-spectrum beta-lactamase +blaOKP blaSHV-LEN blaOKP NF000265.2 620.00 620.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OKP family class A broad-spectrum beta-lactamase +blaORN blaPLA-ORN-TER blaORN NF038401.1 670.00 670.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM ORN family class A beta-lactamase +blaORR bla-B1 blaORR - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM ORR family subclass B1 metallo-beta-lactamase +blaOXA-1036_fam blaOXA blaOXA NF040529.1 580.00 580.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM OXA-1036 family class D beta-lactamase +blaOXA-10_fam blaOXA blaOXA NF000386.2 580.00 580.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-10 family class D beta-lactamase +blaOXA-114_fam blaOXA-PR blaOXA NF033818.0 620.00 620.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-114 family class D beta-lactamase +blaOXA-12_fam blaOXA-PR blaOXA NF033702.0 595.00 595.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-12 family class D beta-lactamase +blaOXA-134_fam blaOXA blaOXA NF000436.2 570.00 570.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-134 family carbapenem-hydrolyzing class D beta-lactamase +blaOXA-143_fam blaOXA blaOXA NF000464.2 610.00 610.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-143 family carbapenem-hydrolyzing class D beta-lactamase +blaOXA-184_fam blaOXA_Campy blaOXA NF000461.2 475.00 475.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-184 family class D beta-lactamase +blaOXA-1_fam blaOXA blaOXA NF000388.2 580.00 580.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-1 family class D beta-lactamase +blaOXA-211_fam blaOXA blaOXA NF000417.2 575.00 575.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-211 family carbapenem-hydrolyzing class D beta-lactamase +blaOXA-213_fam blaOXA blaOXA NF000269.2 560.00 560.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-213 family carbapenem-hydrolyzing class D beta-lactamase +blaOXA-214_fam blaOXA blaOXA NF000418.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-214 family carbapenem-hydrolyzing class D beta-lactamase +blaOXA-229_fam blaOXA blaOXA NF000501.2 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-229 family carbapenem-hydrolyzing class D beta-lactamase +blaOXA-22_fam blaOXA-PR blaOXA NF033509.1 575.00 575.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-22 family class D beta-lactamase +blaOXA-23_fam blaOXA blaOXA NF000266.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-23 family carbapenem-hydrolyzing class D beta-lactamase +blaOXA-24_fam blaOXA blaOXA NF000434.2 615.00 615.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-24 family carbapenem-hydrolyzing class D beta-lactamase +blaOXA-266_fam blaOXA blaOXA NF033653.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-266 family class D beta-lactamase +blaOXA-274_fam blaOXA blaOXA NF033648.1 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-274 family class D beta-lactamase +blaOXA-286_fam blaOXA blaOXA NF000520.2 570.00 570.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-286 family class D beta-lactamase +blaOXA-294_fam blaOXA blaOXA NF038386.1 580.00 580.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-294 family class D beta-lactamase +blaOXA-2_fam blaOXA blaOXA NF000267.2 590.00 590.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-2 family class D beta-lactamase +blaOXA-364_fam blaOXA-PR blaOXA NF033815.0 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-364 family class D beta-lactamase +blaOXA-372_fam blaOXA blaOXA NF000415.2 575.00 575.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-372 family carbapenem-hydrolyzing class D beta-lactamase +blaOXA-427_fam blaOXA-PR blaOXA NF038217.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM OXA-427 family carbapenem-hydrolyzing class D beta-lactamase +blaOXA-42_fam blaOXA-PR blaOXA NF040531.1 540.00 540.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-42 family class D beta-lactamase +blaOXA-46_fam blaOXA blaOXA NF033104.0 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-46 family oxacillin-hydrolyzing class D beta-lactamase +blaOXA-48_fam blaOXA blaOXA NF000387.2 580.00 580.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-48 family class D beta-lactamase +blaOXA-493_fam blaOXA_Campy blaOXA NF000462.2 475.00 475.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-493 family class D beta-lactamase +blaOXA-50_fam blaOXA blaOXA NF000432.2 580.00 580.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-50 family oxacillin-hydrolyzing class D beta-lactamase +blaOXA-51_fam blaOXA blaOXA NF000268.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-51 family carbapenem-hydrolyzing class D beta-lactamase +blaOXA-542_fam blaOXA blaOXA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-542 family carbapenem-hydrolyzing class D beta-lactamase +blaOXA-548_fam blaOXA blaOXA NF040530.1 620.00 620.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-548 family class D beta-lactamase +blaOXA-55_fam blaOXA blaOXA NF033667.1 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-55 family carbapenem-hydrolyzing class D beta-lactamase +blaOXA-576_fam blaOXA_Campy blaOXA NF033613.1 530.00 530.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-576 family class D beta-lactamase +blaOXA-58_fam blaOXA blaOXA NF000500.2 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-58 family carbapenem-hydrolyzing class D beta-lactamase +blaOXA-5_fam blaOXA blaOXA NF040527.1 585.00 585.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-5 family class D beta-lactamase +blaOXA-60_fam blaOXA blaOXA NF000395.3 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-60 family carbapenem-hydrolyzing class D beta-lactamase +blaOXA-61_fam blaOXA_Campy blaOXA NF000435.2 540.00 540.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-61 family class D beta-lactamase +blaOXA-62_fam blaOXA blaOXA NF000430.2 560.00 560.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-62 family carbapenem-hydrolyzing class D beta-lactamase +blaOXA-63_fam blaOXA blaOXA NF000429.2 560.00 560.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-63 family oxacillin-hydrolyzing class D beta-lactamase +blaOXA-679_fam blaOXA blaOXA NF038333.1 570.00 570.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM OXA-679 family carbapenem-hydrolyzing class D beta-lactamase +blaOXA-727_fam blaOXA blaOXA NF033666.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-727 family class D beta-lactamase +blaOXA-85_fam blaOXA blaOXA NF000502.2 550.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-85 family oxacillin-hydrolyzing class D beta-lactamase +blaOXA-919_fam blaOXA-PR blaOXA NF038183.1 575.00 575.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-919 family class D beta-lactamase +blaOXA-9_fam blaOXA-PR blaOXA NF040532.1 575.00 575.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXA-9 family class D beta-lactamase +blaOXA-PR bla-D blaOXA NF000270.1 280.00 280.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class D beta-lactamase +blaOXA_Campy blaOXA blaOXA NF000463.2 390.00 390.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class D beta-lactamase +blaOXA bla-D blaOXA NF012161.0 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class D beta-lactamase +blaOXY-1 blaOXY blaOXY - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXY-1 family class A extended-spectrum beta-lactamase +blaOXY-2 blaOXY blaOXY - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXY-2 family class A extended-spectrum beta-lactamase +blaOXY-3 blaOXY blaOXY - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXY-3 family class A extended-spectrum beta-lactamase +blaOXY-4 blaOXY blaOXY - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXY-4 family class A extended-spectrum beta-lactamase +blaOXY-5 blaOXY blaOXY - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXY-5 family class A extended-spectrum beta-lactamase +blaOXY-6 blaOXY blaOXY - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXY-6 family class A extended-spectrum beta-lactamase +blaOXY bla-A blaOXY NF000271.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM OXY family class A extended-spectrum beta-lactamase +blaPAC bla-C blaPAC NF033159.0 850.00 850.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM PAC family class C beta-lactamase +blaPAD bla-A blaPAD NF040472.1 575.00 575.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM PAD family carbapenem-hydrolyzing class A beta-lactamase +blaPAM bla-B3 blaPAM - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR BETA-LACTAM CARBAPENEM PAM family subclass B3 metallo-beta-lactamase +blaPAU bla-A blaPAU NF033867.1 640.00 640.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM PAU family class A beta-lactamase +blaPDC_gen bla-C blaPDC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN PDC family class C beta-lactamase +blaPDC_var blaPDC_gen blaPDC NF000519.2 900.00 900.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN PDC variant family class C beta-lactamase +blaPDC blaPDC_gen blaPDC NF000422.6 865.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN PDC family class C beta-lactamase +blaPEDO-1_fam bla-B3 blaB3PEDO NF000457.2 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM PEDO-1 family subclass B3 metallo-beta-lactamase +blaPEDO-2_fam bla-B3 blaB3PEDO NF000458.2 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM PEDO-2 family subclass B3 metallo-beta-lactamase +blaPEDO-3_fam blaB-IND-MUS blaB1PEDO NF000453.2 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM PEDO-3 family subclass B1 metallo-beta-lactamase +blaPER bla-A2 blaPER NF000389.2 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN PER family class A extended-spectrum beta-lactamase +blaPFM blaSFH_gen blaPFM NF038003.1 555.00 555.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM PFM family subclass B2 metallo-beta-lactamase +blaPLA-ORN-TER bla-A bla NF000275.2 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM PLA/ORN/TER family class A beta-lactamase +blaPLA blaPLA-ORN-TER blaPLA NF038398.1 670.00 670.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM PLA family class A beta-lactamase +blaPLN bla-B3 blaPLN - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM PLN family subclass B3 metallo-beta-lactamase +blaPME bla-A blaPME NF000414.2 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM PME family class A beta-lactamase +blaPNGM bla-B blaPNGM - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM PNGM family subclass B3-like metallo-beta-lactamase +blaPOM bla-B3 blaPOM NF000438.2 610.00 610.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM POM family subclass B3 metallo-beta-lactamase +blaPSE blaCARB_gen blaPSE NF000480.2 580.00 580.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM PSE family carbenicillin-hydrolyzing class A beta-lactamase +blaPST blaDIM-SIM-IMP blaPST NF033584.1 525.00 525.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM PST family subclass B1 metallo-beta-lactamase +blaPSV bla-A blaPSV NF033174.0 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM PSV family class A beta-lactamase +blaP bla-A_firm blaP NF012156.1 660.00 660.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A beta-lactamase BlaP +blaR1-2 blaR1 blaR1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM beta-lactam sensor/signal transducer BlaR1 +blaR1_gen AMR blaR1 NF000326.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM BlaR1 family beta-lactam sensor/signal transducer +blaR1 blaR1_gen blaR1 NF033108.1 1200.00 1200.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM beta-lactam sensor/signal transducer BlaR1 +blaR39 bla-A blaR39 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A beta-lactamase +blaRAA bla-A2 blaRAA NF040467.1 590.00 590.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN RAA family extended-spectrum beta-lactamase +blaRAHN bla-A blaRAHN - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN RAHN family class A beta-lactamase +blaRCP bla-A blaRCP NF033466.0 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM RCP family class A beta-lactamase +blaRHO bla-C blaRHO NF033575.1 825.00 825.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM RHO family class C beta-lactamase +blaROB bla-A blaROB NF033568.1 675.00 675.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN ROB family class A beta-lactamase +blaRSA1 bla-A blaRSA1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN RSA1 family class A beta-lactamase +blaRSA2 bla-A blaRSA2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM RSA2 family carbapenem-hydrolyzing class A beta-lactamase +blaRSC1 bla-C blaRSC1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN RSC1 family class C beta-lactamase +blaRSD1 blaOXA blaRSD1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM RSD1 family class D beta-lactamase +blaRSD2 blaOXA blaRSD2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM RSD2 family class D beta-lactamase +blaRTG blaCARB_gen blaRTG NF000284.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM RTG family carbenicillin-hydrolyzing class A beta-lactamase +blaRUB bla-A blaRUB NF033204.1 635.00 635.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM RUB family class A broad-spectrum beta-lactamase +blaRm3 bla-B3 blaRm3 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM subclass B3 metallo-beta-lactamase Rm3 +blaSCO bla-A blaSCO NF000327.2 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM SCO family class A beta-lactamase +blaSED bla-A blaSED NF000328.2 570.00 570.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM SED family class A beta-lactamase +blaSFC bla-A_carba blaSFC NF040547.1 680.00 680.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM SFC family carbapenem-hydrolyzing class A beta-lactamase +blaSFDC CMY2-MIR-ACT-EC blaSFDC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN SFDC family class C beta-lactamase +blaSFH_gen bla-B2 bla NF012225.0 440.00 440.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM SFH-related subclass B2 metallo-beta-lactamase +blaSFH blaSFH_gen blaSFH NF012224.1 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM SFH family subclass B2 metallo-beta-lactamase +blaSGM bla-A blaSGM NF000512.2 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM SGM family class A beta-lactamase +blaSHN bla-B1 blaSHN - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM SHN family subclass B1 metallo-beta-lactamase +blaSHV-LEN bla-A blaSHV NF012143.0 535.00 535.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM SHV/LEN/OKP family class A beta-lactamase +blaSHV blaSHV-LEN blaSHV NF000285.3 640.00 640.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM SHV family class A beta-lactamase +blaSHW blaDIM-SIM-IMP blaSHW - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM SHW family subclass B1 metallo-beta-lactamase +blaSIM blaDIM-SIM-IMP blaSIM NF000426.2 560.00 560.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM SIM family subclass B1 metallo-beta-lactamase +blaSMB bla-B3 blaSMB NF000287.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM SMB-1 family subclass B3 metallo-beta-lactamase +blaSME bla-A_carba blaSME NF012142.0 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM SME family carbapenem-hydrolyzing class A beta-lactamase +blaSPG-1_fam bla-B3 blaSPG NF000459.2 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM SPG-1 family subclass B3 metallo-beta-lactamase +blaSPM bla-B1 blaSPM NF012150.3 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM SPM family subclass B1 metallo-beta-lactamase +blaSPN79 bla-B1 blaSPN79 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM SPN79 family subclass B1 metallo-beta-lactamase +blaSPR HARLDQ_not_B3 blaSPR - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM SPR family putative metallo-beta-lactamase +blaSPS bla-B1 blaSPS - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM SPS family subclass B1 metallo-beta-lactamase +blaSRT bla-C blaSRT NF000423.2 860.00 860.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN SRT/SST family class C beta-lactamase +blaSTA bla-B1 blaSTA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM STA family subclass B1 metallo-beta-lactamase +blaS bla-A blaS - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A beta-lactamase +blaTEM bla-A blaTEM NF000531.2 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM TEM family class A beta-lactamase +blaTER blaPLA-ORN-TER blaTER NF038400.1 620.00 620.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM TER family class A beta-lactamase +blaTHIN-B blaTHIN blaTHIN-B - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM subclass B3 metallo-beta-lactamase THIN-B +blaTHIN bla-B3 blaTHIN NF000440.2 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM THIN family subclass B3 metallo-beta-lactamase +blaTLA2 bla-A2 tla2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM TLA2 family class A extended-spectrum beta-lactamase +blaTLA bla-A2 blaTLA NF000298.2 640.00 640.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM TLA family class A extended-spectrum beta-lactamase +blaTMB blaDIM-SIM-IMP blaTMB NF000443.2 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM TMB family subclass B1 metallo-beta-lactamase +blaTRU blaCMY-FOX blaTRU - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM TRU family class C beta-lactamase +blaTTU blaDIM-SIM-IMP blaTTU NF033585.1 525.00 525.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM TTU family subclass B1 metallo-beta-lactamase +blaTUS blaMUS-TUS-MOC blaTUS NF000442.2 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM TUS family subclass B1 metallo-beta-lactamase +blaVAM bla-B1 blaVAM - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR BETA-LACTAM CARBAPENEM VAM family subclass B1 metallo-beta-lactamase +blaVCC bla-A_carba blaVCC NF000518.2 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM VCC family carbapenem-hydrolyzing class A beta-lactamase +blaVEB bla-A2 blaVEB NF000390.2 670.00 670.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN VEB family class A extended-spectrum beta-lactamase +blaVHH blaCARB_gen blaVHH - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM VHH family class A beta-lactamase +blaVHW blaCARB_gen blaVHW - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM VHW family class A beta-lactamase +blaVIM bla-B1 blaVIM NF012100.0 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM VIM family subclass B1 metallo-beta-lactamase +blaVMB bla-B1 blaVMB NF038184.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM VMB family subclass B1 metallo-beta-lactamase +blaYEM bla-B2 blaYEM NF038166.1 535.00 535.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM YEM family subclass B2 metallo-beta-lactamase +blaYRC CMY2-MIR-ACT-EC blaYRC NF038089.1 870.00 870.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN YRC family class C beta-lactamase +blaZ-mecC blaZ_gen blaZ NF033140.0 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM mecC-type penicillin-hydrolyzing class A beta-lactamase BlaZ +blaZOG bla-B1 blaZOG - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM ZOG family subclass B1 metallo-beta-lactamase +blaZ_gen bla-A bla NF033141.0 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM BlaZ-like penicillin-hydrolyzing class A beta-lactamase +blaZ blaZ_gen blaZ NF033139.1 580.00 580.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM penicillin-hydrolyzing class A beta-lactamase BlaZ +bla AMR bla - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM beta-lactamase +ble-MBL sequest ble NF012202.0 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BLEOMYCIN BLEOMYCIN bleomycin binding protein Ble-MBL +ble-Sh ble ble-Sh NF000489.1 260.00 260.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BLEOMYCIN BLEOMYCIN phleomycin/bleomycin binding protein Ble-Sh +ble-Sv ble ble NF000028.1 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BLEOMYCIN BLEOMYCIN BLMA family bleomycin binding protein +bleO sequest bleO NF000027.1 275.00 275.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BLEOMYCIN BLEOMYCIN bleomycin binding protein +ble_BLMT_gen sequest ble NF000005.4 210.00 210.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BLEOMYCIN BLEOMYCIN BLMT family bleomycin binding protein +ble_Tn5 ble_BLMT_gen ble - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BLEOMYCIN BLEOMYCIN bleomycin binding protein BLMT +ble sequest ble NF033156.1 140.00 140.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BLEOMYCIN BLEOMYCIN BLMA family bleomycin binding protein +blmA ble blmA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BLEOMYCIN BLEOMYCIN bleomycin binding protein BLMA +blmB_tlmB AMR blmB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BLEOMYCIN BLEOMYCIN bleomycin family antibiotic N-acetyltransferase +blmB blmB_tlmB blmB NF000483.1 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BLEOMYCIN BLEOMYCIN bleomycin family antibiotic N-acetyltransferase BlmB +bmaE VIRULENCE_Ecoli bmaE - 0.00 0.00 87.