Invalid Literal for GATK data #3729
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iris-garden
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The following post was exported from discuss.hail.is, a forum for asking questions about Hail which has since been deprecated.
(Nov 28, 2023 at 10:58) Raghvendra_Agrawal said:
I got an error for GATK processed GWAS data. where the field “AS_UNIQ_ALT_READ_COUNT” in INFO column had data like “0|0” and the error was invalid “|” integral literal.
how to fix this?
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