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jrc_mus-kidney-2 #24

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jonesa3 opened this issue Jun 21, 2024 · 7 comments
Open

jrc_mus-kidney-2 #24

jonesa3 opened this issue Jun 21, 2024 · 7 comments
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@davidackerman
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👾 model trained model successfully trained

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@jonesa3
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jonesa3 commented Jun 21, 2024

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@avweigel
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@davidackerman path of tif that needs relabeling is under 3D Prediction Path - v0 (raw)

Is this something that @jonesa3 could learn to do?

@davidackerman
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yeah for sure she can learn to do it! can you point me to the full path?

@aemmav aemmav assigned jonesa3 and unassigned davidackerman Jun 26, 2024
@jonesa3
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jonesa3 commented Jun 27, 2024

proofread tif found here: /avetissiane/tiff_slices/jrc_mus-kidney-2/s4_cp_masks_amira_proofread.tif

@jonesa3 jonesa3 assigned davidackerman and unassigned jonesa3 Jun 27, 2024
@avweigel avweigel assigned avweigel and unassigned davidackerman and avweigel Jun 27, 2024
@yuriyzubov
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/avetissiane/tiff_slices/jrc_mus-kidney-2/s4_cp_masks_amira_proofread_relabel.zarr

@yuriyzubov yuriyzubov assigned rinva and unassigned yuriyzubov Jul 8, 2024
@avweigel avweigel assigned yuriyzubov and rinva and unassigned rinva and yuriyzubov Jul 30, 2024
@rinva
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rinva commented Jul 30, 2024 •
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/cellmap/nrs/data/jrc_mus-kidney-2/thumbnail_nuc.jpg

@rinva rinva assigned yuriyzubov and unassigned rinva Jul 30, 2024
@avweigel avweigel added the 👾 model trained model successfully trained label Aug 5, 2024
@yuriyzubov yuriyzubov assigned rinva and unassigned yuriyzubov Aug 9, 2024
@rinva
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rinva commented Aug 27, 2024

DOIs created
model - https://doi.org/10.25378/janelia.26506354 https://figshare.com/s/aa9bf7b4f9d7bfe9d04f
refined segmentations - https://doi.org/10.25378/janelia.26506534 https://figshare.com/s/e5f428be9f0a11c4c892

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rinva commented Sep 4, 2024

Ready for meshes.

@rinva rinva assigned davidackerman and unassigned rinva Sep 4, 2024
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@yuriyzubov @davidackerman @avweigel @rinva @jonesa3 @aemmav