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE M agglutinin-type afimbrial adhesin BmaE/AfaE-8 +cadA_Lm P-type_ATPase cadA - 0.00 0.00 88.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL CADMIUM CADMIUM cadmium-translocating P-type ATPase CadA +cadC_Lm HTH_5 cadC - 0.00 0.00 90.00 90.00 90.00 93.00 90.00 25.00 1 STRESS METAL CADMIUM CADMIUM Cd(II)-sensing metalloregulatory transcriptional repressor CadC +cadC_Sa HTH_5 cadC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL CADMIUM/LEAD/ZINC CADMIUM/LEAD/ZINC Cd(II)/Pb(II)/Zn(II)-sensing metalloregulatory transcriptional repressor CadC +cadD METAL cadD - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL CADMIUM CADMIUM cadmium resistance transporter CadD +cadR METAL cadR - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL CADMIUM CADMIUM cadmium resistance transcriptional regulator CadR +capU VIRULENCE_Ecoli capU - 0.00 0.00 92.00 90.00 90.00 93.00 90.00 25.00 1 VIRULENCE VIRULENCE putative hexosyltransferase CapU +car(A) abcf-produ car(A) NF000166.1 1050.00 1050.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE ABC-F type ribosomal protection protein Car(A) +cat-TC catA9 cat-TC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-9 chloramphenicol O-acetyltransferase Cat-TC +cat86 catA6 cat86 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-6 chloramphenicol O-acetyltransferase Cat86 +catA10 catA catA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-10 chloramphenicol O-acetyltransferase +catA11 catA catA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-11 chloramphenicol O-acetyltransferase +catA13 catA catA13 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-13 chloramphenicol O-acetyltransferase +catA14 catA catA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-14 chloramphenicol O-acetyltransferase +catA15 catA catA15 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-15 chloramphenicol acetyltransferase CatA15 +catA16 catA catA16 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-16 chloramphenicol O-acetyltransferase CatQ +catA1 catA catA1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-1 chloramphenicol O-acetyltransferase +catA2 catA catA2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-2 chloramphenicol O-acetyltransferase CatII +catA3 catA catA3 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-3 chloramphenicol O-acetyltransferase CatIII +catA4 catA catA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-4 chloramphenicol O-acetyltransferase +catA5 catA catA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-5 chloramphenicol O-acetyltransferase +catA6 catA catA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-6 chloramphenicol O-acetyltransferase +catA7 catA catA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-7 chloramphenicol O-acetyltransferase +catA8 catA catA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-8 chloramphenicol O-acetyltransferase +catA9 catA catA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-9 chloramphenicol O-acetyltransferase +catA cat catA NF000491.1 270.00 270.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A chloramphenicol O-acetyltransferase +catB10 catB catB10 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type B chloramphenicol O-acetyltransferase CatB10 +catB1 catB catB1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type B-1 chloramphenicol O-acetyltransferase CatB1 +catB2 catB catB2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type B-2 chloramphenicol O-acetyltransferase CatB2 +catB3 catB catB3 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type B-3 chloramphenicol O-acetyltransferase CatB3 +catB7 catB catB7 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type B-4 chloramphenicol O-acetyltransferase CatB7 +catB8 catB catB8 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type B-3 chloramphenicol O-acetyltransferase CatB8 +catB9 catB catB9 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type B-5 chloramphenicol O-acetyltransferase CatB9 +catB cat catB NF000490.1 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type B chloramphenicol O-acetyltransferase +catC cat catC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR PHENICOL CHLORAMPHENICOL type B chloramphenicol O-acetyltransferase +catD catA11 catD - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-11 chloramphenicol O-acetyltransferase CatD +catP catA11 catP - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A-11 chloramphenicol O-acetyltransferase CatP +catU catA catU - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A chloramphenicol O-acetyltransferase +catV catA catV - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL type A chloramphenicol O-acetyltransferase CatV +cat AMR cat - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL chloramphenicol O-acetyltransferase CAT +cblA bla-A2 cblA NF033098.1 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN CblA family class A beta-lactamase +cdtB_III cdtB cdtB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE cytolethal distending toxin type III/V nuclease subunit CdtB +cdtB_II cdtB cdtB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE cytolethal distending toxin type II nuclease subunit CdtB +cdtB_IV cdtB cdtB - 0.00 0.00 97.00 90.00 90.00 98.00 90.00 25.00 1 VIRULENCE VIRULENCE cytolethal distending toxin type IV nuclease subunit CdtB +cdtB_I cdtB cdtB - 0.00 0.00 97.00 90.00 90.00 98.00 90.00 25.00 1 VIRULENCE VIRULENCE cytolethal distending toxin type I nuclease subunit CdtB +cdtB_Salmo VIRULENCE cdtB - 0.00 0.00 81.00 90.00 90.00 85.00 90.00 25.00 1 VIRULENCE VIRULENCE cytolethal distending toxin S-CDT +cdtB VIRULENCE_Ecoli cdtB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE cytolethal distending toxin nuclease subunit CdtB +cepA bla-A2 cepA NF033102.1 660.00 660.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN CepA family class A extended-spectrum beta-lactamase +cepH blaCMY-FOX cepH - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN cephalosporin-hydrolyzing class C beta-lactamase CepH +cepS blaCMY-FOX cepS - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CEPHALOSPORIN cephalosporin-hydrolyzing class C beta-lactamase CepS +cfaC VIRULENCE_Ecoli cfaC - 0.00 0.00 95.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE CFA/I pilus usher protein CfaC +cfiA_fam bla-B1 cfiA NF000322.2 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM CfiA family subclass B1 metallo-beta-lactamase +cfr(B) cfr_gen cfr(B) - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN 23S rRNA (adenine(2503)-C(8))-methyltransferase Cfr(B) +cfr(C) cfr_gen cfr(C) - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 2 AMR AMR LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN 23S rRNA (adenine(2503)-C(8))-methyltransferase Cfr(C) +cfr(D) cfr_gen cfr(D) - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN 23S rRNA (adenine(2503)-C(8))-methyltransferase Cfr(D) +cfr(E) cfr_gen cfr(E) - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN 23S rRNA (adenine(2503)-C(8))-methyltransferase Cfr(E) +cfr-Cb cfr_gen cfr - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN Cfr family 23S rRNA (adenine(2503)-C(8))-methyltransferase +cfr_gen AMR cfr NF000424.3 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN Cfr family 23S rRNA (adenine(2503)-C(8))-methyltransferase +cfr cfr_gen cfr - 0.00 0.00 85.00 90.00 90.00 90.00 90.00 25.00 2 AMR AMR LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN 23S rRNA (adenine(2503)-C(8))-methyltransferase Cfr +cfxA2 cfxA_fam cfxA2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A extended-spectrum beta-lactamase CfxA2 +cfxA3 cfxA_fam cfxA3 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A extended-spectrum beta-lactamase CfxA3 +cfxA4 cfxA_fam cfxA4 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A extended-spectrum beta-lactamase CfxA4 +cfxA5 cfxA_fam cfxA5 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A broad-spectrum beta-lactamase CfxA5 +cfxA6 cfxA_fam cfxA6 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A broad-spectrum beta-lactamase CfxA6 +cfxA_fam bla-A2 cfxA NF033100.1 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM CfxA family class A broad-spectrum beta-lactamase +cfxA cfxA_fam cfxA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A broad-spectrum beta-lactamase CfxA +chrA METAL chrA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL CHROMATE CHROMATE chromate resistance efflux protein ChrA +chrB_rRNA_meth rlmA(II)_gen chrB NF000488.1 620.00 620.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (guanine(748)-N(1))-methyltransferase ChrB +chrR_I METAL chrR - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL CHROMATE CHROMATE class I chromate reductase ChrR +cif VIRULENCE_Ecoli cif - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE type III secretion system effector Cif +cipA cfr_gen cipA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN 23S rRNA (adenine(2503)-C(8))-methyltransferase CipA +clbA cfr_gen clbA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA +clbB cfr_gen clbB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbB +clbC cfr_gen clbC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbC +cmlA1 cmlA cmlA1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL chloramphenicol efflux MFS transporter CmlA1 +cmlA4 cmlA cmlA4 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL chloramphenicol efflux MFS transporter CmlA4 +cmlA5 cmlA cmlA5 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL chloramphenicol efflux MFS transporter CmlA5 +cmlA_floR MFS_efflux_CHL cml NF033134.0 450.00 450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL CmlA/FloR family chloramphenicol efflux MFS transporter +cmlA cmlA_floR cmlA NF000509.1 875.00 835.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL CmlA family chloramphenicol efflux MFS transporter +cmlB1 cmlA_floR cmlB1 NF012203.0 900.00 900.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL chloramphenicol efflux MFS transporter CmlB1 +cmlB cmlA_floR cmlB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL chloramphenicol efflux MFS transporter CmlB +cmlR cmx_cmrA cmlR - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL chloramphenicol efflux MFS transporter CmlR +cmlV cmx_cmrA cmlV NF012199.0 830.00 830.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL chloramphenicol efflux MFS transporter CmlV +cml_Ensi cmlA_floR cml - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL Cml family chloramphenicol efflux MFS transporter +cml_Myxo cmlA_floR cml - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL Cml family chloramphenicol efflux MFS transporter +cml_Ochro cmlA_floR cml - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL Cml family chloramphenicol efflux MFS transporter +cmrA cmx_cmrA cmrA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL chloramphenicol efflux MFS transporter CmrA +cmx_cmrA MFS_efflux_CHL cmx_cmrA NF033135.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL Cmx/CmrA family chloramphenicol efflux MFS transporter +cmx cmx_cmrA cmx NF000510.1 800.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL chloramphenicol efflux MFS transporter Cmx +cna VIRULENCE_Saur cna - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE collagen adhesin Cna +cnf1 cnf_gen cnf1 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE cytotoxic necrotizing factor CNF1 +cnf2 cnf_gen cnf2 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE cytotoxic necrotizing factor CNF2 +cnf3 cnf_gen cnf3 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE cytotoxic necrotizing factor CNF3 +cnf_gen VIRULENCE_Ecoli cnf - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE CNF1 family cytotoxic necrotizing factor +cnrA METAL-RND-IM cnrA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL NICKEL NICKEL nickel efflux RND transporter permease subunit CnrA +cnrC METAL cnrC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL NICKEL NICKEL nickel efflux RND transporter outer membrane subunit CnrC +cnrT METAL cnrT - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL NICKEL NICKEL nickel diffusion facilitator CnrT +cnrY METAL cnrY - 0.00 0.00 80.00 90.00 90.00 81.00 90.00 25.00 1 STRESS METAL NICKEL NICKEL nickel resistance system anti-sigma factor CnrY +cofA pilus cofA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE type IV pilus CFA/III major pilin +copA_Ehir P-type_ATPase copA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER COPPER copper-translocating P-type ATPase CopA +copB_Ehir P-type_ATPase copB - 0.00 0.00 77.00 90.00 90.00 80.00 90.00 25.00 1 STRESS METAL COPPER/SILVER COPPER/SILVER copper/silver-translocating P-type ATPase CopB +copC_Psyr copC copC - 0.00 0.00 85.00 90.00 90.00 90.00 90.00 25.00 1 STRESS METAL COPPER COPPER copper homeostasis periplasmic binding protein CopC +copC METAL copC - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL copper homeostasis periplasmic binding protein CopC +copD METAL copD - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL copper homeostasis membrane protein CopD +copL METAL copL - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER COPPER transcriptional regulator CopL +copP METAL copP NF033781.1 112.00 112.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL COPPER COPPER copper-binding metallochaperone CopP +copR_gen METAL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL CopR family heavy metal response regulator +copR copR_gen copR - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL COPPER COPPER heavy metal response regulator transcription factor CopR +copS METAL copS - 0.00 0.00 91.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER COPPER copper resistance membrane spanning protein CopS +cpa VIRULENCE_Cperf cpa - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE alpha-toxin +cpb2 VIRULENCE_Cperf cpb2 - 0.00 0.00 85.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE beta-2 toxin CPB2 +cpb VIRULENCE_Cperf cpb - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE beta-channel forming cytolysin CPB +cpd VIRULENCE_Cperf cpd - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE beta-channel forming cytolysin CPD +cpe VIRULENCE_Cperf cpe - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE enterotoxin CPE +cphA1 cphA cphA1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM subclass B2 metallo-beta-lactamase CphA1 +cphA bla-B2 cphA NF000329.2 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM CphA family subclass B2 metallo-beta-lactamase +cpt AMR cpt NF033114.1 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL chloramphenicol phosphotransferase CPT +crcB BIOCIDE crcB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS BIOCIDE FLUORIDE FLUORIDE fluoride efflux transporter CrcB +crpP AMR crpP - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FLUOROQUINOLONE FLUOROQUINOLONE ciprofloxacin resistance protein CrpP +cueA P-type_ATPase cueA - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER COPPER copper resistance metal-translocating P1-type ATPase CueA +cusB_gen METAL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL CusB family metal efflux RND transporter periplasmic adaptor subunit +cvaC VIRULENCE_Ecoli cvaC - 0.00 0.00 83.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE colicin V +dfr1_rpt dfrA dfrA NF000008.1 420.00 420.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant repeat-containing dihydrofolate reductase DfrA1 +dfrA10 dfr_gen dfrA10 NF000018.2 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA10 +dfrA12_A21 dfr_gen dfrA NF000055.3 330.00 330.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM DfrA12/DfrA21 family trimethoprim-resistant dihydrofolate reductase +dfrA12 dfrA12_A21 dfrA12 NF000053.2 360.00 360.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA12 +dfrA14 dfrA dfrA14 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA14 +dfrA15 dfrA dfrA15 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA15 +dfrA16 dfrA dfrA16 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA16 +dfrA17 dfrA dfrA17 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA17 +dfrA18 dfr_gen dfrA18 NF000039.1 375.00 375.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA18 +dfrA19 dfr_gen dfrA19 NF000041.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA19 +dfrA1 dfrA dfrA1 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA1 +dfrA20 dfr_gen dfrA20 NF000127.2 325.00 325.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA20 +dfrA21 dfrA12_A21 dfrA21 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA21 +dfrA22 dfrA12_A21 dfrA22 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA22 +dfrA23 dfr_gen dfrA23 NF000134.2 375.00 375.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA23 +dfrA24 dfr_gen dfrA24 NF000146.2 375.00 375.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA24 +dfrA25 dfrA dfrA25 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA25 +dfrA26 dfr_gen dfrA26 NF000006.2 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA26 +dfrA27 dfrA dfrA27 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA27 +dfrA29 dfrA dfrA29 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA29 +dfrA30 dfrA dfrA30 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA30 +dfrA31 dfrA dfrA31 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA31 +dfrA32 dfrA dfrA32 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 20.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA32 +dfrA33 dfrA12_A21 dfrA33 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA33 +dfrA34 dfr_gen dfrA34 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA34 +dfrA35 dfr_gen dfrA35 NF033851.1 360.00 360.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA35 +dfrA36 dfr_gen dfrA36 NF033868.0 360.00 360.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA36 +dfrA37 dfrA dfrA37 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA37 +dfrA38 dfr_gen dfrA38 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA38 +dfrA39 dfr_gen dfrA39 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA39 +dfrA3b dfr_gen dfrA3b NF000065.1 320.00 320.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA3b +dfrA3 dfr_gen dfrA3 NF000019.2 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA3 +dfrA42 dfr_gen dfrA42 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA42 +dfrA43 dfr_gen dfrA43 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA43 +dfrA44 dfr_gen dfrA44 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA44 +dfrA46 dfrA dfrA46 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA46 +dfrA47 dfrA12_A21 dfrA47 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA47 +dfrA48 dfrA dfrA48 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA48 +dfrA4 dfr_gen dfrA4 - 0.00 0.00 90.00 90.00 90.00 95.00 90.00 25.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA4 +dfrA5 dfrA dfrA5 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA5 +dfrA6 dfrA dfrA6 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA6 +dfrA7 dfrA dfrA7 - 0.00 0.00 98.00 90.00 90.00 98.00 90.00 90.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA7 +dfrA8 dfr_gen dfrA8 NF000126.2 325.00 325.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA8 +dfrA9 dfr_gen dfrA9 NF000109.2 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA9 +dfrA dfr_gen dfrA NF000330.1 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrA +dfrB1 dfrB dfrB1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrB1 +dfrB2 dfrB dfrB2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrB2 +dfrB4 dfrB dfrB4 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrB4 +dfrB5 dfrB dfrB5 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrB5 +dfrB dfr_gen dfrB NF000331.1 160.00 160.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrB +dfrC dfr_gen dfrC NF000155.1 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrC +dfrD dfr_DGK dfrD NF000159.1 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrD +dfrE dfr_gen dfrE NF040541.1 347.00 347.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrE +dfrF dfr_gen dfrF NF000333.1 320.00 320.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrF +dfrG dfr_DGK dfrG NF000143.1 365.00 365.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrG +dfrI dfr_gen dfrI NF000012.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrI +dfrK dfr_DGK dfrK - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase DfrK +dfr_DGK dfr_gen dfr NF000332.1 300.00 300.