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conda-env.yml
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name: pangraph
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- aragorn=1.2.41=hec16e2b_0
- aria2=1.23.0=0
- backports=1.0=pyhd8ed1ab_3
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- blosc=1.21.1=h83bc5f7_3
- bokeh=2.4.3=pyhd8ed1ab_3
- brotlipy=0.7.0=py39hb9d737c_1005
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2022.9.24=ha878542_0
- cffi=1.15.1=py39he91dace_2
- click=8.1.3=unix_pyhd8ed1ab_2
- colorama=0.4.6=pyhd8ed1ab_0
- colorlover=0.3.0=py_0
- cryptography=38.0.3=py39h3ccb8fc_0
- english=2020.7.0=pyhd8ed1ab_0
- freetype=2.12.1=hca18f0e_0
- gawk=5.1.0=h7f98852_0
- gettext=0.21.1=h27087fc_0
- gmp=6.2.1=h58526e2_0
- gmpy2=2.1.2=py39h376b7d2_1
- hdf5=1.12.2=nompi_h4df4325_100
- icu=70.1=h27087fc_0
- idna=3.4=pyhd8ed1ab_0
- infernal=1.1.4=pl5321hec16e2b_1
- interchange=2021.0.4=pyhd8ed1ab_0
- jinja2=3.1.2=pyhd8ed1ab_1
- jpeg=9e=h166bdaf_2
- keyutils=1.6.1=h166bdaf_0
- krb5=1.19.3=h08a2579_0
- lcms2=2.14=h6ed2654_0
- ld_impl_linux-64=2.39=hcc3a1bd_1
- lerc=4.0.0=h27087fc_0
- libblas=3.9.0=16_linux64_openblas
- libcblas=3.9.0=16_linux64_openblas
- libcurl=7.86.0=h2283fc2_1
- libdeflate=1.14=h166bdaf_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.4.2=h7f98852_5
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=12.2.0=h65d4601_19
- libgfortran-ng=12.2.0=h69a702a_19
- libgfortran5=12.2.0=h337968e_19
- libgomp=12.2.0=h65d4601_19
- libiconv=1.17=h166bdaf_0
- libidn2=2.3.4=h166bdaf_0
- liblapack=3.9.0=16_linux64_openblas
- libnghttp2=1.47.0=hff17c54_1
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.21=pthreads_h78a6416_3
- libpng=1.6.39=h753d276_0
- libsqlite=3.40.0=h753d276_0
- libssh2=1.10.0=hf14f497_3
- libstdcxx-ng=12.2.0=h46fd767_19
- libtiff=4.4.0=h55922b4_4
- libunistring=0.9.10=h7f98852_0
- libuuid=2.32.1=h7f98852_1000
- libwebp-base=1.2.4=h166bdaf_0
- libxcb=1.13=h7f98852_1004
- libxml2=2.10.3=h7463322_0
- libzlib=1.2.13=h166bdaf_4
- lz4-c=1.9.3=h9c3ff4c_1
- lzo=2.10=h516909a_1000
- mafft=7.508=hec16e2b_0
- markupsafe=2.1.1=py39hb9d737c_2
- mmseqs2=14.7e284=pl5321hf1761c0_0
- mpc=1.2.1=h9f54685_0
- mpfr=4.1.0=h9202a9a_1
- ncurses=6.3=h27087fc_1
- neobolt=1.7.17=py39hb9d737c_5
- neotime=1.7.4=py_0
- networkx=2.8.8=pyhd8ed1ab_0
- nomkl=1.0=h5ca1d4c_0
- numexpr=2.8.3=py39hf625f34_101
- numpy=1.23.5=py39h3d75532_0
- openjpeg=2.5.0=h7d73246_1
- openssl=3.0.7=h166bdaf_0
- packaging=21.3=pyhd8ed1ab_0
- pandas=1.5.2=py39h4661b88_0
- perl=5.32.1=2_h7f98852_perl5
- pillow=9.2.0=py39hf3a2cdf_3
- pip=22.3.1=pyhd8ed1ab_0
- plotly=4.14.3=pyh44b312d_0
- prodigal=2.6.3=hec16e2b_4
- prompt-toolkit=3.0.33=pyha770c72_0
- prompt_toolkit=3.0.33=hd8ed1ab_0
- psutil=5.9.4=py39hb9d737c_0
- pthread-stubs=0.4=h36c2ea0_1001
- py2neo=2021.2.3=pyhd8ed1ab_0
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.13.0=pyhd8ed1ab_0
- pyhmmer=0.6.3=py39hbf8eff0_0
- pyopenssl=22.1.0=pyhd8ed1ab_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pysocks=1.7.1=pyha2e5f31_6
- pytables=3.7.0=py39h6a7961f_3
- python=3.9.15=hba424b6_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python_abi=3.9=3_cp39
- pytz=2022.6=pyhd8ed1ab_0
- pyyaml=6.0=py39hb9d737c_5
- readline=8.1.2=h0f457ee_0
- retrying=1.3.3=py_2
- scipy=1.9.3=py39hddc5342_2
- setuptools=65.5.1=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- snappy=1.1.9=hbd366e4_2
- sqlite=3.40.0=h4ff8645_0
- tk=8.6.12=h27826a3_0
- tornado=6.2=py39hb9d737c_1
- tqdm=4.64.1=pyhd8ed1ab_0
- typing_extensions=4.4.0=pyha770c72_0
- tzdata=2022f=h191b570_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- wget=1.20.3=ha35d2d1_1
- wheel=0.38.4=pyhd8ed1ab_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- zlib=1.2.13=h166bdaf_4
- zstd=1.5.2=h6239696_4
- pip:
- certifi==2022.9.24
- dict2graph==2.0.0
- graphio==0.5.0
- linetimer==0.1.5
- monotonic==1.6
- neo4j==5.2.1
- pansi==2020.7.3
- urllib3==1.26.12