-
Notifications
You must be signed in to change notification settings - Fork 6
356 lines (298 loc) · 13.1 KB
/
pull_request.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
# Candace Savonen Dec 2021
name: Pull Request
on:
pull_request:
branches: [ main, staging ]
jobs:
yaml-check:
name: Load user automation choices
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v4
with:
fetch-depth: 0
token: ${{ secrets.GH_PAT }}
# Use the yaml-env-action action.
- name: Load environment from YAML
uses: doughepi/[email protected]
with:
files: config_automation.yml # Pass a space-separated list of configuration files. Rightmost files take precedence.
# Delete the branch if this has been run before
- name: Delete branch locally and remotely
run: git push origin --delete preview-${{ github.event.pull_request.number }} || echo "No branch to delete"
# Make the branch fresh
- name: Make the branch fresh
run: |
git config --global --add safe.directory $GITHUB_WORKSPACE
git config --global user.name 'github-actions[bot]'
git config --global user.email 'github-actions[bot]@users.noreply.github.com'
branch_name='preview-${{ github.event.pull_request.number }}'
echo branch doesnt exist
git checkout -b $branch_name || echo branch exists
git push --set-upstream origin $branch_name || echo echo branch exists remotely
shell: bash
outputs:
toggle_spell_check: "${{ env.SPELL_CHECK }}"
toggle_style_code: "${{ env.STYLE_CODE }}"
toggle_url_check: "${{ env.URL_CHECKER }}"
toggle_quiz_check: "${{ env.CHECK_QUIZZES }}"
toggle_render_preview: "${{ env.RENDER_PREVIEW }}"
toggle_make_labs: "${{ env.MAKE_LABS }}"
rendering_docker_image: "${{ env.RENDERING_DOCKER_IMAGE }}"
########################## Make the error reports ##############################
spell-check:
name: Check spelling
needs: yaml-check
if: ${{needs.yaml-check.outputs.toggle_spell_check == 'yes'}}
uses: jhudsl/ottr-reports/.github/workflows/report-maker.yml@main
with:
check_type: spelling
error_min: 1
gh_pat: secrets.GH_PAT
branch_name: ${GITHUB_HEAD_REF}
url-check:
name: Check URLs
needs: yaml-check
if: ${{needs.yaml-check.outputs.toggle_url_check == 'yes'}}
uses: jhudsl/ottr-reports/.github/workflows/report-maker.yml@main
with:
check_type: urls
error_min: 1
gh_pat: secrets.GH_PAT
branch_name: ${GITHUB_HEAD_REF}
########################## Style Code ##############################
style-code:
name: Style code
needs: yaml-check
runs-on: ubuntu-latest
if: ${{needs.yaml-check.outputs.toggle_style_code == 'yes'}}
container:
image: jhudsl/base_ottr:main
steps:
- name: Checkout
uses: actions/checkout@v4
with:
fetch-depth: 0
token: ${{ secrets.GH_PAT }}
- name: Run styler
run: Rscript -e "styler::style_file(list.files(pattern = 'Rmd$', recursive = TRUE, full.names = TRUE));warnings()"
- name: Commit styled files
run: |
git config --system --add safe.directory "$GITHUB_WORKSPACE"
git config --global user.name 'github-actions[bot]'
git config --global user.email 'github-actions[bot]@users.noreply.github.com'
git add \*.Rmd
git commit -m 'Style Rmds' || echo "No changes to commit"
git push origin || echo "No changes to commit"
########################## Create Labs ##############################
make-labs:
name: Make Labs from Lab Keys
needs: yaml-check
runs-on: ubuntu-latest
if: ${{needs.yaml-check.outputs.toggle_make_labs == 'yes'}}
container:
