diff --git a/api/configs.html b/api/configs.html index 33de4ab3..ff0c2f46 100644 --- a/api/configs.html +++ b/api/configs.html @@ -290,7 +290,7 @@

ArchitectureConfigs
-class dacapo.experiments.architectures.CNNectomeUNetConfig(name, input_shape, fmaps_out, fmaps_in, num_fmaps, fmap_inc_factor, downsample_factors, kernel_size_down=None, kernel_size_up=None, eval_shape_increase=None, upsample_factors=None, constant_upsample=True, padding='valid', use_attention=False)
+class dacapo.experiments.architectures.CNNectomeUNetConfig(name, input_shape, fmaps_out, fmaps_in, num_fmaps, fmap_inc_factor, downsample_factors, kernel_size_down=None, kernel_size_up=None, eval_shape_increase=None, upsample_factors=None, constant_upsample=True, padding='valid')

This class configures the CNNectomeUNet based on https://github.com/saalfeldlab/CNNectome/blob/master/CNNectome/networks/unet_class.py

Includes support for super resolution via the upsampling factors.

@@ -321,7 +321,7 @@

TaskConfigs
-class dacapo.experiments.tasks.AffinitiesTaskConfig(name, neighborhood, lsds=False, lsds_to_affs_weight_ratio=1, affs_weight_clipmin=0.05, affs_weight_clipmax=0.95, lsd_weight_clipmin=0.05, lsd_weight_clipmax=0.95)
+class dacapo.experiments.tasks.AffinitiesTaskConfig(name, neighborhood, lsds=False, lsds_to_affs_weight_ratio=1)

This is a Affinities task config used for generating and evaluating voxel affinities for instance segmentations.

@@ -332,7 +332,7 @@

TaskConfigs

-class dacapo.experiments.tasks.DistanceTaskConfig(name, channels, clip_distance, tol_distance, scale_factor=1, mask_distances=False, clipmin=0.05, clipmax=0.95)
+class dacapo.experiments.tasks.DistanceTaskConfig(name, channels, clip_distance, tol_distance, scale_factor=1, mask_distances=False)

This is a Distance task config used for generating and evaluating signed distance transforms as a way of generating segmentations.

@@ -353,7 +353,7 @@

TrainerConfigs
-class dacapo.experiments.trainers.GunpowderTrainerConfig(name, batch_size, learning_rate, num_data_fetchers=5, augments=_Nothing.NOTHING, snapshot_interval=None, min_masked=0.15, clip_raw=True)
+class dacapo.experiments.trainers.GunpowderTrainerConfig(name, batch_size, learning_rate, num_data_fetchers=5, augments=_Nothing.NOTHING, snapshot_interval=None, min_masked=0.15, clip_raw=True, add_predictor_nodes_to_dataset=True)
trainer_type
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