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jrc_mus-granule-neurons-2 #20

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jonesa3 opened this issue Jun 21, 2024 · 8 comments
Open

jrc_mus-granule-neurons-2 #20

jonesa3 opened this issue Jun 21, 2024 · 8 comments
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jonesa3 commented Jun 21, 2024

No description provided.

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jonesa3 commented Jun 25, 2024

used s2 (128nm seemed too low for this dataset)

@jonesa3 jonesa3 assigned aemmav and unassigned jonesa3 Jun 25, 2024
@aemmav aemmav assigned jonesa3 and unassigned aemmav Jun 26, 2024
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jonesa3 commented Jul 10, 2024

proofread tif found here: /avetissiane/tiff_slices/jrc_mus-granule-neurons-2/s2_cp_masks_amira_proofread.tif

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jonesa3 commented Jul 16, 2024

connected components proofread tif found here: /avetissiane/tiff_slices/jrc_mus-granule-neurons-2/s2_cp_masks_amira_proofread_cc.tif

@jonesa3 jonesa3 assigned yuriyzubov and unassigned jonesa3 Jul 16, 2024
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/avetissiane/tiff_slices/jrc_mus-granule-neurons-2/s2_cp_masks_amira_proofread_cc.zarr

@yuriyzubov yuriyzubov assigned rinva and unassigned yuriyzubov Jul 18, 2024
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jrc_mus-granule-neurons-2.zarr/recon-2/labels/inference/segmentations/nuc

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rinva commented Jul 29, 2024 •
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nrs/data/jrc_mus-granule-neurons-2/thumbnail_nuc.jpg

@avweigel avweigel added the 👾 model trained model successfully trained label Aug 5, 2024
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rinva commented Aug 27, 2024

DOIs created
model - https://doi.org/10.25378/janelia.26506327 https://figshare.com/s/797ae268c99e05d20f82
refined segmentations - https://doi.org/10.25378/janelia.26506513 https://figshare.com/s/cc70f4a52d84e8da4159

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rinva commented Sep 4, 2024

Ready for meshes.

@rinva rinva assigned davidackerman and unassigned rinva Sep 4, 2024
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@yuriyzubov @davidackerman @avweigel @rinva @jonesa3 @aemmav