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM DfrD/DfrG/DfrK family trimethoprim-resistant dihydrofolate reductase +dfr_gen AMR dfrA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TRIMETHOPRIM TRIMETHOPRIM trimethoprim-resistant dihydrofolate reductase +dpsA METAL dpsA - 0.00 0.00 90.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL non-specific DNA-binding protein DpsA +eae_typing_E._coli VIRULENCE eae NF033627.3 1400.00 1400.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE INTIMIN INTIMIN intimin +eat(A) lsa eat(A) - 0.00 0.00 90.00 90.00 90.00 96.00 90.00 25.00 0 AMR AMR PLEUROMUTILIN PLEUROMUTILIN ABC-F type ribosomal protection-like protein Eat(A) +eatA auto_tox eatA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease autotransporter toxin EatA +ednB VIRULENCE_Saur ednB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE epidermal cell differentiation inhibitor EdnB +efa1 VIRULENCE_Ecoli efa1 - 0.00 0.00 80.00 80.00 90.00 85.00 90.00 25.00 1 VIRULENCE VIRULENCE lymphostatin Efa1/LifA +efflux_TF EFFLUX - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR antibiotic efflux transcriptional regulator +ehxA VIRULENCE_Ecoli ehxA - 0.00 0.00 92.00 90.00 90.00 94.00 90.00 25.00 1 VIRULENCE VIRULENCE enterohemolysin EhxA +eilA VIRULENCE_Ecoli eilA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE HilA family transcriptional regulator EilA +emhA RND-peri emhA - 0.00 0.00 90.00 90.00 90.00 90.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX efflux RND transporter periplasmic adaptor subunit EmhA +emhB RND-IM emhB - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX efflux RND transporter permease subunit EmhB +emhC adeC-K-oprM emhC - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX efflux RND transporter outer membrane subunit EmhC +emrA-sm MFS_efflux emrA - 0.00 0.00 88.00 90.00 90.00 88.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux MFS transporter periplasmic adaptor subunit EmrA +emrB-sm MFS_efflux emrB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux MFS transporter permease subunit EmrB +emrC RND-OM emrC - 0.00 0.00 90.00 90.00 90.00 90.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux transporter outer membrane subunit EmrC +emrD3 MFS_efflux emrD3 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux MFS transporter EmrD-3 +emrD MFS_efflux emrD - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux MFS transporter EmrD +emtA_fam AMR emt NF033398.1 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AVILAMYCIN AVILAMYCIN EmtA family 23S rRNA (guanine(2470)) methyltransferase +emtA emtA_fam emtA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AVILAMYCIN AVILAMYCIN 23S rRNA (guanine(2470)) methyltransferase EmtA +epeA auto_tox epeA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease autotransporter EpeA +epsilon-1 epsilon eae - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 35.00 1 VIRULENCE VIRULENCE INTIMIN EPSILON intimin type epsilon +epsilon-2 epsilon eae - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 35.00 1 VIRULENCE VIRULENCE INTIMIN EPSILON intimin type epsilon +epsilon-3 epsilon eae - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 35.00 1 VIRULENCE VIRULENCE INTIMIN EPSILON intimin type epsilon +epsilon-4 epsilon eae - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 35.00 1 VIRULENCE VIRULENCE INTIMIN EPSILON intimin type epsilon +epsilon-6 epsilon eae - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 35.00 1 VIRULENCE VIRULENCE INTIMIN EPSILON intimin type epsilon +epsilon-7 epsilon eae - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 35.00 1 VIRULENCE VIRULENCE INTIMIN XI intimin type xi +epsilon-8 epsilon eae - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 35.00 1 VIRULENCE VIRULENCE INTIMIN EPSILON intimin type epsilon +epsilon eae_typing_E._coli eae - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 35.00 1 VIRULENCE VIRULENCE INTIMIN EPSILON intimin type epsilon +ere(A) ere ere(A) NF000208.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE EreA family erythromycin esterase +ere(B) ere ere(B) NF000209.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE ERYTHROMYCIN EreB family erythromycin esterase +ere(D) ere ere(D) NF000516.1 800.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE ERYTHROMYCIN EreD family erythromycin esterase +ere AMR ere - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE erythromycin esterase +erm(30) erm-23S_rRNA erm(30) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(30) +erm(31) erm-23S_rRNA erm(31) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(31) +erm(32) rlmA(II)_gen erm(32) NF000133.1 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE/STREPTOGRAMIN LINCOSAMIDE/STREPTOGRAMIN 23S rRNA (guanine(748)-N(1))-methyltransferase Erm(32) +erm(33) erm-23S_rRNA erm(33) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(33) +erm(34) erm-23S_rRNA erm(34) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34) +erm(35) erm-23S_rRNA erm(35) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(35) +erm(36) erm-23S_rRNA erm(36) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(36) +erm(37) erm_gen erm(37) NF000468.1 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(37) +erm(38) erm-23S_rRNA erm(38) NF012218.0 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(38) +erm(39) erm-23S_rRNA erm(39) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(39) +erm(40) erm-23S_rRNA erm(40) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(40) +erm(42) erm-23S_rRNA erm(42) NF000077.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(42) +erm(43) erm-23S_rRNA erm(43) NF000412.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(43) +erm(44)v erm-23S_rRNA erm(44)v - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(44)v +erm(44) erm-23S_rRNA erm(44) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(44) +erm(45) erm-23S_rRNA erm(45) NF000411.1 525.00 525.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(45) +erm(46) erm-23S_rRNA erm(46) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(46) +erm(47) erm-23S_rRNA erm(47) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(47) +erm(48) erm-23S_rRNA erm(48) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(48) +erm(49) erm-23S_rRNA erm(49) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(49) +erm(A) erm-23S_rRNA erm(A) NF012222.1 475.00 475.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) +erm(B) erm-23S_rRNA erm(B) NF012220.1 525.00 525.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) +erm(C) erm-23S_rRNA erm(C) NF012219.1 530.00 530.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(C) +erm(D) erm-23S_rRNA erm(D) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(D) +erm(E) erm_SHROVE erm(E) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(E) +erm(F) erm-23S_rRNA erm(F) NF012223.0 575.00 575.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) +erm(G) erm-23S_rRNA erm(G) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) +erm(H) erm_SHROVE erm(H) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(H) +erm(K) erm-23S_rRNA erm(K) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(K) +erm(N) erm-23S_rRNA erm(N) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(N) +erm(O) erm_SHROVE erm(O) NF000087.1 450.00 450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(O) +erm(Q) erm-23S_rRNA erm(Q) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(Q) +erm(R) erm_SHROVE erm(R) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(R) +erm(S) erm_SHROVE erm(S) NF000024.1 675.00 675.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(S) +erm(T) erm-23S_rRNA erm(T) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(T) +erm(U) erm-23S_rRNA erm(U) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(U) +erm(V) erm_SHROVE erm(V) NF000047.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(V) +erm(W) erm-23S_rRNA erm(W) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(W) +erm(X) erm-23S_rRNA erm(X) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) +erm(Y) erm-23S_rRNA erm(Y) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(Y) +erm(Z) erm-23S_rRNA erm(Z) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(Z) +erm-23S_rRNA erm_gen erm NF000499.1 215.00 215.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S ribosomal RNA methyltransferase Erm +erm_SHROVE erm-23S_rRNA erm NF000337.1 320.00 320.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE ErmE/ErmH/ErmO/ErmR family 23S rRNA (adenine(2058)-N(6))-methyltransferase +erm_gen AMR erm - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE Erm family 23S rRNA (adenine(2058)-N(6))-methyltransferase +espA VIRULENCE_Ecoli espA - 0.00 0.00 88.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE type III secretion system LEE translocon filament protein EspA +espB VIRULENCE_Ecoli espB - 0.00 0.00 90.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE type III secretion system LEE translocon pore-forming subunit EspB +espC auto_tox espC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease autotransporter toxin EspC +espF VIRULENCE_Ecoli espF - 0.00 0.00 75.00 90.00 90.00 80.00 90.00 25.00 1 VIRULENCE VIRULENCE type III secretion system LEE effector EspF +espI auto_tox espI - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease autotransporter EspI +espJ_gen VIRULENCE_Ecoli espJ - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE EspJ family T3SS effector ADP-ribosyltransferase +espJ espJ_gen espJ - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE type III secretion system effector ADP-ribosyltransferase EspJ +espK VIRULENCE_Ecoli espK - 0.00 0.00 88.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE type III secretion system effector EspK +espP auto_tox espP - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease autotransporter EspP +espX1 VIRULENCE_Ecoli espX1 - 0.00 0.00 84.00 90.00 90.00 85.00 90.00 25.00 1 VIRULENCE VIRULENCE type III secretion system effector EspX1 +estDL136 AMR estDL136 NF033149.0 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL/FLORFENICOL chloramphenicol hydrolase +estX AMR estX - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR alpha/beta fold putative hydrolase EstX +eta VIRULENCE_Saur eta - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE exfoliative toxin A +etb VIRULENCE_Saur etb - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE exfoliative toxin B +etpD VIRULENCE_Ecoli etpD - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE variant type II secretion system secretin EtpD +etx VIRULENCE_Cperf etx - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE epsilon toxin type B +f17a VIRULENCE_Ecoli f17a - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE F17A fimbrial adhesin +f17g VIRULENCE_Ecoli f17g - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE F17G fimbrial adhesin +faeG VIRULENCE_Ecoli faeG - 0.00 0.00 85.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE F4 (K88) fimbria major subunit/adhesin FaeG +farB AMR farB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX fatty acid resistance MFS efflux transporter permease subunit FarB +fasA VIRULENCE_Ecoli fasA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE F6 fimbrial major subunit FasA +fdeC VIRULENCE_Ecoli fdeC - 0.00 0.00 88.00 90.00 90.00 93.00 90.00 25.00 1 VIRULENCE VIRULENCE intimin-like adhesin FdeC +fedA VIRULENCE_Ecoli fedA - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 1 VIRULENCE VIRULENCE F18 fimbrial major subunit FedA +fedF VIRULENCE_Ecoli fedF - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE F18 fimbrial adhesin subunit FedF +fexA MFS_efflux_CHL fexA NF000218.1 900.00 900.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL/FLORFENICOL chloramphenicol/florfenicol efflux MFS transporter FexA +fieF CDF_efflux fieF - 0.00 0.00 80.00 80.00 90.00 85.00 90.00 25.00 1 STRESS METAL CDF family cation-efflux transporter FieF +fim41a VIRULENCE_Ecoli fim41a - 0.00 0.00 91.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE fimbrial adhesin F41 protein Fim41a +floR2 floR floR2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL/FLORFENICOL chloramphenicol/florfenicol efflux MFS transporter FloR2 +floR cmlA_floR floR NF000219.1 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL CHLORAMPHENICOL/FLORFENICOL chloramphenicol/florfenicol efflux MFS transporter FloR +focG VIRULENCE_Ecoli focG - 0.00 0.00 97.00 90.00 90.00 98.00 90.00 25.00 1 VIRULENCE VIRULENCE F1C fimbria minor subunit FocG +fomA AMR fomA NF000338.1 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin resistance kinase FomA +fomB AMR fomB NF000361.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FomB family phosphonate monophosphate kinase +fos-Crono fos_GT fos NF000339.2 275.00 275.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosA family fosfomycin resistance glutathione transferase +fos-Vibrio fos_GT fos - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosG/FosC2-related fosfomycin resistance glutathione transferase +fosA5_fam fosA_gen fosA NF040540.1 310.00 310.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosA5 family fosfomycin resistance glutathione transferase +fosA7_fam fosA_gen fosA7 NF032892.0 305.00 305.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosA7 family fosfomycin resistance glutathione transferase +fosA8_fam fosA_gen fosA8 NF033933.0 300.00 300.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosA8 family fosfomycin resistance glutathione transferase +fosA_PA1129 fos_GT fosA NF000094.1 275.00 275.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosA family fosfomycin resistance glutathione transferase +fosA_gen fos_GT fosA NF000221.4 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosA family fosfomycin resistance glutathione transferase +fosB-Bcer fosB_gen fosB NF000098.1 295.00 295.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosB family fosfomycin resistance bacillithiol transferase +fosB-Saur fosB_gen fosB NF000085.1 260.00 260.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosB1/FosB3 family fosfomycin resistance bacillithiol transferase +fosB-Sepi fosB_gen fosB NF000063.1 300.00 300.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosB family fosfomycin resistance bacillithiol transferase +fosB_gen fos_gen fosB NF000493.1 240.00 240.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosB/FosD family fosfomycin resistance bacillithiol transferase +fosC2 fos_GT fosC2 NF000074.1 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosC2 family fosfomycin resistance glutathione transferase +fosC AMR fosC NF000122.1 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin resistance kinase FosC +fosD fosB_gen fosD - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin resistance bacillithiol transferase FosD +fosE fosX_gen fosE - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin resistance hydrolase FosE +fosF fos_GT fosF NF000494.1 280.00 280.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin resistance glutathione transferase FosF +fosG fos_GT fosG NF000467.1 240.00 240.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosG family fosfomycin resistance glutathione transferase +fosI fosX_gen fosI - 0.00 0.00 90.00 90.00 90.00 95.00 90.00 25.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin resistance hydrolase FosI +fosK fos_GT fosK NF000495.1 280.00 280.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin resistance glutathione transferase FosK +fosL fos_GT fosL - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin resistance glutathione transferase FosL +fosM1 fosM fosM1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin resistance protein FosM1 +fosM2 fosM fosM2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin resistance protein FosM2 +fosM3 fosM fosM3 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin resistance protein FosM3 +fosM fos_gen fosM NF038306.1 255.00 255.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosM family fosfomycin resistance protein +fosU fos_GT fosU NF038311.1 295.00 295.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosU family fosfomycin resistance glutathione transferase +fosX_gen fos_gen fosX NF000222.1 170.00 170.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosX/FosE/FosI family fosfomycin resistance hydrolase +fosX fosX_gen fosX - 0.00 0.00 84.00 90.00 90.00 90.00 90.00 35.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin resistance hydrolase FosX +fos_A3_A4 fosA_gen fosA NF000075.1 275.00 275.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosA3/FosA4 family fosfomycin resistance glutathione transferase +fos_A_A2 fosA_gen fosA NF000026.1 275.00 275.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN FosA/FosA2 family fosfomycin resistance glutathione transferase +fos_GT fos_gen fos NF000496.1 190.00 190.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin resistance glutathione transferase +fos_gen AMR fos - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN fosfomycin inactivation enzyme +fos_related fos_gen fos NF000125.1 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FOSFOMYCIN FOSFOMYCIN Fos family putative thiol transferase +fusBCD_gen AMR fus - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FUSIDIC ACID FUSIDIC ACID FusB/FusC/FusD family EF-G-binding protein +fusB_set fusBCD_gen fusB NF000340.1 375.00 375.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FUSIDIC ACID FUSIDIC ACID FusB family fusidic acid resistance EF-G-binding protein +fusB fusB_set fusB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FUSIDIC ACID FUSIDIC ACID fusidic acid resistance EF-G-binding protein FusB +fusC_set fusBCD_gen fusC NF000341.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FUSIDIC ACID FUSIDIC ACID FusC family fusidic acid resistance EF-G-binding protein +fusD fusBCD_gen fusD NF000460.1 450.00 450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FUSIDIC ACID FUSIDIC ACID FusD family fusidic acid resistance EF-G-binding protein +fusF fusBCD_gen fusF NF000503.1 435.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FUSIDIC ACID FUSIDIC ACID fusidic acid resistance EF-G-binding protein FusF +fusH AMR fusH NF000157.1 999.00 999.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR FUSIDIC ACID FUSIDIC ACID fusidic acid esterase FusH +gamma-1 gamma eae - 0.00 0.00 92.50 90.00 90.00 94.00 90.00 25.00 1 VIRULENCE VIRULENCE INTIMIN GAMMA intimin type gamma +gamma-2 gamma eae - 0.00 0.00 92.50 90.00 90.00 94.00 90.00 25.00 1 VIRULENCE VIRULENCE INTIMIN THETA intimin type theta +gamma-3 gamma eae - 0.00 0.00 92.50 90.00 90.00 94.00 90.00 25.00 1 VIRULENCE VIRULENCE INTIMIN GAMMA intimin type gamma +gamma-4 gamma eae - 0.00 0.00 92.50 90.00 90.00 94.00 90.00 25.00 1 VIRULENCE VIRULENCE INTIMIN GAMMA intimin type gamma +gamma-5 gamma eae - 0.00 0.00 92.50 90.00 90.00 94.00 90.00 25.00 1 VIRULENCE VIRULENCE INTIMIN GAMMA intimin type gamma +gamma-6 gamma eae - 0.00 0.00 92.50 90.00 90.00 94.00 90.00 25.00 1 VIRULENCE VIRULENCE INTIMIN GAMMA intimin type gamma +gamma eae_typing_E._coli eae - 0.00 0.00 92.50 90.00 90.00 94.00 90.00 25.00 1 VIRULENCE VIRULENCE INTIMIN GAMMA intimin type gamma +garos_AAA AMR gar_fam NF038208.1 170.00 170.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN garosamine-type aminoglycoside resistance ATP-binding protein +gar garos_AAA gar - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN gentamicin resistance ATP-binding protein Gar +golS METAL golS - 0.00 0.00 92.00 90.00 90.00 94.00 90.00 25.00 1 STRESS METAL GOLD GOLD Au(I) sensor transcriptional regulator GolS +golT P-type_ATPase golT - 0.00 0.00 92.00 90.00 90.00 92.00 90.00 25.00 1 STRESS METAL COPPER/GOLD COPPER/GOLD gold/copper-translocating P-type ATPase GolT +grdA garos_AAA grdA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN gentamicin resistance ATP-binding protein GrdA +grm rmt grm - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE Grm family 16S rRNA (guanine(1405)-N(7))-methyltransferase +hbp_auto auto_tox - - 0 0 94.00 90.00 90.00 96.00 90.00 25.00 0 VIRULENCE VIRULENCE hemoglobin-binding protease autotransporter Hbp +hld VIRULENCE_Saur hld - 0.00 0.00 91.00 90.00 90.00 91.00 90.00 90.00 1 VIRULENCE VIRULENCE delta-hemolysin +hlgA VIRULENCE_Saur hlgA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE bi-component gamma-hemolysin HlgAB subunit A +hlgB VIRULENCE_Saur hlgB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE bi-component gamma-hemolysin HlgAB/HlgCB subunit B +hlgC VIRULENCE_Saur hlgC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE bi-component gamma-hemolysin HlgCB subunit C +hlyA-alpha VIRULENCE_Ecoli hlyA-alpha - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE RTX toxin hemolysin HlyA +hlyE VIRULENCE_Ecoli hlyE - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE hemolysin HlyE +hmrM MATE_efflux hmrM - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX sodium-coupled multidrug efflux MATE transporter HmrM +hugA bla-A hugA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM class A beta-lactamase +iap VIRULENCE_Cperf iap - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE ADP-ribosylating binary toxin iota enzymatic subunit Ia +ibeA VIRULENCE_Ecoli ibeA - 0.00 0.00 90.