image: ${{needs.yaml-check.outputs.rendering_docker_image}}
steps:
- name: Checkout
uses: actions/checkout@v4
with:
fetch-depth: 0
token: ${{ secrets.GH_PAT }}
- name: Run lab converter
shell: bash
run: bash scripts/blank_labs_from_keys.sh
- name: Commit lab Rmds created from lab key Rmds
run: |
git config --system --add safe.directory "$GITHUB_WORKSPACE"
git config --global user.name 'github-actions[bot]'
git config --global user.email 'github-actions[bot]@users.noreply.github.com'
git add \*.Rmd
git commit -m 'Create Lab Rmds from Keys' || echo "No changes to commit"
git push origin || echo "No changes to commit"
########################## Preview ##############################
render-preview:
name: Render preview
needs: [yaml-check, make-labs]
runs-on: ubuntu-latest
container:
image: ${{needs.yaml-check.outputs.rendering_docker_image}}
if: ${{needs.yaml-check.outputs.toggle_render_preview == 'yes'}}
steps:
# Give permission to access the repo
- name: safelist repository
run: |
repo_name='${{ github.event.repository.name }}'
git config --global --add safe.directory /__w/$repo_name/$repo_name
# # Checks-out your repository with the token so your job can access it
- name: checkout
uses: actions/checkout@v4
with:
# get the full repo
fetch-depth: 0
# use github PAT
token: ${{ secrets.GH_PAT }}
# Set up git checkout
- name: Set up git checkout
run: |
git config --global user.name 'github-actions[bot]'
git config --global user.email 'github-actions[bot]@users.noreply.github.com'
branch_name='preview-${{ github.event.pull_request.number }}'
git fetch --all
git checkout $branch_name
git merge -s recursive --strategy-option=theirs origin/${{ github.head_ref }} --allow-unrelated-histories
shell: bash
- name: Get changed files
id: changed-files
uses: tj-actions/changed-files@v41
# NOTE: `since_last_remote_commit: true` is implied by default and falls back to the previous local commit.
- name: List all changed files
run: |
for file in ${{ steps.changed-files.outputs.all_changed_files }}; do
echo "$file was changed"
done
# We want a fresh run of the renders each time - so first delete old html files
- name: Delete old *.html
run: Rscript -e "rmarkdown::clean_site(preview = FALSE)"
# Now we want to render all the html files from the Rmd files
- name: Run render html for the main website
id: site
run: Rscript -e "rmarkdown::render_site()"
# Render module details for syllabus
- name: Render module details for syllabus
run: Rscript "scripts/render_module_details_for_syllabus.R"
# Render all module files
- name: Render html of modules where .Rmd has changed
run: |
Rscript --vanilla "scripts/render_modules.R" --files "${{ steps.changed-files.outputs.all_changed_files }}"
# Render the cheatsheets
- name: Render Cheatsheet pdfs
run: |
Rscript --vanilla "scripts/render_cheatsheets.R" --files "${{ steps.changed-files.outputs.all_changed_files }}"
# Render resource pdfs + html
- name: Render Resource pdfs + html
run: |
Rscript --vanilla "scripts/render_resources.R" --files "${{ steps.changed-files.outputs.all_changed_files }}"
# Generate list of files that need pdfs
- name: Generate list of lectures that need pdfs generated
run: |
Rscript --vanilla "scripts/render_html_list.R"
echo the following need pdfs:
echo "$(cat files.txt)"
- name: Store list of lectures that need pdfs generated // Delete intermediate files
