build.yml

name: Build

on: [workflow_dispatch]

jobs:
  build:
    name: "Build"
    runs-on: ubuntu-latest

    steps:
      - uses: "actions/checkout@v4"
        with:
          fetch-depth: 0
          submodules: "recursive"

      # Setup env
      - uses: "actions/setup-python@v5"
        with:
            python-version: "3.12"
      
      - name: Installs for Python 3.12
        run: |
          python --version
          pip install --upgrade pip wheel setuptools pybind11
      
      - name: Setup Lib Dependencies
        run: |
          apt-get install -y libeigen3-dev libboost-all-dev
      
      - name: Setup Cpp
        uses: aminya/setup-cpp@v1
        with:
          cmake: true

      - name: Setup IQTree
        run: |
          cd iqtree2
          git apply ../fpic-iqtree.patch
          mkdir build && cd build
          cmake -DIQTREE_FLAGS="single" -DBUILD_LIB=ON ..
          
      - name: Build IQTree 
        run: |
          make -j
          cd ../..
          mv iqtree2/build/libiqtree2.a pyiqtree/libiqtree/

      - name: Build PyIQTree
        run: python setup.py build
      
      - name: Install PyIQTree
        run: python setup.py install

      - name: Test 
        run: |
          pytest tests/test_RF_distance.py
          pytest tests/test_generate_random_tree_file.py