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE putative intracellular survival FAD-dependent oxidoreductase IbeA +ibp VIRULENCE_Cperf ibp - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE ADP-ribosylating binary toxin iota binding subunit Ib +icaC VIRULENCE_Saur icaC - 0.00 0.00 50.00 90.00 90.00 75.00 90.00 40.00 1 VIRULENCE VIRULENCE polysaccharide intercellular adhesin biosynthesis/export protein IcaC +icr-Mo pmrC_gen icr-Mo - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR COLISTIN COLISTIN phosphoethanolamine--lipid A transferase ICR-Mo +iha OM_sidero iha - 0.00 0.00 90.00 90.00 90.00 93.00 90.00 25.00 1 VIRULENCE VIRULENCE bifunctional siderophore receptor/adhesin Iha +iota-1 iota eae - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE INTIMIN IOTA intimin type iota +iota eae_typing_E._coli eae - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE INTIMIN IOTA intimin type iota +ipaD VIRULENCE_Ecoli ipaD - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 1 VIRULENCE VIRULENCE type III secretion system needle tip complex protein IpaD +ipaH1 ipa_gen ipaH1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE T3SS effector E3 ubiquitin-protein ligase IpaH1/H6 +ipaH2 ipa_gen ipaH2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE T3SS effector E3 ubiquitin-protein ligase IpaH2 +ipaH3 ipa_gen ipaH3 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE T3SS effector E3 ubiquitin-protein ligase IpaH3 +ipaH4 ipa_gen ipaH4 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE T3SS effector E3 ubiquitin-protein ligase IpaH4/H7 +ipaH5 ipa_gen ipaH5 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE T3SS effector E3 ubiquitin-protein ligase IpaH5 +ipaH9.8 ipa_gen ipaH9.8 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE T3SS effector E3 ubiquitin-protein ligase IpaH9.8 +ipa_gen VIRULENCE_Ecoli ipa - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE T3SS effector E3 ubiquitin-protein ligase +ireA OM_sidero ireA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE TonB-dependent siderophore receptor IreA +iri rox_gen iri NF000343.1 950.00 950.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMPIN rifampin monooxygenase Iri +iroB VIRULENCE iroB - 0.00 0.00 84.00 90.00 90.00 88.00 90.00 25.00 1 VIRULENCE VIRULENCE salmochelin biosynthesis C-glycosyltransferase IroB +iroC VIRULENCE iroC - 0.00 0.00 75.00 90.00 90.00 82.00 90.00 25.00 1 VIRULENCE VIRULENCE salmochelin/enterobactin export ABC transporter IroC +iroD VIRULENCE iroD - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE catecholate siderophore esterase IroD +iroE VIRULENCE_Ecoli iroE - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE catecholate siderophore esterase IroE +iroN OM_sidero iroN - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 1 VIRULENCE VIRULENCE siderophore salmochelin receptor IroN +iss VIRULENCE_Ecoli iss - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE increased serum survival lipoprotein Iss +iucA VIRULENCE_Ecoli iucA - 0.00 0.00 73.00 80.00 90.00 83.00 90.00 25.00 1 VIRULENCE VIRULENCE aerobactin synthase IucA +iucB VIRULENCE iucB - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE N(6)-hydroxylysine O-acetyltransferase IucB +iucC VIRULENCE iucC - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE NIS family aerobactin synthetase IucC +iucD VIRULENCE iucD - 0.00 0.00 82.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE NADPH-dependent L-lysine N(6)-monooxygenase IucD +iutA VIRULENCE_Ecoli iutA - 0.00 0.00 77.00 80.00 90.00 85.00 90.00 25.00 1 VIRULENCE VIRULENCE ferric aerobactin receptor IutA +kamB npmA_gen kamB NF000363.1 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE 16S rRNA (adenine(1408)-N(1))-methyltransferase KamB +katP VIRULENCE_Ecoli katP - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE catalase/peroxidase KatP +kdeA MFS_efflux kdeA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux MFS transporter KdeA +klaB METAL klaB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL TELLURIUM TELLURIUM tellurium resistance system protein klaB +klaC METAL klaC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL TELLURIUM TELLURIUM tellurium resistance system protein klaC +lambda-2 lambda eae - 0.00 0.00 95.00 90.00 90.00 96.00 90.00 70.00 1 VIRULENCE VIRULENCE INTIMIN LAMBDA intimin type lambda +lambda eae_typing_E._coli eae - 0.00 0.00 95.00 90.00 90.00 96.00 90.00 70.00 1 VIRULENCE VIRULENCE INTIMIN LAMBDA intimin type lambda +lin abc-f lin - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE lmo0919 family lincomycin resistance ABC-F type ribosomal protection protein +lmrC_abcf abc-f lmrC - 0.00 0.00 85.00 90.00 90.00 90.00 90.00 25.00 1 AMR AMR FOSFOMYCIN FOSFOMYCIN ABC-F type ribosomal protection protein LmrC +lmrS BIOCIDE lmrS - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS BIOCIDE MACROLIDE/PHENICOL CHLORAMPHENICOL/ERYTHROMYCIN multidrug efflux MFS transporter LmrS +lngA pilus lngA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE type IV pilus longus major pilin +lnu(A) lnu_AE lnu(A) NF000236.1 300.00 300.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE lincosamide nucleotidyltransferase Lnu(A) +lnu(AN2) lnu_AE lnu(AN2) NF000153.1 340.00 340.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE lincosamide nucleotidyltransferase Lnu(AN2) +lnu(B) lnu_BFG lnu(B) NF000235.3 525.00 525.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE lincosamide nucleotidyltransferase Lnu(B) +lnu(C) lnu_CDP lnu(C) NF000141.1 300.00 300.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE lincosamide nucleotidyltransferase Lnu(C) +lnu(D) lnu_CDP lnu(D) NF000017.1 325.00 325.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE lincosamide nucleotidyltransferase Lnu(D) +lnu(E) lnu_AE lnu(E) NF000478.2 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE lincosamide nucleotidyltransferase Lnu(E) +lnu(F) lnu_BFG lnu(F) NF000119.1 450.00 450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE lincosamide nucleotidyltransferase Lnu(F) +lnu(G) lnu_BFG lnu(G) NF033182.0 525.00 525.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE lincosamide nucleotidyltransferase Lnu(G) +lnu(P) lnu_CDP lnu(P) NF000061.1 300.00 300.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE lincosamide nucleotidyltransferase Lnu(P) +lnu_AE lnu lnu - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE lincosamide nucleotidyltransferase +lnu_BFG lnu lnu - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE Lnu(B)/Lnu(F)/Lnu(G) family lincosamide nucleotidyltransferase +lnu_CDP lnu lnu - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE Lnu(C)/Lnu(D)/Lnu(P) family lincosamide nucleotidyltransferase +lnu AMR lnu - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE lincosamide nucleotidyltransferase +lpfA-O113 lpfA_gen lpfA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE long polar fimbria major subunit LpfA-O113 +lpfA1 lpfA_gen lpfA1 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE long polar fimbria major subunit LpfA1 +lpfA2 lpfA_gen lpfA2 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE long polar fimbria major subunit LpfA2 +lpfA_gen VIRULENCE_Ecoli lpfA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE long polar fimbria major subunit LpfA +lsa(A) lsa lsa(A) - 0.00 0.00 84.00 90.00 90.00 88.00 90.00 25.00 2 AMR AMR LINCOSAMIDE/STREPTOGRAMIN LINCOSAMIDE/STREPTOGRAMIN ABC-F type ribosomal protection protein Lsa(A) +lsa(B) lsa lsa(B) - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR LINCOSAMIDE/STREPTOGRAMIN LINCOSAMIDE/STREPTOGRAMIN ABC-F type ribosomal protection protein Lsa(B) +lsa(C) lsa lsa(C) - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR LINCOSAMIDE/STREPTOGRAMIN LINCOSAMIDE/STREPTOGRAMIN ABC-F type ribosomal protection protein Lsa(C) +lsa(D) lsa lsa(D) - 0.00 0.00 83.00 90.00 90.00 93.00 90.00 25.00 2 AMR AMR LINCOSAMIDE/STREPTOGRAMIN LINCOSAMIDE/STREPTOGRAMIN ABC-F type ribosomal protection protein Lsa(D) +lsa(E) lsa lsa(E) - 0.00 0.00 90.00 90.00 90.00 95.00 90.00 25.00 2 AMR AMR LINCOSAMIDE/STREPTOGRAMIN LINCOSAMIDE/STREPTOGRAMIN ABC-F type ribosomal protection protein Lsa(E) +lsa abc-f lsa NF000167.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE/STREPTOGRAMIN LINCOSAMIDE/STREPTOGRAMIN Lsa family ABC-F type ribosomal protection protein +ltcA VIRULENCE_Ecoli ltcA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE heat-labile enterotoxin LT subunit A +lukD VIRULENCE_Saur lukD - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE bi-component leukocidin LukED subunit D +lukE VIRULENCE_Saur lukE - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE bi-component leukocidin LukED subunit E +lukF-PV VIRULENCE_Saur lukF-PV - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE Panton-Valentine bi-component leukocidin subunit F +lukS-PV VIRULENCE_Saur lukS-PV - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE Panton-Valentine bi-component leukocidin subunit S +macro_glyco AMR - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR MACROLIDE MACROLIDE macrolide glycosyltransferase +mchB VIRULENCE_Ecoli mchB - 0.00 0.00 99.00 90.00 95.00 99.00 95.00 40.00 1 VIRULENCE VIRULENCE microcin H47 +mchF VIRULENCE_Ecoli mchF - 0.00 0.00 96.00 90.00 90.00 97.00 90.00 25.00 1 VIRULENCE VIRULENCE microcin H47 export transporter peptidase/ATP-binding subunit MchF +mco multi_Cu_ox mco - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER COPPER multi-copper oxidase Mco +mcr-10 pmrC_gen mcr-10 NF033862.2 1250.00 1250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR COLISTIN COLISTIN MCR-10 family phosphoethanolamine--lipid A transferase +mcr-1 pmrC_gen mcr-1 NF000465.1 1100.00 1100.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR COLISTIN COLISTIN MCR-1 family phosphoethanolamine--lipid A transferase +mcr-2 pmrC_gen mcr-2 NF012159.0 1200.00 1200.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR COLISTIN COLISTIN MCR-2 family phosphoethanolamine--lipid A transferase +mcr-3_set pmrC_gen mcr-3 NF033409.0 1075.00 1075.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR COLISTIN COLISTIN MCR-3 family phosphoethanolamine--lipid A transferase +mcr-3 mcr-3_set mcr-3 NF033408.5 1225.00 1225.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR COLISTIN COLISTIN MCR-3 family phosphoethanolamine--lipid A transferase +mcr-4 pmrC_gen mcr-4 NF033462.1 1225.00 1225.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR COLISTIN COLISTIN MCR-4 family phosphoethanolamine--lipid A transferase +mcr-5 pmrC_gen mcr-5 NF033463.1 1250.00 1250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR COLISTIN COLISTIN MCR-5 family phosphoethanolamine--lipid A transferase +mcr-6 pmrC_gen mcr-6 NF033670.1 1235.00 1235.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR COLISTIN COLISTIN MCR-6 family phosphoethanolamine--lipid A transferase +mcr-7 pmrC_gen mcr-7 NF033671.1 1250.00 1250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR COLISTIN COLISTIN MCR-7 family phosphoethanolamine--lipid A transferase +mcr-8 pmrC_gen mcr-8 NF033669.1 1250.00 1250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR COLISTIN COLISTIN MCR-8 family phosphoethanolamine--lipid A transferase +mcr-9 pmrC_gen mcr-9 NF033836.1 1240.00 1240.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR COLISTIN COLISTIN MCR-9 family phosphoethanolamine--lipid A transferase +mdsA RND-peri mdsA - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter periplasmic adaptor subunit MdsA +mdsB RND-IM mdsB - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter permease subunit MdsB +mdtM MFS_efflux mdtM - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux MFS transporter MdtM +mecA-ceftar mecA mecA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN ceftaroline-resistant PBP2a family peptidoglycan transpeptidase MecA +mecA1 mec_gen mecA1 NF000410.1 1480.00 1480.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA1 +mecA2 mec_gen mecA2 NF000408.1 1525.00 1525.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA2 +mecA mec_gen mecA NF000409.1 1490.00 1490.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA +mecB mec_gen mecB NF000406.1 1450.00 1450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecB +mecC2 mec_gen mecC2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecC2 +mecC3 mec_gen mecC3 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecC3 +mecC mec_gen mecC NF000407.1 1500.00 1500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecC +mecD mec_gen mecD NF033378.1 1450.00 1450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecD +mecI_of_mecA mecI mecI NF000243.1 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN mecA-type methicillin resistance repressor MecI +mecI_of_mecC mecI mecI NF000244.1 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN mecC-type methicillin resistance repressor MecI +mecI blaI_gen mecI - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN methicillin resistance repressor MecI +mecR1 blaR1_gen mecR1 NF033109.1 1200.00 1200.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN beta-lactam sensor/signal transducer MecR1 +mec_gen AMR mec NF000237.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM METHICILLIN PBP2a family beta-lactam-resistant peptidoglycan transpeptidase +mef(A) mef_gen mef(A) NF000245.1 675.00 675.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE ERYTHROMYCIN macrolide efflux MFS transporter Mef(A) +mef(B) mef_gen mef(B) NF000051.1 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE macrolide efflux MFS transporter Mef(B) +mef(C) mef_gen mef(C) NF000246.1 870.00 870.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE macrolide efflux MFS transporter Mef(C) +mef(D) mef_gen mef(D) - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 35.00 2 AMR AMR MACROLIDE ERYTHROMYCIN macrolide efflux MFS transporter Mef(D) +mef(En2) mef_gen mef(En2) NF000154.1 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE macrolide efflux MFS transporter Mef(En2) +mef(F) mef_gen mef(F) - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 2 AMR AMR MACROLIDE MACROLIDE macrolide efflux MFS transporter Mef(F) +mef_gen MFS_efflux mef - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE Mef family macrolide efflux MFS transporter +mepA MATE_efflux mepA NF000131.1 850.00 850.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux MATE transporter MepA +merA METAL merA TIGR02053.1 454.45 454.45 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY MERCURY mercury(II) reductase +merB1 merB merB1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY ORGANOMERCURY organomercurial lyase MerB1 +merB_gen METAL merB - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL organomercurial lyase MerB +merB merB_gen merB NF033555.1 200.00 200.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY ORGANOMERCURY organomercurial lyase MerB +merC METAL merC NF033784.1 140.00 140.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY ORGANOMERCURY organomercurial transporter MerC +merD METAL merD NF033783.1 170.00 170.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY MERCURY mercury resistance co-regulator MerD +merE METAL merE NF010310.2 80.00 80.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY MERCURY broad-spectrum mercury transporter MerE +merF METAL merF NF033565.0 50.00 50.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY MERCURY mercury resistance system transport protein MerF +merG METAL merG NF033786.1 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY PHENYLMERCURY phenylmercury resistance protein MerG +merP METAL merP - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY MERCURY mercury resistance system substrate-binding protein MerP +merR_Bc1 merR_gen merR1 - 0.00 0.00 82.00 90.00 90.00 88.00 90.00 25.00 1 STRESS METAL MERCURY MERCURY mercury resistance transcriptional regulator MerR1 +merR_Bc2 merR_gen merR2 - 0.00 0.00 76.00 90.00 90.00 85.00 90.00 25.00 1 STRESS METAL MERCURY MERCURY mercury resistance transcriptional regulator MerR2 +merR_Ps merR_gen merR NF010315.0 261.00 261.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY MERCURY mercury resistance transcriptional regulator MerR +merR_gen METAL merR - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY MERCURY mercury resistance transcriptional regulator MerR +merT_RC607 merT_gen merT NF033560.1 130.00 130.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY MERCURY mercuric transport protein MerT +merT_gen METAL merT - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL mercury resistance system transport protein MerT +merT_pI258 merT_gen merT - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL MERCURY MERCURY mercuric transport protein MerT +merT merT_gen merT - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL MERCURY MERCURY mercuric transport protein MerT +met_repress METAL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL metal-sensing transcriptional repressor +mexA RND-peri mexA NF033834.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter periplasmic adaptor subunit MexA +mexE RND-peri mexE NF000249.1 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR EFFLUX EFFLUX MexE family multidrug efflux RND transporter periplasmic adaptor subunit +mexX_amrA RND-peri mexX - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR MexX/AmrA family multidrug efflux RND transporter periplasmic adaptor subunit +mexX mexX_amrA mexX - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter periplasmic adaptor subunit MexX +mgt macro_glyco mgt NF033129.1 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE macrolide-inactivating glycosyltransferase +mph(A) mph_gen mph(A) NF000254.1 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE Mph(A) family macrolide 2'-phosphotransferase +mph(B) mph_gen mph(B) NF000242.2 615.00 615.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE Mph(B) family macrolide 2'-phosphotransferase +mph(C) mph_gen mph(C) NF000240.1 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE Mph(C) family macrolide 2'-phosphotransferase +mph(E) mph_3 mph(E) NF012158.1 640.00 640.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE Mph(E) family macrolide 2'-phosphotransferase +mph(F) mph_gen mph(F) NF000255.1 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE Mph(F) family macrolide 2'-phosphotransferase +mph(G) mph_3 mph(G) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE Mph(G) family macrolide 2'-phosphotransferase +mphH mph_gen mphH - 0.00 0.00 84.00 90.00 90.00 88.00 90.00 25.00 2 AMR AMR MACROLIDE MACROLIDE macrolide 2'-phosphotransferase MphH +mphJ mph_gen mphJ - 0.00 0.00 84.00 90.00 90.00 88.00 90.00 25.00 2 AMR AMR MACROLIDE ERYTHROMYCIN/TELITHROMYCIN/TYLOSIN macrolide 2'-phosphotransferase MphJ +mphK mph_gen mphK - 0.00 0.00 80.00 90.00 90.00 88.00 90.00 25.00 2 AMR AMR MACROLIDE MACROLIDE macrolide 2'-phosphotransferase MphK +mphL mph_gen mphL NF038057.1 612.00 612.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE macrolide 2'-phosphotransferase MphL +mphM mph_gen mphM NF038056.1 610.00 610.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE macrolide 2'-phosphotransferase MphM +mphN mph_gen mphN - 0.00 0.00 84.00 90.00 90.00 88.00 90.00 25.00 2 AMR AMR MACROLIDE MACROLIDE macrolide 2'-phosphotransferase MphN +mph_3 mph_gen mph NF000241.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE Mph(E)/Mph(G) family macrolide 2'-phosphotransferase +mph_gen AMR mph - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE macrolide phosphotransferase +mrdH rcnA_gen mrdH - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER/NICKEL COPPER/NICKEL Ni(II)/Co(II) efflux transporter permease subunit MrdH +mreA met_repress mreA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL metal-sensing transcriptional repressor MreA +msr(A) msr msr(A) NF000256.1 1100.00 1100.