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have problem in digestGenome #1

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runningsnail2333 opened this issue Dec 29, 2019 · 1 comment
Open

have problem in digestGenome #1

runningsnail2333 opened this issue Dec 29, 2019 · 1 comment

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@runningsnail2333
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hi
I have problem in the digestGenome it seems like this, so seek for your help, thanks
image
@jma1991
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jma1991 commented Apr 24, 2023

The digestGenome function takes as input a BSgenome, DNAStringSet, or FaFile object. You have passed a literal string with the name of the BSgenome package. Instead, you should do:

library(BSgenome.Mmusculus.UCSC.mm10)
fragments <- digestGenome(BSgenome.Mmusculus.UCSC.mm10)

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@jma1991 @runningsnail2333