sudo run fimoall.sh get permission denied

[Roger-GOAT]

Hi, thanks for the great job! I get an error hoping for your help.
In terminal
sudo sh ./fimoall.sh

Or rstudio

### run the following codes in the R under linux environment
refdir='./Downloads/package/IReNA/mm39.fa.gz'
fimodir <- './meme' (I am not sure this is right?)
outputdir1 <- './irena/'
motifdir <- './Downloads/motif/'
find_motifs_targetgenes(gene_tss,motif1,refdir,fimodir,outputdir1,motifdir)
### run fimo_all script in shell
shell_code <- paste0('echo "password" | sudo -S sh ',outputdir1,'fimo/fimoall.sh')
system(shell_code,wait=TRUE) 

./irena/fimo/ENSMUSG00000024782/Fimo1.sh: 1: ./meme: Permission denied
..........
./irena/fimo/ENSMUSG00000024782/Fimo1.sh: 500: ./meme: Permission denied

I get a lot of .txt files with 0B size.
fimodir <- './meme' (I am not sure this is right?)

[Roger-GOAT]

I set fimodir <- as './meme/bin/fimo'，the error shows like this:

sh: 0: cannot open ./irena/fimo/ENSMUSG00000085633/Fimo1.sh: No such file

......

sh: 0: cannot open ./irena/fimo/ENSMUSG00000024782/Fimo1.sh: No such file

but the file is exist and was opened like this

./meme/bin/fimo --parse-genomic-coord --max-stored-scores 2000000 --text >./irena/fimo/ENSMUSG00000024782/M00041.txt ./Downloads/motif/M00041.txt ./irena/fasta/ENSMUSG00000024782.fa;

......
./meme/bin/fimo --parse-genomic-coord --max-stored-scores 2000000 --text >./irena/fimo/ENSMUSG00000024782/M00056.txt ./Downloads/motif/M00056.txt ./irena/fasta/ENSMUSG00000024782.fa;

would you give some tips? thanks!
best,