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE ABC-F type ribosomal protection protein Msr(A) +msr(C) msr msr(C) - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 2 AMR AMR MACROLIDE MACROLIDE ABC-F type ribosomal protection protein Msr(C) +msr(D) msr msr(D) - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 2 AMR AMR MACROLIDE ERYTHROMYCIN ABC-F type ribosomal protection protein Msr(D) +msr(E) msr msr(E) - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 2 AMR AMR MACROLIDE MACROLIDE ABC-F type ribosomal protection protein Msr(E) +msr(F) msr msrF - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 2 AMR AMR MACROLIDE MACROLIDE ABC-F type ribosomal protection protein Msr(F) +msr(G) msr msr(G) - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 2 AMR AMR MACROLIDE MACROLIDE ABC-F type ribosomal protection protein Msr(G) +msr(H) msr msrH - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 2 AMR AMR MACROLIDE MACROLIDE ABC-F type ribosomal protection protein Msr(H) +msr abc-f msr NF000168.1 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE Msr family ABC-F type ribosomal protection protein +mtrA_Ngon efflux_TF mtrA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX efflux transporter MtrCDE transcriptional activator MtrA +mtrC RND-peri mtrC - 0.00 0.00 88.00 90.00 90.00 90.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter periplasmic adaptor subunit MtrC +mtrF BIOCIDE mtrF - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS BIOCIDE EFFLUX EFFLUX AbgT family antimetabolite efflux transporter MtrF +mtrR EFFLUX mtrR - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux system transcriptional repressor MtrR +multi_CopA multi_Cu_ox copA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL COPPER COPPER laccase-like oxidase CopA +multi_Cu_ox METAL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL multi-copper oxidase +mupA AMR mupA NF000257.1 1900.00 1900.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MUPIROCIN MUPIROCIN mupirocin-resistant isoleucine--tRNA ligase MupA +mupB AMR mupB NF000258.1 1900.00 1900.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MUPIROCIN MUPIROCIN mupirocin-resistant isoleucine--tRNA ligase MupB +myrA rlmA(II)_gen myrA NF000476.1 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (guanine(748)-N(1))-methyltransferase MyrA +nccH METAL nccH - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 1 STRESS METAL CADMIUM/COBALT/NICKEL CADMIUM/COBALT/NICKEL nickel/cobalt/cadmium resistance ECF sigma factor NccH +nccX PERI-SENSOR nccX - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL CADMIUM/COBALT/NICKEL CADMIUM/COBALT/NICKEL periplasmic metal sensor NccX +ncrA METAL ncrA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL NICKEL NICKEL Metal Resistance +ncrB met_repress ncrB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL NICKEL NICKEL nickel-sensing transcriptional repressor NcrB +ncrC rcnA_gen ncrC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL COPPER/NICKEL COPPER/NICKEL Ni(II)/Co(II) efflux transporter permease subunit NcrC +ncrY METAL ncrY - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL NICKEL NICKEL nickel resistance OB fold protein NcrY +netB VIRULENCE_Cperf netB - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE necrotizing enteritis toxin NetB +netF VIRULENCE_Cperf netF - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE necrotizing enteritis toxin NetF +nfaE VIRULENCE_Ecoli nfaE - 0.00 0.00 92.00 90.00 90.00 94.00 90.00 25.00 1 VIRULENCE VIRULENCE Dr family non-fimbrial adhesin I chaperone NfaE +nimABCDEF AMR nim NF000261.1 260.00 260.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR NITROIMIDAZOLE NITROIMIDAZOLE NimABCDEF family nitroimidazole resistance protein +nimA nimABCDEF nimA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR NITROIMIDAZOLE NITROIMIDAZOLE nitroimidazole resistance protein NimA +nimB nimABCDEF nimB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR NITROIMIDAZOLE NITROIMIDAZOLE nitroimidazole resistance protein NimB +nimC nimABCDEF nimC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR NITROIMIDAZOLE NITROIMIDAZOLE nitroimidazole resistance protein NimC +nimD nimABCDEF nimD - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR NITROIMIDAZOLE NITROIMIDAZOLE nitroimidazole resistance protein NimD +nimE nimABCDEF nimE - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR NITROIMIDAZOLE NITROIMIDAZOLE nitroimidazole resistance protein NimE +nimIJ AMR nimIJ NF000262.1 270.00 270.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR NITROIMIDAZOLE NITROIMIDAZOLE NimIJ family nitroimidazole resistance protein +nimI nimIJ nimI - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR NITROIMIDAZOLE NITROIMIDAZOLE nitroimidazole resistance protein NimI +nimJ nimIJ nimJ - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR NITROIMIDAZOLE NITROIMIDAZOLE nitroimidazole resistance protein NimJ +nirA METAL nirA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL NICKEL NICKEL nickel resistance membrane nickel efflux protein NirA +nirB met_repress nirB - 0.00 0.00 99.00 90.00 90.00 99.00 90.00 25.00 1 STRESS METAL NICKEL NICKEL nickel-sensing transcriptional repressor NirB +nirD METAL nirD - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL NICKEL NICKEL nickel resistance OB fold protein NirD +nleA VIRULENCE_Ecoli nleA - 0.00 0.00 85.00 90.00 90.00 88.00 90.00 80.00 1 VIRULENCE VIRULENCE type III secretion system effector NleA +nleB2 VIRULENCE_Ecoli nleB2 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE type III secretion system effector arginine glycosyltransferase NleB2 +nleB VIRULENCE_Ecoli nleB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE type III secretion system effector arginine glycosyltransferase NleB +nleC VIRULENCE_Ecoli nleC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE type III secretion system effector zinc metalloprotease NleC +norM MATE_efflux norM NF000263.1 950.00 950.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR EFFLUX EFFLUX sodium-coupled multidrug efflux MATE transporter NorM +npmA_gen AMR - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE 16S rRNA (adenine(1408)-N(1))-methyltransferase +npmA npmA_gen npmA NF000030.1 450.00 450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE 16S rRNA (adenine(1408)-N(1))-methyltransferase NpmA +nreB METAL nreB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL NICKEL NICKEL nickel resistance MFS transporter NreB +nshR_tsnR AMR nshR NF000477.1 425.00 360.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR THIOSTREPTON THIOSTREPTON NshR/TsnR family 23S rRNA methyltransferase +nshR nshR_tsnR nshR NF000035.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR THIOSTREPTON THIOSTREPTON NshR family nosiheptide/thiostrepton resistance 23S rRNA methyltransferase +ole(B) abcf-produ ole(B) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE ABC-F type ribosomal protection protein Ole(B) +oleD mgt oleD - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE oleandomycin glycosyltransferase OleD +oleI macro_glyco oleI NF000362.1 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE OleI family self-immunity macrolide glycosyltransferase +optrA abc-f optrA NF000514.1 1450.00 1000.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL/OXAZOLIDINONE FLORFENICOL/OXAZOLIDINONE ABC-F type ribosomal protection protein OptrA +oqxA RND-peri oqxA NF000272.1 875.00 875.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL/QUINOLONE PHENICOL/QUINOLONE multidrug efflux RND transporter periplasmic adaptor subunit OqxA +oqxB RND-IM oqxB NF000037.1 2200.00 2200.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL/QUINOLONE PHENICOL/QUINOLONE multidrug efflux RND transporter permease subunit OqxB +otr(A) tet_rib_protect otr(A) NF000120.3 900.00 900.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection protein Otr(A) +otr(B) tet_MFS_efflux otr(B) NF000095.1 999.00 999.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE oxytetracycline resistance efflux MFS transporter OtrB +papA VIRULENCE_Ecoli papA - 0.00 0.00 82.00 90.00 90.00 85.00 90.00 25.00 1 VIRULENCE VIRULENCE P fimbria major subunit PapA +papC VIRULENCE_Ecoli papC - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE P fimbrial usher protein PapC +papE VIRULENCE_Ecoli papE - 0.00 0.00 90.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE P fimbrial minor subunit PapE +papF VIRULENCE_Ecoli papF - 0.00 0.00 90.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE P fimbrial tip protein PapF +papG-III papG papG-III - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE P fimbria tip G-adhesin PapG-III +papG-II papG papG-II - 0.00 0.00 95.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE P fimbria tip G-adhesin PapG-II +papG-I papG papG-I - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE P fimbria tip G-adhesin PapG-I +papG VIRULENCE_Ecoli papG - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE P fimbria tip G-adhesin +papH VIRULENCE_Ecoli papH - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE P fimbrial minor subunit PapH +pcoA multi_Cu_ox pcoA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER COPPER multicopper oxidase PcoA +pcoB METAL pcoB - 0.00 0.00 99.00 90.00 90.00 99.00 90.00 25.00 1 STRESS METAL COPPER COPPER copper-binding protein PcoB +pcoC copC pcoC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER COPPER copper resistance system metallochaperone PcoC +pcoD copD pcoD - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER COPPER copper resistance inner membrane protein PcoD +pcoE METAL pcoE - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER COPPER copper resistance system metallochaperone PcoE +pcoR copR_gen pcoR - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER COPPER copper response regulator transcription factor PcoR +pcoS METAL pcoS - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER COPPER copper resistance membrane spanning protein PcoS +penA-A_Burk bla-A penA NF000320.2 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM PenA family class A beta-lactamase +penI_Bp bla-A penI NF000321.2 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM BETA-LACTAM PenI family class A extended-spectrum beta-lactamase +perA VIRULENCE_Ecoli perA - 0.00 0.00 90.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE BFP system transcriptional regulator PerA +pet auto_tox pet - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease autotransporter toxin Pet +pexA MFS_efflux pexA NF000072.1 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PHENICOL PHENICOL phenicol efflux MFS transporter PexA +pfoA VIRULENCE_Cperf pfoA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE cholesterol-dependent cytolysin perfringolysin O +pic_auto auto_tox pic - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease autotransporter toxin Pic +pilus VIRULENCE_Ecoli pil - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE type IV pilus protein +pmrA MFS_efflux pmrA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR QUINOLONE QUINOLONE multidrug efflux MFS transporter PmrA +pmrC_gen AMR - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR phosphoethanolamine--lipid A transferase +poxtA abc-f poxtA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR MACROLIDE MACROLIDE ABC-F type ribosomal protection protein PoxtA +qacA MFS_efflux_qac qacA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux MFS transporter QacA +qacB MFS_efflux_qac qacB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux MFS transporter QacB +qacCGHJ SMR_efflux qac NF000384.1 160.00 160.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM QacCGHJ group quaternary ammonium compound efflux SMR transporter +qacC qacCGHJ qacC NF000023.1 200.00 200.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux SMR transporter QacC +qacE_gen SMR_qac_int qacE NF000276.2 185.00 185.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux SMR transporter QacE +qacE qacE_gen qacE - 0.00 0.00 97.00 99.00 99.00 97.00 99.00 99.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux SMR transporter QacE +qacF qac_F_L qacF - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux SMR transporter QacF +qacG2 SMR_qac_int qacG2 NF000278.1 220.00 220.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux SMR transporter QacG2 +qacG qacCGHJ qacG NF000277.1 200.00 200.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux SMR transporter QacG +qacH_Lis SMR_efflux qacH - 0.00 0.00 80.00 90.00 90.00 80.00 90.00 25.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux SMR transporter QacH +qacH qacCGHJ qacH NF000279.1 205.00 205.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux SMR transporter QacH +qacJ qacCGHJ qacJ NF012170.0 210.00 210.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux SMR transporter QacJ +qacK SMR_qac_int qacK NF033136.1 205.00 205.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux SMR transporter QacK +qacL qac_F_L qacL - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux SMR transporter QacL +qacR BIOCIDE qacR - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM multidrug-binding transcriptional regulator QacR +qacZ qacH qacZ - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM quaternary ammonium compound efflux SMR transporter QacH +qac_F_L SMR_qac_int qac NF000067.2 205.00 205.00 0.00 0.00 0.00 0.00 0.00 0.00 2 STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM QacF/QacL family quaternary ammonium compound efflux SMR transporter +qepA MFS_efflux qepA NF012169.0 1075.00 1075.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR QUINOLONE QUINOLONE fluoroquinolone efflux MFS transporter QepA +qnrAS qnr qnrAS NF012151.0 490.00 490.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR QUINOLONE QUINOLONE QnrAS family quinolone resistance pentapeptide repeat protein +qnrA qnr qnrA NF000071.4 450.00 450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR QUINOLONE QUINOLONE QnrA family quinolone resistance pentapeptide repeat protein +qnrB qnr qnrB NF000420.1 460.00 460.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR QUINOLONE QUINOLONE QnrB family quinolone resistance pentapeptide repeat protein +qnrC qnr qnrC NF012152.0 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR QUINOLONE QUINOLONE QnrC family quinolone resistance pentapeptide repeat protein +qnrD qnr qnrD NF000139.2 425.00 425.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR QUINOLONE QUINOLONE QnrD family quinolone resistance pentapeptide repeat protein +qnrE qnr qnrE NF033375.2 480.00 480.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR QUINOLONE QUINOLONE QnrE family quinolone resistance pentapeptide repeat protein +qnrS qnr qnrS NF000056.3 460.00 460.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR QUINOLONE QUINOLONE QnrS family quinolone resistance pentapeptide repeat protein +qnrVC qnr qnrVC NF000421.1 460.00 460.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR QUINOLONE QUINOLONE QnrVC family quinolone resistance pentapeptide repeat protein +qnr AMR qnr - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR Qnr family pentapeptide repeat protein +ranA EFFLUX ranA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR multidrug efflux ABC transporter ATP-binding subunit RanA +ranB EFFLUX ranB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR multidrug efflux ABC transporter permease subunit RanB +rcnA_gen METAL - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 STRESS METAL Ni(II)/Co(II) efflux transporter permease subunit +rgt1438 rgt rgt - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMYCIN Rgt1438 family rifamycin-inactivating glycosyltransferase +rgt AMR rgt NF000354.1 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMYCIN rifamycin-inactivating glycosyltransferase Rgt +rho-1 rho eae - 0.00 0.00 90.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE INTIMIN RHO intimin type rho +rho-2 rho eae - 0.00 0.00 90.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE INTIMIN YPSILON intimin type ypsilon +rho-3 rho eae - 0.00 0.00 90.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE INTIMIN RHO intimin type rho +rho eae_typing_E._coli eae - 0.00 0.00 90.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE INTIMIN RHO intimin type rho +rlmA(II)_gen AMR rlmA(II) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE 23S rRNA (guanine(748)-N(1))-methyltransferase +rmpA2 VIRULENCE rmpA2 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE mucoid phenotype regulator RmpA2 +rmpA VIRULENCE rmpA - 0.00 0.00 89.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE mucoid phenotype regulator RmpA +rmpC VIRULENCE rmpC - 0.00 0.00 88.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE mucoid phenotype regulator RmpC +rmpD VIRULENCE rmpD - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE mucoid phenotype synthesis protein RmpD +rmtA rmt rmtA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE RmtA family 16S rRNA (guanine(1405)-N(7))-methyltransferase +rmtB rmt rmtB NF033209.1 525.00 525.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE RmtB family 16S rRNA (guanine(1405)-N(7))-methyltransferase +rmtC rmt rmtC NF000150.1 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE RmtC family 16S rRNA (guanine(1405)-N(7))-methyltransferase +rmtD rmt rmtD NF000007.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE RmtD family 16S rRNA (guanine(1405)-N(7))-methyltransferase +rmtE rmt rmtE NF000069.1 525.00 525.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE RmtE family 16S rRNA (guanine(1405)-N(7))-methyltransferase +rmtF rmt rmtF NF000113.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE RmtF family 16S rRNA (guanine(1405)-N(7))-methyltransferase +rmtG rmt rmtG NF000114.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE RmtG family 16S rRNA (guanine(1405)-N(7))-methyltransferase +rmtH rmt rmtH NF000116.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE RmtH family 16S rRNA (guanine(1405)-N(7))-methyltransferase +rmt AMR rmt NF000466.2 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE Rmt family 16S rRNA (guanine(1405)-N(7))-methyltransferase +rox_gen AMR rox NF033145.1 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMPIN rifampin monooxygenase +rox rox_gen rox - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMPIN rifampin monooxygenase Rox +rpeA auto_tox rpeA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease autotransporter colonization factor RpeA +rphC rph_gen rphC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMYCIN rifamycin-inactivating phosphotransferase RphC +rphD rph_gen rphD - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMYCIN rifamycin-inactivating phosphotransferase RphD +rph_gen AMR rph - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMYCIN rifamycin-inactivating phosphotransferase +rph rph_gen rph NF000283.1 1700.00 1700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR RIFAMYCIN RIFAMYCIN rifamycin-inactivating phosphotransferase Rph +saa VIRULENCE_Ecoli saa - 0.00 0.00 90.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE autoagglutinating adhesin Saa +sab VIRULENCE_Ecoli sab - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE autotransporter adhesin Sab +sak VIRULENCE_Saur sak - 0.00 0.00 90.00 50.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylokinase +sal(A) sal sal(A) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE/STREPTOGRAMIN LINCOSAMIDE/STREPTOGRAMIN ABC-F type ribosomal protection protein Sal(A) +sal abc-f sal NF000169.1 1050.00 1050.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE/STREPTOGRAMIN LINCOSAMIDE/STREPTOGRAMIN Sal family ABC-F type ribosomal protection protein +sat2_fam sat sat2 NF000358.1 360.00 360.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOTHRICIN STREPTOTHRICIN streptothricin N-acetyltransferase Sat2 +sat3 sat sat3 NF000359.1 360.00 360.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOTHRICIN STREPTOTHRICIN streptothricin N-acetyltransferase Sat3 +sat4 sat sat4 NF000360.1 380.00 380.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOTHRICIN STREPTOTHRICIN streptothricin N-acetyltransferase Sat4 +satA_Bant sat satA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOTHRICIN STREPTOTHRICIN streptothricin N-acetyltransferase SatA +satA_Bsub sat satA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOTHRICIN STREPTOTHRICIN streptothricin N-acetyltransferase SatA +sat_auto auto_tox sat - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease autotransporter toxin Sat +sat AMR sat - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOTHRICIN STREPTOTHRICIN streptothricin N-acetyltransferase +scn VIRULENCE_Saur scn - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE complement inhibitor SCIN-A +sdeA BIOCIDE sdeA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS BIOCIDE EFFLUX EFFLUX multidrug efflux RND transporter periplasmic adaptor subunit SdeA +sdeB RND-IM sdeB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter permease subunit SdeB +sdeY RND-IM sdeY - 0.00 0.00 90.00 90.00 90.00 90.