gwascatalog.md

BioClients.gwascatalog

GWAS Catalog

GWAS Catalog REST API client.

• https://www.ebi.ac.uk/gwas/docs/api
• https://www.ebi.ac.uk/gwas/rest/api
• https://www.ebi.ac.uk/gwas/rest/docs/api
• https://www.ebi.ac.uk/gwas/rest/docs/sample-scripts

Example commands

python3 -m BioClients.gwascatalog.Client list_studies --o gwascatalog_studies.tsv

python3 -m BioClients.gwascatalog.Client search_studies --searchtype efotrait --ids "Worry measurement"

python3 -m BioClients.gwascatalog.Client get_studyAssociations --ids "GCST004364,GCST000227"

python3 -m BioClients.gwascatalog.Client get_snps --ids "rs6085920,rs2273833,rs6684514,rs144991356"