id: getfiles
run: |
echo "files=$(cat files.txt)" >> $GITHUB_OUTPUT
rm files.txt
rm cheatsheet_files.csv
rm lab_files.csv
rm lecture_files.csv
# This checks on the steps before it and makes sure that they completed.
# If the renders didn't complete we don't want to commit the file changes
- name: Check on render steps
if: steps.site.outcome != 'success'
run: |
echo site status ${{steps.site.outcome}}
exit 1
# Commit the rendered website files
- name: Commit rendered website files to preview branch
id: commit
run: |
branch_name='preview-${{ github.event.pull_request.number }}'
git diff origin/main -- '*.html' >/dev/null && changes=true || changes=false
echo "changes=$changes" >> $GITHUB_OUTPUT
git add . --force
git commit -m 'Render preview' || echo "No changes to commit"
git pull --rebase --set-upstream origin $branch_name --allow-unrelated-histories --strategy-option=ours
git push --force || echo "No changes to commit"
shell: bash
- name: Find Comment
uses: peter-evans/[email protected]
id: fc
with:
issue-number: ${{ github.event.pull_request.number }}
comment-author: 'github-actions[bot]'
body-includes: latest commit
- name: Build components of the comment
id: build-components
run: |
course_name=$(head -n 1 _website.yml | cut -d'"' -f 2| tr " " "-")
website_link=$(echo "https://htmlpreview.github.io/?https://raw.githubusercontent.com/$GITHUB_REPOSITORY/preview-${{ github.event.pull_request.number }}/index.html")
echo "website_link=$website_link" >> $GITHUB_OUTPUT
echo "time=$(date +'%Y-%m-%d')" >> $GITHUB_OUTPUT
echo "commit_id=$GITHUB_SHA" >> $GITHUB_OUTPUT
echo ${{steps.commit.outputs.changes}}
- name: Create or update comment
if: steps.commit.outputs.changes == 'true'
uses: peter-evans/[email protected]
with:
comment-id: ${{ steps.fc.outputs.comment-id }}
issue-number: ${{ github.event.pull_request.number }}
body: |
Re-rendered previews from the latest commit: See [preview of website here](${{ steps.build-components.outputs.website_link }})
_Updated at ${{ steps.build-components.outputs.time }} with changes from ${{ steps.build-components.outputs.commit_id }}_
edit-mode: replace
- name: No comment if no changes
if: steps.commit.outputs.changes == 'false'
uses: peter-evans/[email protected]
with:
comment-id: ${{ steps.fc.outputs.comment-id }}
issue-number: ${{ github.event.pull_request.number }}
body: |
The latest commit did not produce rendering changes.
_Updated at ${{ steps.build-components.outputs.time }} with changes from ${{ steps.build-components.outputs.commit_id }}_
edit-mode: replace
# Save files for conversion to pdf
outputs:
pdffiles: "${{ steps.getfiles.outputs.files }}"
render-pdf-lectures:
name: Render pdf lecture slides
needs: render-preview
runs-on: ubuntu-latest
container:
image: ${{needs.yaml-check.outputs.rendering_docker_image}}
if: ${{needs.yaml-check.outputs.toggle_render_preview == 'yes'}}
strategy:
matrix:
modulenames: ${{fromJson(needs.render-preview.outputs.pdffiles)}}
steps:
# Give permission to access the repo
- name: safelist repository
run: |
repo_name='${{ github.event.repository.name }}'
git config --global --add safe.directory /__w/$repo_name/$repo_name
- name: Checkout files
uses: actions/checkout@v4
with:
fetch-depth: 0
token: ${{ secrets.GH_PAT }}
# Set up git checkout
- name: Set up git checkout
run: |
git config --global user.name 'github-actions[bot]'
git config --global user.email 'github-actions[bot]@users.noreply.github.com'
branch_name='preview-${{ github.event.pull_request.number }}'
git fetch --all
git checkout $branch_name
git merge -s recursive --strategy-option=theirs origin/${{ github.head_ref }} --allow-unrelated-histories
shell: bash
# Render pdfs of slides
- name: Convert HTML to PDF
uses: LukaszLapaj/html-to-pdf-action@master
with:
htmlFile: ./modules/${{ matrix.modulenames }}/${{ matrix.modulenames }}.html
outputFile: ./modules/${{ matrix.modulenames }}/${{ matrix.modulenames }}.pdf
# Commit the rendered website files
- name: Commit rendered website pdf files to preview branch
id: commit_pdfs
run: |
branch_name='preview-${{ github.event.pull_request.number }}'
git diff origin/main -- '*.pdf' >/dev/null && changes=true || changes=false
echo "changes=$changes" >> $GITHUB_OUTPUT
git status
git add *.pdf --force
git commit -m 'Render preview' || echo "No changes to commit"
git status
git merge -s recursive --strategy-option=ours origin/${{ github.head_ref }} --allow-unrelated-histories
git push --force || echo "No changes to commit"
shell: bash