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter permease subunit SdeY +sea VIRULENCE_Saur sea - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type A +seb VIRULENCE_Saur seb - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type B +sec1 VIRULENCE_Saur sec1 - 0.00 0.00 98.00 90.00 90.00 99.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type C1 +sec2 VIRULENCE_Saur sec2 - 0.00 0.00 98.00 90.00 90.00 99.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type C2 +sec3 VIRULENCE_Saur sec3 - 0.00 0.00 96.00 90.00 90.00 98.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type C3 +sed VIRULENCE_Saur sed - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type D +see VIRULENCE_Saur see - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type E +seh VIRULENCE_Saur seh - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type H +sei VIRULENCE_Saur sei - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type I +sej VIRULENCE_Saur sej - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type J +sek VIRULENCE_Saur sek - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type K +sel26 VIRULENCE_Saur sel26 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type 26 +sel27 VIRULENCE_Saur sel27 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type 27 +sel28 VIRULENCE_Saur sel28 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type 28 +sel30 VIRULENCE_Saur sel30 - 0.00 0.00 99.00 90.00 90.00 99.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type 30 +sel31 VIRULENCE_Saur sel31 - 0.00 0.00 99.00 90.00 90.00 99.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type 31 +sel32 VIRULENCE_Saur sel32 - 0.00 0.00 97.00 90.00 90.00 97.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type 32 +sel33 VIRULENCE_Saur sel33 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type 33 +selV VIRULENCE_Saur selV - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type V +selX VIRULENCE_Saur selX - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin-like toxin X +selZ VIRULENCE_Saur selZ - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type Z +sel VIRULENCE_Saur sel - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type L +sem VIRULENCE_Saur sem - 0.00 0.00 90.00 90.00 90.00 93.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type M +senB VIRULENCE_Ecoli senB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE enterotoxin production-related protein TieB +sen VIRULENCE_Saur sen - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type N +seo VIRULENCE_Saur seo - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type O +sepA auto_tox sepA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease autotransporter toxin SepA +sep VIRULENCE_Saur sep - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type P +sequest AMR - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 AMR AMR BLEOMYCIN BLEOMYCIN bleomycin binding protein +seq VIRULENCE_Saur seq - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type Q +ser VIRULENCE_Saur ser - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type R +ses VIRULENCE_Saur ses - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type S +set VIRULENCE_Saur set - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type T +seu VIRULENCE_Saur seu - 0.00 0.00 91.00 90.00 90.00 93.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type U +sey VIRULENCE_Saur sey - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE staphylococcal enterotoxin type Y +sfaF VIRULENCE_Ecoli sfaF - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE S/F1C fimbrial biogenesis usher protein SfaF/FocD +sfaS VIRULENCE_Ecoli sfaS - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE S-fimbrial adhesin minor subunit SfaS +sgm rmt sgm - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE GENTAMICIN Sgm family 16S rRNA (guanine(1405)-N(7))-methyltransferase +sigA auto_tox sigA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease autotransporter toxin SigA +silA METAL-RND-IM silA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER/SILVER COPPER/SILVER Cu(+)/Ag(+) efflux RND transporter permease subunit SilA +silB cusB_gen silB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER/SILVER COPPER/SILVER Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB +silC METAL silC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER/SILVER COPPER/SILVER Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC +silE METAL silE - 0.00 0.00 80.00 80.00 90.00 85.00 90.00 25.00 1 STRESS METAL SILVER SILVER silver-binding protein SilE +silF METAL silF - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER/SILVER COPPER/SILVER Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone SilF +silP P-type_ATPase silP - 0.00 0.00 84.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL SILVER SILVER Ag(+)-translocating P-type ATPase SilP +silR copR_gen silR - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER/SILVER COPPER/SILVER copper/silver response regulator transcription factor SilR +silS METAL silS - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER/SILVER COPPER/SILVER copper/silver sensor histidine kinase SilS +sinH VIRULENCE_Ecoli sinH NF033423.1 999.00 999.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE intimin-like inverse autotransporter SinH +smdA BIOCIDE smdA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS BIOCIDE EFFLUX EFFLUX multidrug efflux ABC transporter permease/ATP-binding subunit SmdA +smdB BIOCIDE smdB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS BIOCIDE EFFLUX EFFLUX multidrug efflux ABC transporter permease/ATP-binding subunit SmdB +smeF RND-OM smeF - 0.00 0.00 84.00 90.00 90.00 85.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter outer membrane subunit SmeF +smfY MFS_efflux smfY - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux MFS transporter SmfY +spd ant(9) spd - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE ANT(9) family aminoglycoside nucleotidyltransferase Spd +splA VIRULENCE_Saur splA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease SplA +splB VIRULENCE_Saur splB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease SplB +splE VIRULENCE_Saur splE - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE serine protease SplE +spw ant(9) spw - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE ANT(9) family aminoglycoside nucleotidyltransferase Spw +srm(B) abcf-produ srm(B) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE ABC-F type ribosomal protection protein Srm(B) +srpA RND-peri srpA - 0.00 0.00 80.00 80.00 90.00 85.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX solvent efflux RND transporter periplasmic adaptor subunit SrpA +srpB RND-IM srpB - 0.00 0.00 89.00 90.00 90.00 93.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX solvent efflux RND transporter permease subunit SrpB +srpC RND-OM ttgI - 0.00 0.00 80.00 80.00 90.00 85.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX solvent efflux RND transporter outer membrane subunit SrpC +srpR BIOCIDE srpR - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS BIOCIDE EFFLUX EFFLUX solvent efflux transporter antirepressor SrpR +srpS BIOCIDE srpS - 0.00 0.00 80.00 80.00 90.00 85.00 90.00 25.00 1 STRESS BIOCIDE EFFLUX EFFLUX solvent efflux transporter transcriptional repressor SrpS +sslE VIRULENCE_Ecoli sslE NF037973.1 3000.00 3000.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE lipoprotein metalloprotease SslE +ssmE SMR_efflux ssmE - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS BIOCIDE EFFLUX EFFLUX multidrug efflux SMR transporter SsmE +sta1 VIRULENCE_Ecoli sta1 - 0.00 0.00 90.00 90.00 90.00 93.00 90.00 25.00 1 VIRULENCE VIRULENCE heat-stable enterotoxin ST-I group a +sta sat sta NF000487.1 420.00 420.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOTHRICIN STREPTOTHRICIN streptothricin N-acetyltransferase STAT +stb VIRULENCE_Ecoli stb - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE heat-stable enterotoxin ST-II +str ant(6) str NF000062.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR AMINOGLYCOSIDE STREPTOMYCIN streptomycin adenylyltransferase Str +stxA1a stxA1 stxA1a - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX1 STX1A Shiga toxin Stx1a subunit A +stxA1c stxA1 stxA1c - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX1 STX1C Shiga toxin Stx1c subunit A +stxA1d stxA1 stxA1d - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX1 STX1D Shiga toxin Stx1d subunit A +stxA1 stxA stxA1 NF033658.1 675.00 675.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX1 STX1 Shiga toxin Stx1 subunit A +stxA2a stxA2 stxA2a - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2A Shiga toxin Stx2a subunit A +stxA2b stxA2 stxA2b - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2B Shiga toxin Stx2b subunit A +stxA2c stxA2 stxA2c - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2C Shiga toxin Stx2c subunit A +stxA2d stxA2 stxA2d - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2D Shiga toxin Stx2d subunit A +stxA2e stxA2 stxA2e - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2E Shiga toxin Stx2e subunit A +stxA2f stxA2 stxA2f - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2F Shiga toxin Stx2f subunit A +stxA2g stxA2 stxA2g - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2G Shiga toxin Stx2g subunit A +stxA2 stxA stxA2 NF033661.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2 Shiga toxin Stx2 subunit A +stxA stx stxA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE Shiga toxin subunit A +stxB1a stxB1 stxB1a - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX1 STX1A Shiga toxin Stx1a subunit B +stxB1c stxB1 stxB1c - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX1 STX1C Shiga toxin Stx1c subunit B +stxB1d stxB1 stxB1d - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX1 STX1D Shiga toxin Stx1d subunit B +stxB1 stxB stxB1 NF033659.0 175.00 175.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX1 STX1 Shiga toxin Stx1 subunit B +stxB2a stxB2 stxB2a - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2A Shiga toxin Stx2a subunit B +stxB2b stxB2 stxB2b - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2B Shiga toxin Stx2b subunit B +stxB2c stxB2 stxB2c - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2C Shiga toxin Stx2c subunit B +stxB2d stxB2 stxB2d - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2D Shiga toxin Stx2d subunit B +stxB2e stxB2 stxB2e - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2E Shiga toxin Stx2e subunit B +stxB2f stxB2 stxB2f - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2F Shiga toxin Stx2f subunit B +stxB2g stxB2 stxB2g - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2G Shiga toxin Stx2g subunit B +stxB2 stxB stxB2 NF033660.0 165.00 165.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE STX2 STX2 Shiga toxin Stx2 subunit B +stxB stx stxB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE Shiga toxin subunit B +stx VIRULENCE_Ecoli stx - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE Shiga toxin +subA VIRULENCE_Ecoli subA - 0.00 0.00 90.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE subtilase AB5 cytotoxin subunit A +subB VIRULENCE_Ecoli subB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE subtilase AB5 cytotoxin subunit B +sul1 sul sul1 NF000294.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR SULFONAMIDE SULFONAMIDE sulfonamide-resistant dihydropteroate synthase Sul1 +sul2 sul sul2 NF000295.1 575.00 575.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR SULFONAMIDE SULFONAMIDE sulfonamide-resistant dihydropteroate synthase Sul2 +sul3 sul sul3 NF000296.1 475.00 475.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR SULFONAMIDE SULFONAMIDE sulfonamide-resistant dihydropteroate synthase Sul3 +sul4 sul sul4 NF033502.0 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR SULFONAMIDE SULFONAMIDE sulfonamide-resistant dihydropteroate synthase Sul4 +sulR AMR sulR - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR SULFONAMIDE SULFONAMIDE flavin reductase SulR +sulX AMR sulX - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR SULFONAMIDE SULFONAMIDE sulfonamide monooxygenase SulX +sul AMR sul - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR SULFONAMIDE SULFONAMIDE sulfonamide-resistant dihydropteroate synthase +taeA abc-f taeA - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR PLEUROMUTILIN TIAMULIN ABC-F type ribosomal protection protein TaeA +tbtA RND-peri tbtA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter periplasmic adaptor subunit TbtA +tbtB RND-IM tbtB - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter permease subunit TbtB +tbtM adeC-K-oprM tbtM - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter outer membrane channel subunit TbtM +tbtR BIOCIDE tbtR - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 25.00 1 STRESS BIOCIDE EFFLUX EFFLUX tribuytltin resistance regulator TbtR +tccP2 VIRULENCE_Ecoli tccP - 0.00 0.00 94.00 80.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE Tir-cytoskeleton coupling protein TccP2 +tccP VIRULENCE_Ecoli tccP - 0.00 0.00 94.00 80.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE Tir-cytoskeleton coupling protein TccP +tcdA tcd_gen tcdA - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE glycosylating toxin TcdA +tcdB tcd_gen tcdB - 0.00 0.00 85.00 90.00 90.00 92.00 90.00 25.00 1 VIRULENCE VIRULENCE glycosylating toxin TcdB +tcdC VIRULENCE_Cdiff tcdC - 0.00 0.00 91.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE glycosylating toxin anti-sigma factor TcdC +tcdE VIRULENCE_Cdiff tcdE - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE holin-like glycosylating toxin export protein TcdE +tcdR VIRULENCE_Cdiff tcdR - 0.00 0.00 95.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE glycosylating toxin sigma factor TcdR +tcd_gen VIRULENCE_Cdiff - - 0 0 0.00 0.00 0.00 0.00 0.00 0.00 0 VIRULENCE VIRULENCE glycosylating toxin +tcmA MFS_efflux tcmA NF000025.1 999.00 999.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACENOMYCIN TETRACENOMYCIN tetracenomycin C efflux MFS transporter +tcr3 tet_MFS_efflux tcr3 NF000009.1 1000.00 1000.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tcr3 +tcrB P-type_ATPase tcrB - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL COPPER COPPER copper-translocating P-type ATPase TcrB +terB METAL terB - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL TELLURIUM TELLURIUM tellurium resistance membrane protein TerB +terC METAL terC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL TELLURIUM TELLURIUM tellurium resistance membrane protein TerC +terD METAL terD - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL TELLURIUM TELLURIUM tellurium resistance membrane protein TerD +terE METAL terE - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL TELLURIUM TELLURIUM tellurium resistance cAMP binding protein TerE +terW METAL terW - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS METAL TELLURIUM TELLURIUM tellurium resistance protein TerW +terZ METAL terZ - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 STRESS METAL TELLURIUM TELLURIUM tellurium resistance-associated protein TerZ +tet(30) tet_A_B_C_D tet(30) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(30) +tet(31) tet_A_B_C_D tet(31) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(31) +tet(32) tet(M-W-O-S) tet(32) - 0.00 0.00 91.00 90.00 90.00 96.00 90.00 75.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection protein Tet(32) +tet(33) tet_A_B_C_D tet(33) - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(33) +tet(34) tet tet(34) NF000014.1 320.00 320.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE oxytetracycline resistance phosphoribosyltransferase domain-containing protein Tet(34) +tet(35) tet tet(35) NF000013.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux Na+/H+ antiporter family transporter Tet(35) +tet(36) tet_rib_protect tet(36) - 0.00 0.00 90.00 90.00 90.00 92.00 90.00 25.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection protein Tet(36) +tet(37) tet tet(37) NF000059.1 225.00 225.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance NADPH-dependent oxidoreductase Tet(37) +tet(38) tet_MFS_efflux tet(38) NF012176.0 925.00 925.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(38) +tet(39) tet_A_B_C_D tet(39) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(39) +tet(40) tet_MFS_efflux tet(40) NF000049.1 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(40) +tet(41) tet_A_B_C_D tet(41) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(41) +tet(42) tet_MFS_efflux tet(42) NF012177.1 850.00 850.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(42) +tet(43) tet_MFS_efflux tet(43) NF012180.1 999.00 999.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(43) +tet(44) tet(M-W-O-S) tet(44) - 0.00 0.00 93.00 90.00 90.00 94.00 90.00 25.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection protein Tet(44) +tet(45) tet_L_K_45 tet(45) NF012184.0 975.00 975.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(45) +tet(47) tet_destruct tet(47) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline destructase Tet(47) +tet(48) tet_destruct tet(48) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline destructase Tet(48) +tet(49) tet_destruct tet(49) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline destructase Tet(49) +tet(50) tet_destruct tet(50) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline destructase Tet(50) +tet(51) tet_destruct tet(51) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline destructase Tet(51) +tet(52) tet_destruct tet(52) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline destructase Tet(52) +tet(53) tet_destruct tet(53) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline destructase Tet(53) +tet(54) tet_destruct tet(54) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline destructase Tet(54) +tet(55) tet_destruct tet(55) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline destructase Tet(55) +tet(56) tet_destruct tet(56) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline destructase Tet(56) +tet(57) tet_A_B_C_D tet(57) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(57) +tet(59) tet_A_B_C_D tet(59) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(59) +tet(62) tet_A_B_C_D tet(62) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(62) +tet(63) tet_L_K_45 tet(63) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(63) +tet(64) tet_A_B_C_D tet(64) - 0.00 0.00 90.00 90.00 90.00 93.00 90.00 25.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(64) +tet(A) tet_A_B_C_D tet(A) NF012193.0 840.00 840.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(A) +tet(B) tet_A_B_C_D tet(B) NF012190.1 850.00 850.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(B) +tet(C) tet_A_B_C_D tet(C) NF012191.0 850.00 850.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(C) +tet(D) tet_A_B_C_D tet(D) NF012186.0 775.00 775.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(D) +tet(E) tet_A_B_C_D tet(E) NF012187.0 820.00 820.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(E) +tet(G) tet_A_B_C_D tet(G) NF012192.0 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(G) +tet(H) tet(H-J) tet(H) NF012195.0 840.00 840.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(H) +tet(H-J) tet_A_B_C_D tet(H-J) NF012207.0 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE Tet(H)/Tet(J) family tetracycline efflux MFS transporter +tet(J) tet(H-J) tet(J) NF012194.0 870.00 870.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(J) +tet(K) tet_L_K_45 tet(K) NF012183.0 925.00 925.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(K) +tet(L) tet_L_K_45 tet(L) NF012185.0 925.00 925.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(L) +tet(M) tet(M-W-O-S) tet(M) NF012155.1 1420.00 1420.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection protein Tet(M) +tet(M-W-O-S) tet_rib_protect tet_rib_protect NF033148.1 1100.00 1100.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE TetM/TetW/TetO/TetS family tetracycline resistance ribosomal protection protein +tet(O) tet(M-W-O-S) tet(O) - 0.00 0.00 91.00 90.00 90.00 95.00 90.00 25.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection protein Tet(O) +tet(O/32/O) tet(M-W-O-S) tet(O/32/O) - 0.00 0.00 97.50 95.00 95.00 97.50 95.00 95.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection mosaic protein Tet(O/32/O) +tet(O/M/O) tet(M-W-O-S) tet(O/M/O) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection mosaic protein Tet(O/M/O) +tet(O/W) tet(M-W-O-S) tet(O/W) - 0.00 0.00 99.00 98.00 98.00 99.00 98.00 98.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection mosaic protein Tet(O/W) +tet(O/W/32/O) tet(M-W-O-S) tet(O/W/32/O) - 0.00 0.00 97.00 95.00 95.00 98.00 95.00 85.