Client to the DDKG-UBKG REST API.
The Data Distillery Knowledge Graph (DDKG) is an extension and instance of the Unified Biomedical Knowledge Graph (UBKG), developed by the University of Pittsburgh, Children's Hospital of Philadelphia, and the Common Fund Data Ecosystem (CFDE) Data Distillery Partnership Project.
python3 -m BioClients.ubkg.Client -h
usage: Client.py [-h] [--o OFILE] [--i IFILE] [--ids IDS] [--term TERM]
[--sab SAB] [--relationship RELATIONSHIP]
[--mindepth MINDEPTH] [--maxdepth MAXDEPTH] [--nmax NMAX]
[--skip SKIP] [--api_host API_HOST]
[--api_base_path API_BASE_PATH] [--api_key API_KEY] [-v]
{search,info,list_relationship_types,list_node_types,list_node_type_counts,list_property_types,list_sabs,list_semantic_types,get_concept2codes,get_concept2concepts,get_concept2definitions,get_concept2paths,get_concept2trees,get_term2concepts}
UBKG REST API client
positional arguments:
{search,info,list_relationship_types,list_node_types,list_node_type_counts,list_property_types,list_sabs,list_semantic_types,get_concept2codes,get_concept2concepts,get_concept2definitions,get_concept2paths,get_concept2trees,get_term2concepts}
OPERATION
options:
-h, --help show this help message and exit
--o OFILE output (TSV)
--i IFILE UMLS CUI ID file
--ids IDS UMLS CUI IDs, comma-separated
--term TERM UMLS term, e.g. 'Asthma'
--sab SAB Standard abbreviation type
--relationship RELATIONSHIP
Relationship type
--mindepth MINDEPTH min path depth
--maxdepth MAXDEPTH max path depth
--nmax NMAX max records
--skip SKIP skip 1st SKIP queries
--api_host API_HOST
--api_base_path API_BASE_PATH
--api_key API_KEY
-v, --verbose
The Data Distillery Knowledge Graph (DDKG) is an extension and instance of the
Unified Biomedical Knowledge Graph (UBKG), developed by the University of
Pittsburgh, Children's Hospital of Philadelphia, and the Common Fund Data
Ecosystem (CFDE) Data Distillery Partnership Project.