README

JAGS Bernoulli module
===================
Provides Bernoulli distribution functions for JAGS.

License
-------
http://www.r-project.org/Licenses/GPL-2

General install notes
---------------------

Install dependencies (on a clean ubuntu installation)
```
sudo apt-get install autoconf automake libtool g++
```

Creating all auxiliary files
```
autoreconf -fvi
```

Building
```
./configure
make
```

or, if JAGS has been installed in a different location, e.g. /usr
```
./configure --prefix /usr
make
```

Install
```
sudo make install
```

Windows Compiling and Installation
----------------------------------

## Linux

For building the module in Windows it is easiest to use a tarball that was created in linux like this (starting from a source clone):

```
autoreconf -fvi
./configure
make dist-gzip
```

Copy the *.tar.gz file to your msys home directory and continue from there.

## Windows

- Install MinGW (MinGW installer including msys):
  http://www.mingw.org
  In MinGW get installer: msys-base is all you need.

- Install TDM-GCC Compiler Suite:
  http://tdm-gcc.tdragon.net 
  Use the exact same version of tdm-gcc as has been used to compile your
  JAGS Version on your system. In that case, also don't forget to untick
  the  "Check for updated files on the TDM-GCC server" 
  during the installation proccess of tdm-gcc. 
  For Jags-3.3.0 and Jags-3.4.0 use: 
  tdm64-gcc-4.6.1.exe

- Delete all *.dll.a files int the TDM-GCC Installation, so the
  compiler will link to the static libraries.

- Change path in c:/mingw/msys/1.0/etc/fstab from
  this:     c:/mingw /mingw
  to:       c:/MinGW64 /mingw
  to use TDM-GCC compilers

--> Start msys, extract tarball in your home dir, 
    cd into dir and do the following:
 + Note: the module needs the JAGS include files and
  the JAGS libraries.
  Therefore use the -L and -I options, as shown below.
 - For building 32bit binaries
```
  CXX="g++ -m32" \
  ./configure LDFLAGS="-L/c/Progra~1/JAGS/JAGS-3.4.0/i386/bin" CXXFLAGS="-I/c/Progra~1/JAGS/JAGS-3.4.0/include"

  make win32
```

- For building 64bit binaries
```
CXX="g++ -m64" \
./configure LDFLAGS="-L/c/Progra~1/JAGS/JAGS-3.4.0/x64/bin" CXXFLAGS="-I/c/Progra~1/JAGS/JAGS-3.4.0/include"

make win64
```

- Copy the win/win32/bernoulli.* or win/win64/bernoulli.* 
  files to your JAGS modules directory to enable the module.
  For JAGS-3.4.0 this usually is: 
  x64: C:\Program Files\JAGS\JAGS-3.4.0\x64\modules
  x32: C:\Program Files\JAGS\JAGS-3.4.0\x32\modules

+ Note: If you compile both 32bit and 64bit don't forget to make clean between the building.