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection mosaic protein Tet(O/W/32/O) +tet(O/W/O) tet(M-W-O-S) tet(O/W/O) - 0.00 0.00 97.50 95.00 95.00 97.50 95.00 95.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection mosaic protein Tet(O/W/O) +tet(Q) tet_rib_protect tet(Q) NF012154.0 1425.00 1425.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection protein Tet(Q) +tet(S) tet(M-W-O-S) tet(S) - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection protein Tet(S) +tet(T) tet_rib_protect tet(T) - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection protein Tet(T) +tet(V) tet_MFS_efflux tet(V) NF012178.0 640.00 640.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(V) +tet(W) tet(M-W-O-S) tet(W) - 0.00 0.00 94.00 90.00 90.00 97.00 90.00 75.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection protein Tet(W) +tet(W/32/O) tet(M-W-O-S) tet(W/32/O) - 0.00 0.00 99.00 97.00 97.00 99.00 97.00 97.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection mosaic protein Tet(W/32/O) +tet(W/N/W) tet(M-W-O-S) tet(W/N/W) - 0.00 0.00 96.00 95.00 95.00 96.00 95.00 95.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection mosaic protein Tet(W/N/W) +tet(X) tet tet(X) NF033111.2 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline-inactivating monooxygenase Tet(X) +tet(X1) tet(X) tet(X1) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline-inactivating monooxygenase Tet(X1) +tet(X2) tet(X) tet(X2) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline-inactivating monooxygenase Tet(X2) +tet(X3) tet(X) tet(X3) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TIGECYCLINE tetracycline-inactivating monooxygenase Tet(X3) +tet(X4) tet(X) tet(X4) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TIGECYCLINE tetracycline-inactivating monooxygenase Tet(X4) +tet(X5) tet(X) tet(X5) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TIGECYCLINE tetracycline-inactivating monooxygenase Tet(X5) +tet(Y) tet_A_B_C_D tet(Y) NF012188.1 820.00 820.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(Y) +tet(Z) tet_A_B_C_D tet(Z) - 0.00 0.00 90.00 90.00 90.00 93.00 90.00 25.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter Tet(Z) +tetA(46) tet tetA(46) NF000474.1 1250.00 1250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux ABC transporter Tet(46) subunit A +tetA(58) tet tetA(58) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux ABC transporter Tet(58) subunit A +tetA(60) tet tetA(60) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux ABC transporter Tet(60) subunit A +tetA(D) tet_A_B_C_D tetA(D) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE Tet(D)-related tetracycline efflux MFS transporter +tetA(P) tet_MFS_efflux tetA(P) NF000043.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter TetA(P) +tetAB_A tetAB tetA NF000506.1 1025.00 1000.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux ABC transporter TetAB subunit A +tetAB_B tetAB tetAB_B NF000103.1 999.00 999.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux ABC transporter TetAB subunit B +tetAB tet tetAB - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux ABC transporter TetAB +tetB(46) tet tetB(46) NF000475.1 1250.00 1250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux ABC transporter Tet(46) subunit B +tetB(58) tet tetB(58) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux ABC transporter Tet(58) subunit B +tetB(60) tet tetB(60) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux ABC transporter Tet(60) subunit B +tetB(P) tet_rib_protect tetB(P) - 0.00 0.00 90.00 90.00 90.00 93.00 90.00 25.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection protein TetB(P) +tet_A_B_C_D tet_MFS_efflux tet NF012174.0 475.00 475.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE Tet(A)/Tet(B)/Tet(C) family tetracycline efflux MFS transporter +tet_L_K_45 tet_MFS_efflux tet NF012175.1 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE Tet(L)/Tet(K)/Tet(45) family tetracycline efflux MFS transporter +tet_MFS_efflux MFS_efflux tet - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline efflux MFS transporter +tet_destruct tet tet NF033476.1 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline destructase +tet_rib_protect tet tet NF012153.1 775.00 775.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance ribosomal protection protein +tet AMR tet - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TETRACYCLINE TETRACYCLINE tetracycline resistance protein +tir VIRULENCE_Ecoli tir NF033637.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 1 VIRULENCE VIRULENCE type III secretion system LEE translocated intimin receptor Tir +tlmB blmB_tlmB tlmB NF000485.1 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BLEOMYCIN BLEOMYCIN bleomycin family antibiotic N-acetyltransferase TlmB +tlr(C) abcf-produ tlr(C) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR MACROLIDE MACROLIDE ABC-F type ribosomal protection protein Tlr(C) +tmexC RND-peri tmexC - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR TETRACYCLINE TIGECYCLINE multidrug efflux RND transporter periplasmic adaptor subunit TMexC +tmexD RND-IM tmexD - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR TETRACYCLINE TIGECYCLINE multidrug efflux RND transporter permease subunit TMexD +toprJ RND-OM toprJ - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR TETRACYCLINE TIGECYCLINE multidrug efflux transporter outer membrane subunit TOprJ +toxB VIRULENCE_Ecoli toxB - 0.00 0.00 85.00 90.00 90.00 90.00 90.00 25.00 1 VIRULENCE VIRULENCE toxin B +tpeL VIRULENCE_Cperf tpeL - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE glycosylating toxin TpeL +tsh hbp_auto tsh - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE temperature-sensitive protease autotransporter hemagglutinin Tsh +tsnR nshR_tsnR tsnR - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR THIOSTREPTON THIOSTREPTON 23S rRNA (adenine(1067)-N)-methyltransferase TsnR +tst VIRULENCE_Saur tst - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE toxic shock syndrome toxin TSST-1 +ttgA RND-peri ttgA - 0.00 0.00 93.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX toluene efflux RND transporter periplasmic adaptor subunit TtgA +ttgB RND-IM ttgB - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter permease subunit TtgB +ttgD RND-peri ttgD - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX toluene efflux RND transporter periplasmic adaptor subunit TtgD +ttgE RND-IM ttgE - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR EFFLUX EFFLUX multidrug efflux RND transporter permease subunit TtgE +ttgR BIOCIDE ttgR - 0.00 0.00 92.00 90.00 90.00 96.00 90.00 25.00 1 STRESS BIOCIDE EFFLUX EFFLUX efflux transport transcriptional regulator TtgR +ttgT BIOCIDE ttgT - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 STRESS BIOCIDE EFFLUX EFFLUX efflux transport transcriptional regulator TtgT +tva(A) abc-f tva(A) - 0.00 0.00 88.00 90.00 90.00 93.00 90.00 25.00 2 AMR AMR PLEUROMUTILIN PLEUROMUTILIN/STREPTOGRAMIN ABC-F type ribosomal protection protein Tva(A) +tva(B) abc-f tva(B) - 0.00 0.00 92.00 90.00 90.00 94.00 90.00 25.00 2 AMR AMR PLEUROMUTILIN PLEUROMUTILIN/STREPTOGRAMIN ABC-F type ribosomal protection protein Tva(B) +vac_auto auto_tox vactox - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE vacuolating autotransporter toxin Vat +vanA-Ao2 vanA-all vanA-Ao2 NF000092.1 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--(R)-lactate ligase VanA-Ao2 +vanA-Pa vanA-all vanA-Pa - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--(R)-lactate ligase VanA-Pa +vanA-Pt2 vanA-all vanA-Pt2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--(R)-lactate ligase VanA-Pt2 +vanA-Pt vanA-all vanA-Pt - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--(R)-lactate ligase VanA-Pt +vanA-Sc vanA-all vanA-Sc NF000129.1 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--(R)-lactate ligase VanA-Sc +vanA-all AMR vanA NF000206.1 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--(R)-lactate ligase +vanA vanA-all vanA NF012217.1 775.00 775.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--(R)-lactate ligase VanA +vanB vanA-all vanB NF012216.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--(R)-lactate ligase VanB +vanC-all AMR vanC NF000207.3 520.00 520.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--D-serine ligase +vanC1 vanC vanC NF012213.0 775.00 775.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--D-serine ligase VanC1 +vanC2/3 vanC vanC - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--D-serine ligase VanC2/3 +vanC vanC-all vanC NF012214.1 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--D-serine ligase VanC +vanD vanA-all vanD NF012215.1 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--(R)-lactate ligase VanD +vanE vanC-all vanE NF000036.1 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--D-serine ligase VanE +vanF vanA-all vanF NF000144.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--(R)-lactate ligase VanF +vanG-Cd vanG vanG - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--D-serine ligase VanG-Cd +vanG2 vanG vanG - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--D-serine ligase VanG2 +vanG AMR vanG NF000091.3 495.00 495.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--D-serine ligase VanG +vanH-Ac1 vanH-Amyco vanH-Ac1 NF000151.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-lactate dehydrogenase VanH-Ac1 +vanH-Amyco vanH vanH NF000112.1 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanH-AOV family D-lactate dehydrogenase +vanH-Ao1 vanH-Amyco vanH-Ao1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-lactate dehydrogenase VanH-Ao1 +vanH-Ao2 vanH-Amyco vanH-Ao2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-lactate dehydrogenase VanH-Ao2 +vanH-A vanH_group_A_Pt vanH-A - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-lactate dehydrogenase VanH-A +vanH-B vanH vanH-B - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-lactate dehydrogenase VanH-B +vanH-D vanH vanH-D NF000004.1 550.00 550.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-lactate dehydrogenase VanH-D +vanH-F vanH vanH-F - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-lactate dehydrogenase VanH-F +vanH-M vanH vanH-M - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-lactate dehydrogenase VanH-M +vanH-O vanH vanH-O - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-lactate dehydrogenase VanH-O +vanH-Pt2 vanH_group_A_Pt vanH-Pt2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-lactate dehydrogenase VanH-Pt2 +vanH-Pt vanH_group_A_Pt vanH-Pt - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-lactate dehydrogenase VanH-Pt +vanH-Sc vanH vanH-Sc NF000128.1 650.00 650.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-lactate dehydrogenase VanH-Sc +vanH_group_A_Pt vanH vanH NF000371.1 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanH-A/VanH-Pt family D-lactate dehydrogenase +vanH AMR vanH NF000492.1 540.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-lactate dehydrogenase VanH +vanI vanA-all vanI NF000372.1 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--(R)-lactate ligase VanI +vanJ AMR vanJ NF000373.1 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN teicoplanin resistance protein VanJ +vanK-I vanK vanK-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN peptidoglycan bridge formation peptidyltransferase VanK-I +vanK-Sc vanK vanK-Sc - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN peptidoglycan bridge formation peptidyltransferase VanK-Sc +vanK AMR vanK - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanK family peptidoglycan bridge formation peptidyltransferase +vanL vanC-all vanL NF000032.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--D-serine ligase VanL +vanM vanA-all vanM NF000470.1 760.00 760.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--(R)-lactate ligase VanM +vanN vanC-all vanN NF000093.1 700.00 700.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--D-serine ligase VanN +vanO vanA-all vanO NF000374.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-alanine--(R)-lactate ligase VanO +vanR-ABDEGLN vanR_gen vanR NF033117.2 350.00 350.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanR-ABDEGLN family response regulator transcription factor +vanR-A vanR-ABDEGLN vanR-A NF000401.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanA-type vancomycin resistance DNA-binding response regulator VanR +vanR-B vanR_gen vanR-B NF000402.1 480.00 480.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanB-type vancomycin resistance response regulator transcription factor VanR +vanR-Cd vanR-ABDEGLN vanR-Cd - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanG-Cd-type vancomycin resistance DNA-binding response regulator VanR +vanR-C vanR-ABDEGLN vanR-C NF000403.1 480.00 480.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanC-type vancomycin resistance DNA-binding response regulator VanR +vanR-D vanR-ABDEGLN vanR-D NF000404.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanD-type vancomycin resistance DNA-binding response regulator VanR +vanR-E vanR-ABDEGLN vanR-E - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanE-type vancomycin resistance DNA-binding response regulator VanR +vanR-FM vanR_gen vanR NF033120.0 460.00 460.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanR-FM family response regulator transcription factor +vanR-F vanR-FM vanR-F - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanF-type vancomycin resistance DNA-binding response regulator VanR +vanR-G vanR-ABDEGLN vanR-G - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanG-type vancomycin resistance DNA-binding response regulator VanR +vanR-I vanR-ABDEGLN vanR-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanI-type vancomycin resistance DNA-binding response regulator VanR +vanR-L vanR-ABDEGLN vanR-L - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanL-type vancomycin resistance DNA-binding response regulator VanR +vanR-M vanR-FM vanR-M - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanM-type vancomycin resistance DNA-binding response regulator VanR +vanR-N vanR-ABDEGLN vanR-N - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanN-type vancomycin resistance DNA-binding response regulator VanR +vanR-O vanR_gen vanR-O NF033118.1 505.00 505.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanO-type vancomycin resistance response regulator transcription factor VanR +vanR-Sc vanR_gen vanR-Sc - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanSc-type vancomycin resistance response regulator transcription factor VanR +vanR_gen RESPONSE_REG vanR - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN vancomycin resistance response regulator transcription factor VanR +vanS-A vanS_ACDEFG vanS-A - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanA-type vancomycin resistance histidine kinase VanS +vanS-B vanS_gen vanS-B NF033090.1 920.00 920.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanB-type vancomycin resistance histidine kinase VanS +vanS-Cd vanS_ACDEFG vanS-Cd - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanG-Cd-type vancomycin resistance histidine kinase VanS +vanS-C vanS_ACDEFG vanS-C - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanC-type vancomycin resistance histidine kinase VanS +vanS-D vanS_ACDEFG vanS-D - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanD-type vancomycin resistance histidine kinase VanS +vanS-E vanS_ACDEFG vanS-E - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanE-type vancomycin resistance histidine kinase VanS +vanS-F vanS_ACDEFG vanS-F - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanF-type vancomycin resistance histidine kinase VanS +vanS-G vanS_ACDEFG vanS-G - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanG-type vancomycin resistance histidine kinase VanS +vanS-L vanS_ACDEFG vanS-L - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanL-type vancomycin resistance histidine kinase VanS +vanS-M vanS_ACDEFG vanS-M - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanM-type vancomycin resistance histidine kinase VanS +vanS-N vanS_ACDEFG vanS-N - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanN-type vancomycin resistance histidine kinase VanS +vanS-O vanS_gen vanS-O NF033094.0 720.00 720.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanO-type vancomycin resistance histidine kinase VanS +vanS-Pt2 vanS_ACDEFG vanS-Pt2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanPt2-type vancomycin resistance histidine kinase VanS +vanS-Pt vanS_ACDEFG vanS-Pt - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanPt-type vancomycin resistance histidine kinase VanS +vanS-Sc vanS_gen vanS-Sc - 0.00 0.00 90.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanSc-type vancomycin resistance histidine kinase VanS +vanS_ACDEFG vanS_gen vanS NF033091.0 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN vancomycin resistance histidine kinase VanS +vanS_gen AMR vanS - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN vancomycin resistance histidine kinase VanS +vanT-Cd vanT-G_fam vanT-Cd - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1 AMR AMR GLYCOPEPTIDE VANCOMYCIN membrane-bound serine racemase VanT-Cd +vanT-C vanT_CELN vanT-C - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN membrane-bound serine racemase VanT-C +vanT-E vanT_CELN vanT-E - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN membrane-bound serine racemase VanT-E +vanT-G_fam vanT_all vanT NF033131.1 460.00 460.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanT-G-like membrane-bound serine racemase +vanT-G vanT-G_fam vanT-G - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN membrane-bound serine racemase VanT-G +vanT-N vanT_CELN vanT-N - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN membrane-bound serine racemase VanT-N +vanT_CELN vanT_all vanT NF033132.1 900.00 900.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN membrane-bound serine racemase VanT +vanT_all AMR vanT - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN membrane-bound serine racemase VanT +vanTc2 vanT_CELN vanTc - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN membrane-bound serine racemase VanT +vanTc3 vanT_CELN vanTc - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN membrane-bound serine racemase VanT +vanTm-L vanT_all vanTm NF000033.1 675.00 675.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN serine racemase VanT-L membrane subunit +vanTr-L vanT_all vanTr NF033133.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN serine racemase VanT-L catalytic subunit +vanU-G vanU vanU-G - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN glycopeptide resistance transcriptional regulator VanU-G +vanU AMR vanU NF000090.1 150.00 150.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN glycopeptide resistance transcriptional regulator VanU +vanW-B vanW vanW-B NF033122.1 610.00 610.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN glycopeptide resistance accessory protein VanW-B +vanW-G vanW vanW-G NF033123.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN glycopeptide resistance accessory protein VanW-G +vanW-I vanW vanW-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN glycopeptide resistance accessory protein VanW-I +vanW-Pt vanW vanW-Pt - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN glycopeptide resistance accessory protein VanW-Pt +vanW AMR vanW NF033128.2 365.00 365.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN glycopeptide resistance accessory protein VanW +vanX-Ac1 vanX vanX-Ac1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase VanX-Ac1 +vanX-Ao1 vanX vanX-Ao1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase VanX-Ao1 +vanX-Ao2 vanX vanX-Ao2 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase VanX-Ao2 +vanX-A vanX vanX-A - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase VanX-A +vanX-B vanX vanX-B - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase VanX-B +vanX-D vanX vanX-D - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase VanX-D +vanX-F vanX vanX-F - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase VanX-F +vanX-I vanX vanX-I - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase VanX-I +vanX-M vanX vanX-M - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase VanX-M +vanX-O vanX vanX-O - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase VanX-O +vanX-Pt vanX vanX-Pt - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase VanX-Pt +vanX-Sc vanX vanX-Sc - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase VanX-Sc +vanXY-C vanXY vanXY-C - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase/D-Ala-D-Ala carboxypeptidase VanXY-C +vanXY-E vanXY vanXY-E - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase/D-Ala-D-Ala carboxypeptidase VanXY-E +vanXY-G2 vanXY-G_fam vanXY - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase/D-Ala-D-Ala carboxypeptidase VanXY-G2 +vanXY-G_fam vanXY vanXY NF000149.1 500.00 500.