diff --git a/src/xia2/Modules/SSX/batch_scale.py b/src/xia2/Modules/SSX/batch_scale.py index ad63e2e18..fb2bd0679 100644 --- a/src/xia2/Modules/SSX/batch_scale.py +++ b/src/xia2/Modules/SSX/batch_scale.py @@ -43,6 +43,11 @@ def __init__( params.model = "KB" params.scaling_options.full_matrix = False params.weighting.error_model.error_model = None + params.scaling_options.outlier_rejection = "simple" + params.reflection_selection.min_partiality = 0.25 + params.reflection_selection.method = "intensity_ranges" + params.reflection_selection.Isigma_range = [2, 0] + params.cut_data.partiality_cutoff = 0.25 self.params = params self.input_sg = space_group self.reference = reference diff --git a/src/xia2/Modules/SSX/data_reduction_programs.py b/src/xia2/Modules/SSX/data_reduction_programs.py index 0249989d6..3c011524f 100644 --- a/src/xia2/Modules/SSX/data_reduction_programs.py +++ b/src/xia2/Modules/SSX/data_reduction_programs.py @@ -883,14 +883,7 @@ def scale_reindex( assert reference # we should not be calling this path without a reference space_group = reduction_params.space_group.group() - expts = [] - refls = [] - logfile = "dials.scale_reindex.log" - for batch in batches_for_reindex: - for filepair in batch.filepairs: - expts.append(load.experiment_list(filepair.expt, check_format=False)) - refls.append(flex.reflection_table.from_file(filepair.refl)) batches_to_scale = [fp for batch in batches_for_reindex for fp in batch.filepairs] with run_in_directory(working_directory), record_step("scale_reindex"), log_to_file( logfile