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase/D-Ala-D-Ala carboxypeptidase VanXY-G +vanXY-G vanXY-G_fam vanXY - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase/D-Ala-D-Ala carboxypeptidase VanXY-G +vanXY-L vanXY vanXY-L - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase/D-Ala-D-Ala carboxypeptidase VanXY-L +vanXY-N vanXY vanXY-N - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase/D-Ala-D-Ala carboxypeptidase VanXY-N +vanXY-c2/3 vanXY-C vanXY-C - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase/D-Ala-D-Ala carboxypeptidase VanXY-C +vanXY-c4 vanXY-C vanXY-C - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase/D-Ala-D-Ala carboxypeptidase VanXY-C +vanXY AMR vanXY NF000380.1 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D,D-carboxypeptidase/D,D-dipeptidase VanXY +vanX AMR vanX NF033115.1 320.00 320.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala dipeptidase VanX +vanY-A vanY_AFMPt vanY-A - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala carboxypeptidase VanY-A +vanY-B vanY_BG vanY-B - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala carboxypeptidase VanY-B +vanY-D AMR vanY-D NF000471.1 625.00 625.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN transpeptidase-like D-Ala-D-Ala carboxypeptidase VanY-D +vanY-F vanY_AFMPt vanY-F - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala carboxypeptidase VanY-F +vanY-G1 vanY_BG vanY-G1 - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala carboxypeptidase VanY-G1 +vanY-G vanY_BG vanY-G - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala carboxypeptidase VanY-G +vanY-N vanY vanY-N NF000086.1 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D,D-peptidase/D,D-carboxypeptidase VanY-N +vanY-Pt vanY_AFMPt vanY-Pt - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala carboxypeptidase VanY-Pt +vanY_AFMPt vanY vanY NF000472.1 425.00 425.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanY-A/VanY-F/VanY-M family D-Ala-D-Ala carboxypeptidase +vanY_BG vanY vanY NF000473.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN VanY-B/VanY-G family D-Ala-D-Ala carboxypeptidase +vanY AMR vanY - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN D-Ala-D-Ala carboxypeptidase VanY +vanZ-A vanZ vanZ-A NF033125.2 250.00 250.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN glycopeptide resistance protein VanZ-A +vanZ-F vanZ vanZ-F NF000145.1 375.00 375.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN glycopeptide resistance protein VanZ-F +vanZ-Pt vanZ vanZ-Pt NF000142.1 260.00 260.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN glycopeptide resistance protein VanZ-Pt +vanZ1 vanZ vanZ1 - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 AMR AMR GLYCOPEPTIDE VANCOMYCIN glycopeptide resistance protein VanZ1 +vanZ AMR vanZ - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR GLYCOPEPTIDE VANCOMYCIN glycopeptide resistance protein VanZ +varG bla-B varG NF033574.1 750.00 750.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BETA-LACTAM CARBAPENEM VarG family subclass B1-like metallo-beta-lactamase +vat(A) vat vat(A) NF000101.1 450.00 450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOGRAMIN STREPTOGRAMIN streptogramin A O-acetyltransferase Vat(A) +vat(B) vat vat(B) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOGRAMIN STREPTOGRAMIN streptogramin A O-acetyltransferase Vat(B) +vat(C) vat vat(C) NF000097.1 425.00 425.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOGRAMIN STREPTOGRAMIN streptogramin A O-acetyltransferase Vat(C) +vat(D) vat vat(D) NF000111.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOGRAMIN STREPTOGRAMIN streptogramin A O-acetyltransferase Vat(D) +vat(E) vat vat(E) NF000020.1 450.00 450.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOGRAMIN STREPTOGRAMIN streptogramin A O-acetyltransferase Vat(E) +vat(F) vat vat(F) NF000147.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOGRAMIN STREPTOGRAMIN streptogramin A O-acetyltransferase Vat(F) +vat(H) vat vat(H) NF000504.1 475.00 425.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOGRAMIN STREPTOGRAMIN streptogramin A O-acetyltransferase Vat(H) +vat(I) vat vatI NF033468.1 415.00 415.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOGRAMIN STREPTOGRAMIN streptogramin A O-acetyltransferase Vat(I) +vat AMR vat NF000311.1 300.00 300.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOGRAMIN STREPTOGRAMIN Vat family streptogramin A O-acetyltransferase +vga(A) vga vga(A) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE ABC-F type ribosomal protection protein Vga(A) +vga(B) vga vga(B) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE ABC-F type ribosomal protection protein Vga(B) +vga(C) vga vga(C) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE ABC-F type ribosomal protection protein Vga(C) +vga(D) vga vga(D) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE ABC-F type ribosomal protection protein Vga(D) +vga(E) vga vga(E) - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE ABC-F type ribosomal protection protein Vga(E) +vga abc-f vga NF000170.1 800.00 800.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR LINCOSAMIDE LINCOSAMIDE Vga family ABC-F type ribosomal protection protein +vgb(A) vgb vgb(A) NF000022.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOGRAMIN STREPTOGRAMIN streptogramin B lyase Vgb(A) +vgb(B) vgb vgb(B) NF000096.1 600.00 600.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOGRAMIN STREPTOGRAMIN streptogramin B lyase Vgb(B) +vgb(C) vgb vgbC - 0.00 0.00 84.00 90.00 90.00 88.00 90.00 25.00 2 AMR AMR STREPTOGRAMIN STREPTOGRAMIN streptogramin B lyase Vgb(C) +vgb AMR vgb - 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR STREPTOGRAMIN STREPTOGRAMIN streptogramin B lyase +virF VIRULENCE_Ecoli virF - 0.00 0.00 94.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE AraC family invasion system transcriptional regulator VirF +vmlR abc-f vmlR - 0.00 0.00 90.00 90.00 90.00 96.00 90.00 25.00 2 AMR AMR MACROLIDE/PLEUROMUTILIN LINCOSAMIDE/STREPTOGRAMIN/TIAMULIN ABC-F type ribosomal protection protein VmlR +vph AMR vph NF000088.1 400.00 400.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR TUBERACTINOMYCIN VIOMYCIN viomycin phosphotransferase +ybtP VIRULENCE ybtP - 0.00 0.00 85.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE yersiniabactin ABC transporter ATP-binding/permease protein YbtP +ybtQ VIRULENCE ybtQ - 0.00 0.00 85.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE yersiniabactin ABC transporter ATP-binding/permease protein YbtQ +yfeA VIRULENCE yfeA - 0.00 0.00 83.00 90.00 90.00 88.00 90.00 25.00 1 VIRULENCE VIRULENCE iron/manganese ABC transporter substrate-binding protein YfeA +yfeB VIRULENCE yfeB - 0.00 0.00 86.00 90.00 90.00 96.00 90.00 25.00 1 VIRULENCE VIRULENCE iron/manganese ABC transporter ATP-binding protein YfeB +yfeD VIRULENCE yfeD - 0.00 0.00 88.00 90.00 90.00 92.00 90.00 25.00 1 VIRULENCE VIRULENCE iron/manganese ABC transporter permease subunit YfeD +zbmA ble zbmA NF000479.1 280.00 280.00 0.00 0.00 0.00 0.00 0.00 0.00 2 AMR AMR BLEOMYCIN ZORBAMYCIN zorbamycin binding protein ZbmA diff --git a/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/taxgroup.tab b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/taxgroup.tab new file mode 100644 index 0000000..44f8337 --- /dev/null +++ b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/taxgroup.tab @@ -0,0 +1,2 @@ +#taxgroup gpipe_taxgroup number_of_nucl_ref_genes +Acinetobacter_baumannii Acinetobacter 0 diff --git a/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/version.txt b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/version.txt new file mode 100644 index 0000000..86fc06f --- /dev/null +++ b/tests/integration_test/data/bakta_db/amrfinderplus-db/2021-09-30.1/version.txt @@ -0,0 +1 @@ +2021-09-30.1 diff --git a/tests/integration_test/data/bakta_db/amrfinderplus-db/latest b/tests/integration_test/data/bakta_db/amrfinderplus-db/latest new file mode 120000 index 0000000..ae1451e --- /dev/null +++ b/tests/integration_test/data/bakta_db/amrfinderplus-db/latest @@ -0,0 +1 @@ +2021-09-30.1 \ No newline at end of file diff --git a/tests/integration_test/data/bakta_db/antifam.h3f b/tests/integration_test/data/bakta_db/antifam.h3f new file mode 100644 index 0000000..23083fc Binary files /dev/null and b/tests/integration_test/data/bakta_db/antifam.h3f differ diff --git a/tests/integration_test/data/bakta_db/antifam.h3i b/tests/integration_test/data/bakta_db/antifam.h3i new file mode 100644 index 0000000..843585b Binary files /dev/null and b/tests/integration_test/data/bakta_db/antifam.h3i differ diff --git a/tests/integration_test/data/bakta_db/antifam.h3m b/tests/integration_test/data/bakta_db/antifam.h3m new file mode 100644 index 0000000..ee622e4 Binary files /dev/null and b/tests/integration_test/data/bakta_db/antifam.h3m differ diff --git a/tests/integration_test/data/bakta_db/antifam.h3p b/tests/integration_test/data/bakta_db/antifam.h3p new file mode 100644 index 0000000..ac0477d Binary files /dev/null and b/tests/integration_test/data/bakta_db/antifam.h3p differ diff --git a/tests/integration_test/data/bakta_db/bakta.db b/tests/integration_test/data/bakta_db/bakta.db new file mode 100644 index 0000000..b000d8f Binary files /dev/null and b/tests/integration_test/data/bakta_db/bakta.db differ diff --git a/tests/integration_test/data/bakta_db/expert-protein-sequences.dmnd b/tests/integration_test/data/bakta_db/expert-protein-sequences.dmnd new file mode 100644 index 0000000..fb89bcd Binary files /dev/null and b/tests/integration_test/data/bakta_db/expert-protein-sequences.dmnd differ diff --git a/tests/integration_test/data/bakta_db/ncRNA-genes.i1f b/tests/integration_test/data/bakta_db/ncRNA-genes.i1f new file mode 100644 index 0000000..ae6c111 Binary files /dev/null and b/tests/integration_test/data/bakta_db/ncRNA-genes.i1f differ diff --git a/tests/integration_test/data/bakta_db/ncRNA-genes.i1i b/tests/integration_test/data/bakta_db/ncRNA-genes.i1i new file mode 100644 index 0000000..5cb984b Binary files /dev/null and b/tests/integration_test/data/bakta_db/ncRNA-genes.i1i differ diff --git a/tests/integration_test/data/bakta_db/ncRNA-genes.i1m b/tests/integration_test/data/bakta_db/ncRNA-genes.i1m new file mode 100644 index 0000000..acefa62 Binary files /dev/null and b/tests/integration_test/data/bakta_db/ncRNA-genes.i1m differ diff --git a/tests/integration_test/data/bakta_db/ncRNA-genes.i1p b/tests/integration_test/data/bakta_db/ncRNA-genes.i1p new file mode 100644 index 0000000..2c11612 Binary files /dev/null and b/tests/integration_test/data/bakta_db/ncRNA-genes.i1p differ diff --git a/tests/integration_test/data/bakta_db/ncRNA-regions.i1f b/tests/integration_test/data/bakta_db/ncRNA-regions.i1f new file mode 100644 index 0000000..991a6f2 Binary files /dev/null and b/tests/integration_test/data/bakta_db/ncRNA-regions.i1f differ diff --git a/tests/integration_test/data/bakta_db/ncRNA-regions.i1i b/tests/integration_test/data/bakta_db/ncRNA-regions.i1i new file mode 100644 index 0000000..577d124 Binary files /dev/null and b/tests/integration_test/data/bakta_db/ncRNA-regions.i1i differ diff --git a/tests/integration_test/data/bakta_db/ncRNA-regions.i1m b/tests/integration_test/data/bakta_db/ncRNA-regions.i1m new file mode 100644 index 0000000..d57997a Binary files /dev/null and b/tests/integration_test/data/bakta_db/ncRNA-regions.i1m differ diff --git a/tests/integration_test/data/bakta_db/ncRNA-regions.i1p b/tests/integration_test/data/bakta_db/ncRNA-regions.i1p new file mode 100644 index 0000000..1b6852c Binary files /dev/null and b/tests/integration_test/data/bakta_db/ncRNA-regions.i1p differ diff --git a/tests/integration_test/data/bakta_db/oric.fna b/tests/integration_test/data/bakta_db/oric.fna new file mode 100644 index 0000000..b032dbf --- /dev/null +++ b/tests/integration_test/data/bakta_db/oric.fna @@ -0,0 +1,4 @@ +>ORI10010001 +TATTCTTCTATAACATTGTCAAGAATGATAGTTAAAATTCTCGAAATTGGGATATTAACTGCTTTGGAGTAATTTCTAACTTTTTGTCATACTCTTTGACTTGTATAGAAGTGTACACCTGTATCTAGTTTTTCTTGGCGTTCAACAGGAACTATTCCTGGTATTTTTGTTTTAGGTTGGGGAGGAATAGGCTGTGGTTGTGTGAATTGTTGTTGAAAATTTTGATTTTTTTGCTGTAAGAAACCATTATTATGATATTGAAAATTTTGTTCCTCTTGAAAATATCTCTCTTTTTTTGGTTTTCCAGAAAAATTTGATGAAAAAGATTTTTCTTCATTTCAATTTTCAAGATTATTTTCATTTTGTTGATTTATTTGCTCAGGCTGTTGAAATGAATTATTTTTTGATCAAAAAGATTTTGGAAAGGTTTTTTCAAAAGCAGATAAAGGTCCAAAATCAAATGAAGATGAATCTTTGTCAAAAGATGTTTCTTCTCTTTTTGACAAATTTTGTTTTTGATTAAACTTATTTTTATTTTGGGGTGTTACTTTTTCTTTTATGGAAAACAAATCTTCTTCTAAAAGACTTTGTTCTGGGTCATCATCTTGTGCTAAATCAAAGAAAAAACGTTTCTTTTTGTTA +>ORI10010003 +GGCGTAGACACTGAATTCGATGGGGATAAGTGGTGGATAAAAGAATATAAATTAGTCATTACACTTTACTCACGAATATCCCCCTTTTTTTAGAGAAAAAATATACTTTCTTCACAAGCTTGTGTGCGGTTTTTGTTTGGTAATTCTCGAGACATAAGCACTTATCCAGATATTCACAGTTACTATTATGTGATACGACTACATTCTTTATACTTATAAGATTAATAAGGAGGAAACTAACT diff --git a/tests/integration_test/data/bakta_db/orit.fna b/tests/integration_test/data/bakta_db/orit.fna new file mode 100644 index 0000000..fc6e1c9 --- /dev/null +++ b/tests/integration_test/data/bakta_db/orit.fna @@ -0,0 +1,4 @@ +>CP019995|MOBP +GTAGAATCGTTTAGTATGAGAATAGAAAACCAACGGTTTTCATGAACTTACTAAACGATTCTAC +>CP012386|MOBP +AGAACAATCAACAACTAATTAGGCAAATTAAGGGGTGCTAAACAACTGCTAGTAGGTGCTAGAGATGTGCTATAAAGGGTGCTAGTTTGGTGCTAGTTACTGCTAAATACGTGCTAGTTTAGGTGCTAGAAACGTGCTATATGGTGCTAAAAAGGTGCTAGTTTGCATGAAGTTACCTGCTAGCCAAGTGCTAGTGGCGTTCGTTTTTGGGTCCCACGGGAAAGCCTTGCACTGCAAGGCGGGTCAGCTTGTCTGACCCCCATTTCCCCTTATGCTCTTCCGAAACACAAAGCGCAATTAAGCGAATACTAGAGAATAAATA diff --git a/tests/integration_test/data/bakta_db/pfam.h3f b/tests/integration_test/data/bakta_db/pfam.h3f new file mode 100644 index 0000000..74e4491 Binary files /dev/null and b/tests/integration_test/data/bakta_db/pfam.h3f differ diff --git a/tests/integration_test/data/bakta_db/pfam.h3i b/tests/integration_test/data/bakta_db/pfam.h3i new file mode 100644 index 0000000..053a719 Binary files /dev/null and b/tests/integration_test/data/bakta_db/pfam.h3i differ diff --git a/tests/integration_test/data/bakta_db/pfam.h3m b/tests/integration_test/data/bakta_db/pfam.h3m new file mode 100644 index 0000000..2abac51 Binary files /dev/null and b/tests/integration_test/data/bakta_db/pfam.h3m differ diff --git a/tests/integration_test/data/bakta_db/pfam.h3p b/tests/integration_test/data/bakta_db/pfam.h3p new file mode 100644 index 0000000..f15ed73 Binary files /dev/null and b/tests/integration_test/data/bakta_db/pfam.h3p differ diff --git a/tests/integration_test/data/bakta_db/psc.dmnd b/tests/integration_test/data/bakta_db/psc.dmnd new file mode 100644 index 0000000..3133a99 Binary files /dev/null and b/tests/integration_test/data/bakta_db/psc.dmnd differ diff --git a/tests/integration_test/data/bakta_db/rRNA.i1f b/tests/integration_test/data/bakta_db/rRNA.i1f new file mode 100644 index 0000000..8214ce7 Binary files /dev/null and b/tests/integration_test/data/bakta_db/rRNA.i1f differ diff --git a/tests/integration_test/data/bakta_db/rRNA.i1i b/tests/integration_test/data/bakta_db/rRNA.i1i new file mode 100644 index 0000000..ad638d2 Binary files /dev/null and b/tests/integration_test/data/bakta_db/rRNA.i1i differ diff --git a/tests/integration_test/data/bakta_db/rRNA.i1m b/tests/integration_test/data/bakta_db/rRNA.i1m new file mode 100644 index 0000000..789d865 Binary files /dev/null and b/tests/integration_test/data/bakta_db/rRNA.i1m differ diff --git a/tests/integration_test/data/bakta_db/rRNA.i1p b/tests/integration_test/data/bakta_db/rRNA.i1p new file mode 100644 index 0000000..8d4c287 Binary files /dev/null and b/tests/integration_test/data/bakta_db/rRNA.i1p differ diff --git a/tests/integration_test/data/bakta_db/rfam-go.tsv b/tests/integration_test/data/bakta_db/rfam-go.tsv new file mode 100644 index 0000000..4940f55 --- /dev/null +++ b/tests/integration_test/data/bakta_db/rfam-go.tsv @@ -0,0 +1 @@ +Rfam:RF00001 GO:0003735 diff --git a/tests/integration_test/data/bakta_db/sorf.dmnd b/tests/integration_test/data/bakta_db/sorf.dmnd new file mode 100644 index 0000000..0bdc542 Binary files /dev/null and b/tests/integration_test/data/bakta_db/sorf.dmnd differ diff --git a/tests/integration_test/data/bakta_db/version.json b/tests/integration_test/data/bakta_db/version.json new file mode 100644 index 0000000..b64a2ce --- /dev/null +++ b/tests/integration_test/data/bakta_db/version.json @@ -0,0 +1,54 @@ +{ + "date": "2023-02-20", + "major": 5, + "minor": 0, + "type": "full", + "dependencies": [ + { + "name": "AMRFinderPlus", + "release": "2020-09-22.2" + }, + { + "name": "COG", + "release": "2014" + }, + { + "name": "DoriC", + "release": "10" + }, + { + "name": "ISFinder", + "release": "2019-09-25" + }, + { + "name": "Mob-suite", + "release": "2.0" + }, + { + "name": "Pfam", + "release": "33.1" + }, + { + "name": "RefSeq", + "release": "r202" + }, + { + "name": "Rfam", + "release": "14.2" + }, + { + "name": "UniProtKB/Swiss-Prot", + "release": "2020_04" + } + ], + "experts": [ + { + "name": "AMRFinderPlus", + "release": "3.10.1" + }, + { + "name": "NCBI BlastRules", + "release": "4.0" + } + ] +} diff --git a/tests/integration_test/test_integration_test.py b/tests/integration_test/test_integration_test.py index c6b2d0c..99a8ab7 100644 --- a/tests/integration_test/test_integration_test.py +++ b/tests/integration_test/test_integration_test.py @@ -15,12 +15,12 @@ def assert_files_are_identical(self, path_to_first_file, path_to_second_file): second_file_content = self.read_file(path_to_second_file) self.assertEqual(first_file_content, second_file_content) - def test_pling_end_to_end(self): + def test_pling_align_end_to_end(self): args = Namespace(genomes_list='tests/integration_test/data/incy_list_4.txt', - output_dir='tests/integration_test/data/out', + output_dir='tests/integration_test/data/out_align', integerisation='align', bakta_db=None, - jaccard=0.4, + jaccard_distance=0.6, dcj=4, dedup=None, dedup_threshold=None, @@ -38,5 +38,63 @@ def test_pling_end_to_end(self): profile=None) run_pling.pling(args) - assert_files_are_identical("tests/integration_test/data/out/all_plasmids_matrix.dist", - "tests/integration_test/data/all_plasmids_matrix.truth.dist") + assert_files_are_identical("tests/integration_test/data/out_align/all_plasmids_matrix.dist", + "tests/integration_test/data/all_plasmids_matrix.align.truth.dist") + assert_files_are_identical("tests/integration_test/data/out_align/all_plasmids_distances.tsv", + "tests/integration_test/data/all_plasmids_distances.align.truth.tsv") + + def test_pling_anno_with_dedup_end_to_end(self): + args = Namespace(genomes_list='tests/integration_test/data/incy_list_4.txt', + output_dir='tests/integration_test/data/out_anno_with_dedup', + integerisation='anno', + bakta_db="tests/integration_test/data/bakta_db", + jaccard_distance=0.6, + dcj=4, + dedup=True, + dedup_threshold=98.5, + identity=80, + min_indel_size=200, + bh_connectivity=10, + bh_neighbours_edge_density=0.2, + small_subcommunity_size_threshold=4, + cores='2', + storetmp=False, + forceall=True, + ilp_solver='GLPK', + timelimit=None, + resources=None, + profile=None) + run_pling.pling(args) + + assert_files_are_identical("tests/integration_test/data/out_anno_with_dedup/all_plasmids_matrix.dist", + "tests/integration_test/data/all_plasmids_matrix.anno.truth.dist") + assert_files_are_identical("tests/integration_test/data/out_anno_with_dedup/all_plasmids_distances.tsv", + "tests/integration_test/data/all_plasmids_distances.anno.truth.tsv") + + def test_pling_anno_without_dedup_end_to_end(self): + args = Namespace(genomes_list='tests/integration_test/data/incy_list_4.txt', + output_dir='tests/integration_test/data/out_anno_without_dedup', + integerisation='anno', + bakta_db="tests/integration_test/data/bakta_db", + jaccard_distance=0.6, + dcj=4, + dedup=None, + dedup_threshold=None, + identity=80, + min_indel_size=200, + bh_connectivity=10, + bh_neighbours_edge_density=0.2, + small_subcommunity_size_threshold=4, + cores='2', + storetmp=False, + forceall=True, + ilp_solver='GLPK', + timelimit=None, + resources=None, + profile=None) + run_pling.pling(args) + + assert_files_are_identical("tests/integration_test/data/out_anno_without_dedup/all_plasmids_matrix.dist", + "tests/integration_test/data/all_plasmids_matrix.anno.truth.dist") + assert_files_are_identical("tests/integration_test/data/out_anno_without_dedup/all_plasmids_distances.tsv", + "tests/integration_test/data/all_plasmids_distances.anno.truth.tsv")